Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1h6va2 | Mammalian thioredoxin reductase | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
| Hit | d1jg1a_ | Protein-L-isoaspartyl O-methyltransferase | S-adenosyl-L-methionine-dependent methyltransferases | S-adenosyl-L-methionine-dependent methyltransferases | α/β |
Query <-- 1.576 --> IntermediateDALI alignment (Z-score: 4.4 Raw score:352.20) query 1 ----------------gmENKKMNLLLfsgdydkALASLIIANAAREMEIEVTIFCafwG 44 ::::::::: :::::::::::::::::::::: : d1h6va2 1 pgdkeycissddlfslpyCPGKTLVVG------aSYVALECAGFLAGIGLDVTVMV---R 51 query 45 LLLlrdpekasqedkslyeqafssltpreAEELPlskmnlggigkkmllemmkeekapKL 104 ::: ::::: :: d1h6va2 52 SIL--------------------------LRGFD----------------------qdMA 63 query 105 SDLLSGARKKEVKFYAX--------------------qLSVEImgfkkeelfpevqimDV 144 ::::::::::::::::: ::::: :: d1h6va2 64 NKIGEHMEEHGIKFIRQfvptkieqieagtpgrlkvtaKSTNS--------------eET 109 query 145 KEylknaLESDLQLFI-- 160 :: ::::::::: d1h6va2 110 IE-----DEFNTVLLAvg 122 FAST alignment (Normalized score: 4.15 Raw score:579.90) query 1 GMEN--------------------KKMNLLLFSGDYDK---ALASLIIANAAREMEIEVT 37 ::::: ::::::::::::::::::: d1h6va2 1 ----PGDKEYCISSDDLFSLPYCPGKTLV---------VGASYVALECAGFLAGIGLDVT 47 query 38 IFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMK 97 ::::: d1h6va2 48 VMVRS------------------------------------------------------- 52 query 98 EEKAP---------KLSDLLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIMDVKEYL 148 ::::::::::::::::: :::: d1h6va2 53 -----ILLRGFDQDMANKIGEHMEEHGIKFI--------------------RQFV----- 82 query 149 KN----------------------------ALESDLQLFI---- 160 :::::::: d1h6va2 83 --PTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVL--LAVG 122 TMalign alignment (TM-score: 0.40 Raw score:63.69) query 1 -----------------GMENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCAFW 43 :: :::::::: :::::::::::::::::::::::: d1h6va2 1 PGDKEYCISSDDLFSLPYC-PGKTLVVG------ASYVALECAGFLAGIGLDVTVMVR-- 51 query 44 GLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKK--MLLEMMKEEKA 101 ::: : :: :: d1h6va2 52 -SIL--------------------------L--RG----------FDQD----------- 61 query 102 PKLSDLLSGARKKEVKFYA-X--------------------QLSVEIMGFKKEELFPEVQ 140 :::::::::::::::::: : ::: :: d1h6va2 62 -MANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKST-NS------------- 106 query 141 IMDVKEYLKNALESDLQLF-I- 160 :: ::: : ::::::: : d1h6va2 107 -EE-TIE--D--EFNTVLLAVG 122 HHsearch alignment (Probability: 0.18 E-value:0.01) query 20 LASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPL 79 ::::::::::::::::::::::::::: d1h6va2 30 YVALECAGFLAGIGLDVTVMVRSILLR--------------------------------- 56 query 80 SKMNLGGIGKKMLLEMMKEEKA 101 ::::::::::::::::::: d1h6va2 57 ---GFDQDMANKIGEHMEEHGI 75
Intermediate <-- 1.663 --> HitDALI alignment (Z-score: 3.6 Raw score:320.50) d1h6va2 1 ---------------------------------------------------------pgd 3 d1jg1a_ 1 ekelyekwmrtvemlkaegiirskeveraflkyprylsvedkykkyahideplpipagqt 60 d1h6va2 4 keycisSDDLFSL--pycpGKTLVVGASYvaLECAGFLAGI-GLDVTVMVRSILLrgfdq 60 ::::::: :::::::::: :::::::::: ::::::::::::: d1jg1a_ 61 vsaphmVAIMLEIanlkpgMNILEVGTGS--GWNAALISEIvKTDVYTIERIPEL----- 113 d1h6va2 61 dmaNKIGEHME---EHGIKFIRQFVPTkieqieagtpgrlkvtakstnseeTIEDEFNTV 117 :::::::: ::::::::::::: ::::::::: d1jg1a_ 114 --vEFAKRNLEragVKNVHVILGDGSK----------------------gfPPKAPYDVI 149 d1h6va2 118 LLAVG------------------------------------------------------- 122 ::::: d1jg1a_ 150 IVTAGapkipeplieqlkiggkliipvgsyhlwqellevrktkdgikiknhggvafvpli 209 d1h6va2 123 ------ 123 d1jg1a_ 210 geygwk 215 FAST alignment (Normalized score: 3.09 Raw score:499.90) d1h6va2 1 PGDKEYCI---------------------------------------------------- 8 d1jg1a_ 1 --------EKELYEKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEP 52 d1h6va2 9 ----------SSDDLFSLPYCP-----------GKTLVVGASYVA-LECAGFLAG-IGLD 45 :::::: ::::::::: ::::::::: :::: d1jg1a_ 53 LPIPAGQTVSAPHMVA------IMLEIANLKPGMNILEVGTG---SGWNAALISEIVKTD 103 d1h6va2 46 VTVMVRSILLRGFDQDM---ANKIGEHMEE---HGIKFIRQFVPTKIEQIEAGTPGRLKV 99 ::::::: :::::::::: :::::: ::::: d1jg1a_ 104 VYTIERI----------PELVEFAKRNLERAGVKNVHVI-LGDGS--------------- 137 d1h6va2 100 TAKSTNSEE---TIEDEFNTVLLAVG---------------------------------- 122 :::::::::::: d1jg1a_ 138 ---------KGFPPKAPYDVIIVT--AGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELL 186 d1h6va2 123 ----------------------------- 123 d1jg1a_ 187 EVRKTKDGIKIKNHGGVAFVPLIGEYGWK 215 TMalign alignment (TM-score: 0.51 Raw score:62.24) d1h6va2 1 ------------------------------------------------------------ 1 d1jg1a_ 1 EKELYEKWMRTVEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQT 60 d1h6va2 1 -----PGDKEYCISSDDLFSLPYCP--GKTLVVGASYVALECAGFLAGI-GLDVTVMVRS 52 :::::::::::: :::::::::: :::::::::: :::::::::: d1jg1a_ 61 VSAPH--------MVAIMLEIANLKPGMNILEVGTGS--GWNAALISEIVKTDVYTIERI 110 d1h6va2 53 I-LLRGFDQDMA-NKIGEH-MEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEET 109 : :: : : :::: : ::::::::::::::: :: d1jg1a_ 111 PELV----E--FAKRNL-ERAGVKNVHVILGDGSK--------------GF--------- 140 d1h6va2 110 IE-DEFNTVLLAV----------------------------------------------- 121 :: :::::::::: d1jg1a_ 141 PPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSYHLWQELLEVRKTKDGIKIKNH 200 d1h6va2 122 -----G--------- 122 : d1jg1a_ 201 GGVAFVPLIGEYGWK 215 HHsearch alignment (Probability: 0.66 E-value:0.00) d1h6va2 12 DLFSLPYCPGKTLVVGASY--VALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEH 69 :::::: :::::::::::: ::::::: ::::::::::: ::::::::::: d1jg1a_ 72 EIANLK-PGMNILEVGTGSGWNAALISE---IVKTDVYTIER-------IPELVEFAKRN 120 d1h6va2 70 MEEHGI 75 :::::: d1jg1a_ 121 LERAGV 126