Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1q1ra2 | Putidaredoxin reductase | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
| Hit | d1h2ba2 | Alcohol dehydrogenase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Query <-- 1.466 --> IntermediateDALI alignment (Z-score: 4.6 Raw score:383.50) query 1 -------------------------------gMENKKMNLLLfsgdydkALASLIIANAA 29 :::::::::: ::::::::::: d1q1ra2 1 rplpvasgavgkannfrylrtledaecirrqlIADNRLVVIG------gGYIGLEVAATA 54 query 30 REMEIEVTIFCAfwgLLLLrdpekasqedkslyeqafssltpreAEELPlskmnlggigk 89 :::::::::::: :::: ::::: d1q1ra2 55 IKANMHVTLLDT---AARV------------------------lERVTA----------- 76 query 90 kmllemmkeekapklSDLLSGARKKEVKFY--AXQLsveimgfkkeelfpevqiMDVKey 147 ::::::::::::::: :::: :::: d1q1ra2 77 -----------ppvsAFYEHLHREAGVDIRtgTQVC---gfemstdqqkvtavlCEDG-- 120 query 148 LKNAleSDLQLFI-- 160 :::: ::::::: d1q1ra2 121 TRLP--ADLVIAGig 133 FAST alignment (Normalized score: 4.48 Raw score:653.70) query 1 -------------------------------GMENKKMNLLLFSGDYDK---ALASLIIA 26 ::::::::: :::::::: d1q1ra2 1 RPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVV---------IGGGYIGLEVA 51 query 27 NAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGG 86 :::::::::::::: d1q1ra2 52 ATAIKANMHVTLLD---------------------------------------------- 65 query 87 IGKKMLLEMMKEEKAP-------------KLSDLLSGARKKEVKFYAXQLSVEIMGFKKE 133 ::::::::::::::::: d1q1ra2 66 ----------------TAARVLERVTAPPVSAFYEHLHREAGVDIR-------------- 95 query 134 ELFPEVQIMDVKEYLKNA----------------------LESDLQLFI---- 160 ::::: ::::::: d1q1ra2 96 ------TGTQV-------CGFEMSTDQQKVTAVLCEDGTRLPADLVI--AGIG 133 TMalign alignment (TM-score: 0.32 Raw score:51.98) query 1 --------------------------------GMENKKMNLLLFSGDYDKALASLIIANA 28 :::::::::::: :::::::::::: d1q1ra2 1 RPLPVASGAVGKANNFRYLRTLEDAECIRRQL---IADNRLVVIGGG-YIGLEVAATAIK 56 query 29 AREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIG 88 :: ::::: ::: :: :::: : : d1q1ra2 57 AN-----MHVTL---LDT-----------------------AA----RVLE---R--V-- 74 query 89 KK--MLL--EMMKEEKAPKLSDLLSGARKKEV-KF--YA----------------XQLSV 125 :: : ::::::::::: : : : ::::: d1q1ra2 75 TAPP--VSA--------FYEHLHREAGV---DI-RTG-TQVCGFEMSTDQQKVTAVLCED 119 query 126 EIMGFKKEELFPEVQIMDVKEYLKNALESDLQLFI--- 160 : ::: :: : :::: d1q1ra2 120 G--------------TRL--PA---D-----LVIAGIG 133 HHsearch alignment (Probability: 0.05 E-value:0.02) query 20 LASLIIANAAREMEIEVTIF 39 :::::::::::::::::::: d1q1ra2 45 YIGLEVAATAIKANMHVTLL 64
Intermediate <-- 1.406 --> HitDALI alignment (Z-score: 4.0 Raw score:340.60) d1q1ra2 1 rplpvasgavgkannfrylrtlEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIK-ANM 59 :::::::::::::::::::::::::::::::::: ::: d1h2ba2 1 --isreklvemapladagitayRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVmTPA 58 d1q1ra2 60 HVTLLDTaarvlervtappvSAFYEHLHREAGV-DIRT-GTQVCGfemstdqqkvtavlc 117 ::::::: ::::::::::::: :::: :::::: d1h2ba2 59 TVIALDV-------------KEEKLKLAERLGAdHVVDaRRDPVK--------------- 90 d1q1ra2 118 edgTRLP----ADLVIAGIG---------------------------------------- 133 :::: ::::::::: d1h2ba2 91 -qvMELTrgrgVNVAMDFVGsqatvdytpyllgrmgrliivgyggelrfptirvissevs 149 d1q1ra2 134 ----------------------- 134 d1h2ba2 150 fegslvgnyvelhelvtlalqgk 172 FAST alignment (Normalized score: 5.24 Raw score:792.60) d1q1ra2 1 RPLPVASGAVGKANNFRYLR------------------TLEDAECIRRQLIADNRLVVIG 42 :::::::::::::::::::::: d1h2ba2 1 --------------------ISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVG 40 d1q1ra2 43 GGYIGLEVAATAI-KANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAG-VDIRTGTQV 100 ::::::::::::: ::::::::::: :::::::::::: :::: d1h2ba2 41 VGGLGHIAVQLLKVMTPATVIALDV-------------KEEKLKLAERLGADHVV----- 82 d1q1ra2 101 CGFEMSTDQQKVTAVL-CEDGTRL------------PADLVIAGIG-------------- 133 :::: :::::::: d1h2ba2 83 ----------------DARRD---PVKQVMELTRGRGVNVAMDF--VGSQATVDYTPYLL 121 d1q1ra2 134 --------------------------------------------------- 134 d1h2ba2 122 GRMGRLIIVGYGGELRFPTIRVISSEVSFEGSLVGNYVELHELVTLALQGK 172 TMalign alignment (TM-score: 0.49 Raw score:64.95) d1q1ra2 1 ----------------RPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGG 44 :::::::::::::::::::::::::: d1h2ba2 1 ISREKLVEMAPLADAG------------------ITAYRAVKKAARTLYPGAYVAIVGVG 42 d1q1ra2 45 YIGLEVAATAIK-ANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGF 103 :::::::::::: :::::::::::::: :: ::::: ::::::: :::: d1h2ba2 43 GLGHIAVQLLKVMTPATVIALDVKEEK---------LK-LAERL--GADHVVD-ARRD-- 87 d1q1ra2 104 EMSTDQQKVTAVLCEDGT-R-L----PADLVIAGI----------------------G-- 133 :: :: : : ::::::::: : d1h2ba2 88 -----------PV---KQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYG 133 d1q1ra2 134 --------------------------------------- 134 d1h2ba2 134 GELRFPTIRVISSEVSFEGSLVGNYVELHELVTLALQGK 172 HHsearch alignment (Probability: 0.95 E-value:0.00) d1q1ra2 31 QLIADNRLVVIGGGYIGLEVAATAIKAN-MHVTLLDTAARVLER--VT--------APPV 79 :::::::::::::::::::::::::::: ::::::::::::::: :: :::: d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDP 88 d1q1ra2 80 SAFYEHLHREAGVDIRTGTQV 100 ::::::::::::::::::::: d1h2ba2 89 VKQVMELTRGRGVNVAMDFVG 109