Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1onfa2 | Glutathione reductase | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
| Hit | d1fl2a2 | Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
Query <-- 1.673 --> IntermediateDALI alignment (Z-score: 4.3 Raw score:336.20) query 1 ------------------GMENKKMNLLLfsgdydkALASLIIANAAREMEIEVTIFCAf 42 ::::::::::: ::::::::::::::::::::::: d1onfa2 1 fppvkgientissdeffnIKESKKIGIVG------sGYIAVELINVIKRLGIDSYIFAR- 53 query 43 wgLLLLrdpekasqedkslyeqafssltprEAEELplskmnlggigkkmllemmkeekap 102 :::: ::::: d1onfa2 54 --GNRI-----------------------lRKFDE------------------------s 64 query 103 KLSDLLSGARKKEVKFY--AXQLsveimgfkkeelfpevqiMDVKEYLknaLESDLQLF- 159 ::::::::::::::::: :::: ::::::: :::::::: d1onfa2 65 VINVLENDMKKNNINIVtfADVV-----eikkvsdknlsihLSDGRIY---EHFDHVIYc 116 query 160 i 160 d1onfa2 117 v 117 FAST alignment (Normalized score: 4.62 Raw score:632.20) query 1 -----------------GMEN-KKMNLLLFSGDYDK---ALASLIIANAAREMEIEVTIF 39 :::: ::::: ::::::::::::::::::::: d1onfa2 1 FPPVKGIENTISSDEFFNIKESKKIGI---------VGSGYIAVELINVIKRLGIDSYIF 51 query 40 CAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEE 99 :: d1onfa2 52 AR---------------------------------------------------------- 53 query 100 KAP-----------KLSDLLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIMDVKEYL 148 ::::::::::::::::: ::::: d1onfa2 54 ---GNRILRKFDESVINVLENDMKKNNINIV--------------------TFADV---- 86 query 149 KN--------------------ALESDLQLFI--- 160 :::::::: d1onfa2 87 --VEIKKVSDKNLSIHLSDGRIYEHFDHVI--YCV 117 TMalign alignment (TM-score: 0.39 Raw score:61.66) query 1 -------------------GMENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCA 41 :: :::::::: : ::::::::::::::::::::::: d1onfa2 1 FPPVKGIENTISSDEFFNIKE-SKKIGIVG-S-----GYIAVELINVIKRLGIDSYIFAR 53 query 42 FWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEEL-PLSKMNLGGIGKKMLLEMMKEEK 100 ::::: : :::: d1onfa2 54 ---GNRIL---------------------R--KFDES----------------------- 64 query 101 APKLS-DLLSGARKKEVKFYAXQLS------------VEIMGFKKEELFPEVQIMDV--K 145 :: ::::::::::::::::::: ::: : d1onfa2 65 ---VINVLENDMKKNNINIVTFADVVEIKKVSDKNLS-----------------IHLSDG 104 query 146 EYLKNALESDLQLFI- 160 :: :: :::::::: d1onfa2 105 RI-YE--HFDHVIYCV 117 HHsearch alignment (Probability: 0.09 E-value:0.01) query 20 LASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPL 79 :::::::::::::::::::::::::::: d1onfa2 32 YIAVELINVIKRLGIDSYIFARGNRILR-------------------------------- 59 query 80 SKMNLGGIGKKMLLEMMKEEKA 101 ::::::::::::::::::: d1onfa2 60 ---KFDESVINVLENDMKKNNI 78
Intermediate <-- 1.668 --> HitDALI alignment (Z-score: 12.9 Raw score:708.90) d1onfa2 1 --FPPVKGIE-----nTISS-DEFFNIkESKKIGIVGSGYIAVELINVIKRLGIDSYIFA 52 :::::::: :::: :::::: :::::::::::::::::::::::::::::::: d1fl2a2 1 wrNMNVPGEDqyrtkgVTYCpHCDGPLfKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE 60 d1onfa2 53 RGNRILrkfdesvINVLENDMKKNN-INIVTFADVVEIKKVSDKNLSIHLS-----DGRI 106 :::::: :::::::::::: ::::::::::::::::::::::::: :::: d1fl2a2 61 FAPEMK------aDQVLQDKLRSLKnVDIILNAQTTEVKGDGSKVVGLEYRdrvsgDIHN 114 d1onfa2 107 YEhFDHVIYCV-- 117 :: :::::::: d1fl2a2 115 IE-LAGIFVQIgl 126 FAST alignment (Normalized score: 10.58 Raw score:1284.00) d1onfa2 1 --FPPVKGIENTIS------------SDEFFNIKESKKIGIVGSGYIAVELINVIKRLG- 45 ::::::: ::::::::: ::::::::::::::::::::: d1fl2a2 1 WRNMNVPGE-----DQYRTKGVTYCPHCDGPLFKG-KRVAVIGGGNSGVEAAIDLAG--I 52 d1onfa2 46 -IDSYIFARGNRILRKFDESV---INVLENDMKK-NNINIVTFADVVEIKKVSDKN--LS 98 ::::::::::: :::::::::: ::::::::::::::::::: :: d1fl2a2 53 VEHVTLLEFAPE---------MKADQVLQDKLRSLKNVDIILNAQTTEVKGDGS--KVVG 101 d1onfa2 99 IHL-----SDGRIYEHFDHVIYCV---- 117 ::: ::::: :::::::: d1fl2a2 102 LEYRDRVSGDIHN-IELAGIFV--QIGL 126 TMalign alignment (TM-score: 0.76 Raw score:88.92) d1onfa2 1 --FPPVKGIE-N----TISSDEFFNIKES--KKIGIVGSGYIAVELINVIKRLGIDSYIF 51 :::::::: : ::::: ::::::: ::::::::::::::::::::::::::::: d1fl2a2 1 WRNMNVPGEDQYRTKGVTYCP-HCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLL 59 d1onfa2 52 ARGNRILRKFDESVINVLENDMKKNN-INIVTFADVVEIKKVSDKNLSIHLS-----DGR 105 :::::::: : :: ::: :::::: ::::::::::::::::::::::::: ::: d1fl2a2 60 EFAPEMKA-D---QV-LQD-KLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIH 113 d1onfa2 106 IYEHFDHVIYCV-- 117 ::: :::::::: d1fl2a2 114 NIE-LAGIFVQIGL 126 HHsearch alignment (Probability: 1.00 E-value:0.00) d1onfa2 6 GIENTISSDEFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESV 65 ::::::::::::::: ::::::::::::::::::::::::::::::::::::: : d1fl2a2 16 GVTYCPHCDGPLFKG--KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA-----D 68 d1onfa2 66 INVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDG---R-IYEHFDHVIYCV 117 ::::::::::::::::::::::::::::::::::::::: : :::::::::::: d1fl2a2 69 QVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQI 124