Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1onfa2 | Glutathione reductase | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
| Hit | d1s3ea1 | Monoamine oxidase B | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
Query <-- 1.673 --> IntermediateDALI alignment (Z-score: 4.3 Raw score:336.20) query 1 ------------------GMENKKMNLLLfsgdydkALASLIIANAAREMEIEVTIFCAf 42 ::::::::::: ::::::::::::::::::::::: d1onfa2 1 fppvkgientissdeffnIKESKKIGIVG------sGYIAVELINVIKRLGIDSYIFAR- 53 query 43 wgLLLLrdpekasqedkslyeqafssltprEAEELplskmnlggigkkmllemmkeekap 102 :::: ::::: d1onfa2 54 --GNRI-----------------------lRKFDE------------------------s 64 query 103 KLSDLLSGARKKEVKFY--AXQLsveimgfkkeelfpevqiMDVKEYLknaLESDLQLF- 159 ::::::::::::::::: :::: ::::::: :::::::: d1onfa2 65 VINVLENDMKKNNINIVtfADVV-----eikkvsdknlsihLSDGRIY---EHFDHVIYc 116 query 160 i 160 d1onfa2 117 v 117 FAST alignment (Normalized score: 4.62 Raw score:632.20) query 1 -----------------GMEN-KKMNLLLFSGDYDK---ALASLIIANAAREMEIEVTIF 39 :::: ::::: ::::::::::::::::::::: d1onfa2 1 FPPVKGIENTISSDEFFNIKESKKIGI---------VGSGYIAVELINVIKRLGIDSYIF 51 query 40 CAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEE 99 :: d1onfa2 52 AR---------------------------------------------------------- 53 query 100 KAP-----------KLSDLLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIMDVKEYL 148 ::::::::::::::::: ::::: d1onfa2 54 ---GNRILRKFDESVINVLENDMKKNNINIV--------------------TFADV---- 86 query 149 KN--------------------ALESDLQLFI--- 160 :::::::: d1onfa2 87 --VEIKKVSDKNLSIHLSDGRIYEHFDHVI--YCV 117 TMalign alignment (TM-score: 0.39 Raw score:61.66) query 1 -------------------GMENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCA 41 :: :::::::: : ::::::::::::::::::::::: d1onfa2 1 FPPVKGIENTISSDEFFNIKE-SKKIGIVG-S-----GYIAVELINVIKRLGIDSYIFAR 53 query 42 FWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEEL-PLSKMNLGGIGKKMLLEMMKEEK 100 ::::: : :::: d1onfa2 54 ---GNRIL---------------------R--KFDES----------------------- 64 query 101 APKLS-DLLSGARKKEVKFYAXQLS------------VEIMGFKKEELFPEVQIMDV--K 145 :: ::::::::::::::::::: ::: : d1onfa2 65 ---VINVLENDMKKNNINIVTFADVVEIKKVSDKNLS-----------------IHLSDG 104 query 146 EYLKNALESDLQLFI- 160 :: :: :::::::: d1onfa2 105 RI-YE--HFDHVIYCV 117 HHsearch alignment (Probability: 0.09 E-value:0.01) query 20 LASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPL 79 :::::::::::::::::::::::::::: d1onfa2 32 YIAVELINVIKRLGIDSYIFARGNRILR-------------------------------- 59 query 80 SKMNLGGIGKKMLLEMMKEEKA 101 ::::::::::::::::::: d1onfa2 60 ---KFDESVINVLENDMKKNNI 78
Intermediate <-- 1.622 --> HitDALI alignment (Z-score: 7.3 Raw score:566.70) d1onfa2 1 fppvkgientissdeffnikeskKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK 60 ::::::::::::::::::::::::::::::::::::: d1s3ea1 1 --------------------nkcDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGR 40 d1onfa2 61 FDE--------------------------------------------------------- 63 ::: d1s3ea1 41 TYTlrnqkvkyvdlggsyvgptqnrilrlakelgletykvneverlihhvkgksypfrgp 100 d1onfa2 64 ------------------------------------------------------------ 64 d1s3ea1 101 fppvwnpityldhnnfwrtmddmgreipsdapwkaplaeewdnmtmkelldklcwtesak 160 d1onfa2 64 --------------------------------------------------SVINvLENDM 73 :::: ::::: d1s3ea1 161 qlatlfvnlcvtaethevsalwflwyvkqcggttriisttnggqerkfvgGSGQ-VSERI 219 d1onfa2 74 KKNNI-NIVTFADVVEIKKVSDkNLSIHLSDGRIYEhFDHVIYCV--------------- 117 ::::: :::::::::::::::: ::::::::::::: :::::::: d1s3ea1 220 MDLLGdRVKLERPVIYIDQTRE-NVLVETLNHEMYE-AKYVISAIpptlgmkihfnpplp 277 d1onfa2 118 ------------------------------------------------------------ 118 d1s3ea1 278 mmrnqmitrvfppgiltqygrvlrqpvdriyfagtetathwsgymegaveageraareil 337 d1onfa2 118 -------------------------------------------------- 118 d1s3ea1 338 hamgkipedeiwqsepesvdvpaqpitttflerhlpsvpgllrligltti 387 FAST alignment (Normalized score: 5.46 Raw score:1162.00) d1onfa2 1 FPPVKGIENTISSDEFFNIKESK---KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI 57 :::::::::::::::::::::::::::::::::: d1s3ea1 1 -----------------------NKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV 37 d1onfa2 58 LRKFDESVI--------------------------------------------------- 66 ::: d1s3ea1 38 GGR------TYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEVERLIHHVK 91 d1onfa2 67 ------------------------------------------------------------ 67 d1s3ea1 92 GKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLD 151 d1onfa2 67 ------------------------------------------------------------ 67 d1s3ea1 152 KLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGG 211 d1onfa2 67 -NVLENDMKKNNI----NIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV---- 117 ::::::::: :::::::::::::::: :::::::::::: ::::::: d1s3ea1 212 SGQVSERIMD---LLGDRVKLERPVIYIDQTRE-NVLVETLNHEMY-EAKYVIS--AIPP 264 d1onfa2 118 ------------------------------------------------------------ 118 d1s3ea1 265 TLGMKIHFNPPLPMMRNQMITRVFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEG 324 d1onfa2 118 ------------------------------------------------------------ 118 d1s3ea1 325 AVEAGERAAREILHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVPGLLRLIGL 384 d1onfa2 118 --- 118 d1s3ea1 385 TTI 387 TMalign alignment (TM-score: 0.66 Raw score:76.78) d1onfa2 1 --FPPVKGIENTISSDEFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL 58 :::::::::::::::::::::::::::::::::::: d1s3ea1 1 NK----------------------CDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVG 38 d1onfa2 59 R-KFDES----------------------------------------------------- 64 : ::::: d1s3ea1 39 GRTYTLRNQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEVERLIHHVKGKSYPFR 98 d1onfa2 65 ------------------------------------------------------------ 65 d1s3ea1 99 GPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTES 158 d1onfa2 65 -------------------------------------------------------V--IN 67 : : d1s3ea1 159 AKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSE- 217 d1onfa2 68 VLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV---------- 117 ::::::: ::::::::::::::::: ::::::::::::: :::::::: d1s3ea1 218 RIMDLLG---DRVKLERPVIYIDQTRE-NVLVETLNHEMYE-AKYVISAIPPTLGMKIHF 272 d1onfa2 118 ------------------------------------------------------------ 118 d1s3ea1 273 NPPLPMMRNQMITRVFPPGILTQYGRVLRQPVDRIYFAGTETATHWSGYMEGAVEAGERA 332 d1onfa2 118 ------------------------------------------------------- 118 d1s3ea1 333 AREILHAMGKIPEDEIWQSEPESVDVPAQPITTTFLERHLPSVPGLLRLIGLTTI 387 HHsearch alignment (Probability: 0.98 E-value:0.00) d1onfa2 71 NDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117 :::::::::::::::::::::::: :::::::::::::: ::::::: d1s3ea1 218 RIMDLLGDRVKLERPVIYIDQTRE-NVLVETLNHEMYEA-KYVISAI 262