Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ps9a3 | 2,4-dienoyl-CoA reductase, middle domain | Nucleotide-binding domain | Nucleotide-binding domain | α/β |
| Hit | d1cjca2 | Adrenodoxin reductase of mitochondrial p450 systems | Nucleotide-binding domain | Nucleotide-binding domain | α/β |
Query <-- 1.613 --> IntermediateDALI alignment (Z-score: 4.1 Raw score:393.70) query 1 ---------------------------------------GMENKKMNLLLfsgdydkALA 21 ::::::::::: ::: d1ps9a3 1 intcigcnqacldqifvgkvtsclvnprachetkmpilpAVQKKNLAVVG------aGPA 54 query 22 SLIIANAAREMEIEVTIFCAfwgLLLLrdpekasqedkslyeqafssltpreaeELPLsk 81 :::::::::::::::::::: :::: :::: d1ps9a3 55 GLAFAINAAARGHQVTLFDA---HSEI------------------------ggqFNIA-- 85 query 82 mnlgGIGKKmllemmkeekaPKLSDLLSGARKKEVKFYAXqlsveimgfkkeelfpevqI 141 ::::: :::::::::::::::::::: : d1ps9a3 86 --kqIPGKE--------efyETLRYYRRMIEVTGVTLKLN------------------hT 117 query 142 MDVKEYlknaLESDLQLFI----------------------------------------- 160 :::::: ::::::::: d1ps9a3 118 VTADQL----QAFDETILAsgipnralaqplidsgktvhliggcdvameldarraiaqgt 173 query 161 ------ 161 d1ps9a3 174 rlalei 179 FAST alignment (Normalized score: 3.87 Raw score:654.60) query 1 GME------------------------------------------NKKMNLLLFSGDYDK 18 :::::: d1ps9a3 1 ---INTCIGCNQACLDQIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAV--------- 48 query 19 ---ALASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLT-PREA 74 :::::::::::::::::::::: :::: d1ps9a3 49 VGAGPAGLAFAINAAARGHQVTLFD------------------------------AHSEI 78 query 75 EELPLSKMNLGGIGKKMLLEMMKEEKAP------------------KLSDLLSGARKKEV 116 :::::::::::::: d1ps9a3 79 ----------------------------GGQFNIAKQIPGKEEFYETLRYYRRMIEVTGV 110 query 117 KFYAXQLSVEIMGFKKEELFPE-VQIMDVKEYLKNA-LESDLQLFI-------------- 160 ::: :::::::: ::::::: d1ps9a3 111 TLK-------------------LNHTVTADQ-----LQAFDETI--LASGIPNRALAQPL 144 query 161 ----------------------------------- 161 d1ps9a3 145 IDSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI 179 TMalign alignment (TM-score: 0.44 Raw score:70.82) query 1 ---------------------------------------GMENKKMNLLLFSGDYDKALA 21 ::::::::::: :::: d1ps9a3 1 INTCIGCNQACLDQIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVG------AGPA 54 query 22 SLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREA-EELPLS 80 :::::::::::::::::::: ::::: : :::: d1ps9a3 55 GLAFAINAAARGHQVTLFDA--HSEIG-------------------------GQ-FNIA- 85 query 81 KMNLGGIGKKMLLE-MMKEEKAPKLSDLLSGARKKEVKFYAXQLSVEIMGFKKEELFPEV 139 : :::::: :: ::::::::::::::::::::: : d1ps9a3 86 --K-QIPGKE--EFY-------ETLRYYRRMIEVTGVTLKLNH-T--------------- 117 query 140 QIMDVKEYLKNALESDLQLFI--------------------------------------- 160 :::::: :::::::::: d1ps9a3 118 ----VTADQL-QAFDETILASGIPNRALAQPLIDSGKTVHLIGGCDVAMELDARRAIAQG 172 query 161 ------- 161 d1ps9a3 173 TRLALEI 179 HHsearch alignment (Probability: 0.10 E-value:0.01) query 2 MENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIF 39 ::::::::::::: :::::::::::::::::::: d1ps9a3 40 AVQKKNLAVVGAG-----PAGLAFAINAAARGHQVTLF 72
Intermediate <-- 2.217 --> HitDALI alignment (Z-score: 12.9 Raw score:1092.80) d1ps9a3 1 intcigcnqacldqifvgkvtsclvnprachetkmpilpavqKKNLAVVGAGPAGLAFAI 60 :::::::::::::::::: d1cjca2 1 ------------------------------------------TPQICVVGSGPAGFYTAQ 18 d1ps9a3 61 NAAARG--HQVTLFDAHSEIGGQFNIAKQIpGKEEFYETLRYYRRMIEVTGVTLKLNHTV 118 :::::: :::::::::::::::::::::: ::::::::::::::::::::::::::::: d1cjca2 19 HLLKHHsrAHVDIYEKQLVPFGLVRFGVAP-DHPEVKNVINTFTQTARSDRCAFYGNVEV 77 d1ps9a3 119 ----TADQLQ-AFDETILASGI---PNRALaQPLI---------------dSGKTVHLIG 155 :::::: ::::::::::: ::::: :::: ::::::::: d1cjca2 78 grdvTVQELQdAYHAVVLSYGAedkSRPID-PSVPfdpklgvvpnmegrvvDVPGLYCSG 136 d1ps9a3 156 GCDVAMELDARRAIAQGTRLALEI------------------------------------ 179 :::::::::::::::::::::::: d1cjca2 137 WVKRGPTGVITTTMTDSFLTGQILlqdlkaghlpsgprpgsafikalldsrgvwpvsfsd 196 d1ps9a3 180 ---------------------------------- 180 d1cjca2 197 wekldaeevsrgqasgkpreklldpqemlrllgh 230 FAST alignment (Normalized score: 10.35 Raw score:2101.00) d1ps9a3 1 INTCIGCNQACLDQIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFAI 60 :::::::::::::::::: d1cjca2 1 ------------------------------------------TPQICVVGSGPAGFYTAQ 18 d1ps9a3 61 NAAA--RGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVT---GVTLKLN 115 :::: ::::::::::::::::::::: ::::::::::::::::::: ::::::: d1cjca2 19 HLLKHHSRAHVDIYEKQLVPFGLVRFG-VAPDHPEVKNVINTFTQTA---RSDRCAFYGN 74 d1ps9a3 116 HT----VTADQLQ-AFDETILAS--GIPNRALAQP---------------------LIDS 147 :: ::::::: ::::::::: ::::: :::: d1cjca2 75 VEVGRDVTVQELQDAYHAVVLSYGAEDKSR-----PIDPSVPFDPKLGVVPNMEGRVVDV 129 d1ps9a3 148 GKTVHLIGGCDVA--MELDARRAIAQGTRLALEI-------------------------- 179 :::::::::: :::::::::::::::::: d1cjca2 130 -PGLYCSGWVK--RGPTGVITTTMTDSFLTGQI-LLQDLKAGHLPSGPRPGSAFIKALLD 185 d1ps9a3 180 --------------------------------------------- 180 d1cjca2 186 SRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEMLRLLGH 230 TMalign alignment (TM-score: 0.65 Raw score:116.57) d1ps9a3 1 INTCIGCNQACLDQIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFAI 60 :::::::::::::::::: d1cjca2 1 ------------------------------------------TPQICVVGSGPAGFYTAQ 18 d1ps9a3 61 NAAA-RG-HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTV 118 :::: :: ::::::::::::::::::::::: :::::::::::::::::::::::::::: d1cjca2 19 HLLKHHSRAHVDIYEKQLVPFGLVRFGVAPD-HPEVKNVINTFTQTARSDRCAFYGNVEV 77 d1ps9a3 119 T----ADQLQ-AFDETILASGI--PNRALAQPLI---------------DSGKTVHLIGG 156 : ::::: ::::::::::: :::::::::: ::::::::::: d1cjca2 78 GRDVTVQELQDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSGW 137 d1ps9a3 157 CDVAMELDARRAIAQGTRLALE-I------------------------------------ 179 :::::::::::::::::::::: : d1cjca2 138 VKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSGPRPGSAFIKALLDSRGVWPVSFSDW 197 d1ps9a3 180 --------------------------------- 180 d1cjca2 198 EKLDAEEVSRGQASGKPREKLLDPQEMLRLLGH 230 HHsearch alignment (Probability: 1.00 E-value:0.00) d1ps9a3 44 KNLAVVGAGPAGLAFAINAAARGH--QVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYY 101 :::::::::::::::::::::::: ::::::::::::::::::: :::::::::::::: d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGV-APDHPEVKNVINTF 60 d1ps9a3 102 RRMIEVTGVTLKLNHTVTAD-----QLQAFDETILASGIPNRALAQPLIDSGKTVHLIG 155 :::::::::::::::::::: :::::::::::::::::::::::::::::::::: d1cjca2 61 TQTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVV 119