Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1onfa2 | Glutathione reductase | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
| Hit | d1fl2a1 | Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
Query <-- 1.673 --> IntermediateDALI alignment (Z-score: 4.3 Raw score:336.20) query 1 ------------------GMENKKMNLLLfsgdydkALASLIIANAAREMEIEVTIFCAf 42 ::::::::::: ::::::::::::::::::::::: d1onfa2 1 fppvkgientissdeffnIKESKKIGIVG------sGYIAVELINVIKRLGIDSYIFAR- 53 query 43 wgLLLLrdpekasqedkslyeqafssltprEAEELplskmnlggigkkmllemmkeekap 102 :::: ::::: d1onfa2 54 --GNRI-----------------------lRKFDE------------------------s 64 query 103 KLSDLLSGARKKEVKFY--AXQLsveimgfkkeelfpevqiMDVKEYLknaLESDLQLF- 159 ::::::::::::::::: :::: ::::::: :::::::: d1onfa2 65 VINVLENDMKKNNINIVtfADVV-----eikkvsdknlsihLSDGRIY---EHFDHVIYc 116 query 160 i 160 d1onfa2 117 v 117 FAST alignment (Normalized score: 4.62 Raw score:632.20) query 1 -----------------GMEN-KKMNLLLFSGDYDK---ALASLIIANAAREMEIEVTIF 39 :::: ::::: ::::::::::::::::::::: d1onfa2 1 FPPVKGIENTISSDEFFNIKESKKIGI---------VGSGYIAVELINVIKRLGIDSYIF 51 query 40 CAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEE 99 :: d1onfa2 52 AR---------------------------------------------------------- 53 query 100 KAP-----------KLSDLLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIMDVKEYL 148 ::::::::::::::::: ::::: d1onfa2 54 ---GNRILRKFDESVINVLENDMKKNNINIV--------------------TFADV---- 86 query 149 KN--------------------ALESDLQLFI--- 160 :::::::: d1onfa2 87 --VEIKKVSDKNLSIHLSDGRIYEHFDHVI--YCV 117 TMalign alignment (TM-score: 0.39 Raw score:61.66) query 1 -------------------GMENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCA 41 :: :::::::: : ::::::::::::::::::::::: d1onfa2 1 FPPVKGIENTISSDEFFNIKE-SKKIGIVG-S-----GYIAVELINVIKRLGIDSYIFAR 53 query 42 FWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEEL-PLSKMNLGGIGKKMLLEMMKEEK 100 ::::: : :::: d1onfa2 54 ---GNRIL---------------------R--KFDES----------------------- 64 query 101 APKLS-DLLSGARKKEVKFYAXQLS------------VEIMGFKKEELFPEVQIMDV--K 145 :: ::::::::::::::::::: ::: : d1onfa2 65 ---VINVLENDMKKNNINIVTFADVVEIKKVSDKNLS-----------------IHLSDG 104 query 146 EYLKNALESDLQLFI- 160 :: :: :::::::: d1onfa2 105 RI-YE--HFDHVIYCV 117 HHsearch alignment (Probability: 0.09 E-value:0.01) query 20 LASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPL 79 :::::::::::::::::::::::::::: d1onfa2 32 YIAVELINVIKRLGIDSYIFARGNRILR-------------------------------- 59 query 80 SKMNLGGIGKKMLLEMMKEEKA 101 ::::::::::::::::::: d1onfa2 60 ---KFDESVINVLENDMKKNNI 78
Intermediate <-- 1.958 --> HitDALI alignment (Z-score: 8.5 Raw score:588.80) d1onfa2 1 fppvkgientissdeffnikeskKIGIVGSGYIAVELINVIKRLGIDSYIFARGnrILRK 60 ::::::::::::::::::::::::::::::: :::: d1fl2a1 1 ---------------------ayDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQ 37 d1onfa2 61 F----------------DESVINVLENDMKKNNINIVTFADVVEIKKVS--DKNLSIHLS 102 : :::::::::::::::::::::::::::::::: ::::::::: d1fl2a1 38 IldtvdienyisvpkteGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAveGGLHQIETA 97 d1onfa2 103 DGRIYEhFDHVIYCV--------------------------------------------- 117 :::::: :::::::: d1fl2a1 98 SGAVLK-ARSIIVATgaklpntnwlegavernrmgeiiidakcetnvkgvfaagdcttvp 156 d1onfa2 118 ---------------------------- 118 d1fl2a1 157 ykqiiiatgegakaslsafdylirtkta 184 FAST alignment (Normalized score: 8.50 Raw score:1247.00) d1onfa2 1 FPPVKGIENTISSDEFFNIKESK--KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL 58 :::::::::::::::::::::::::::::: ::: d1fl2a1 1 -----------------------AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFG 35 d1onfa2 59 RKF-----------------DESVINVLENDMKKNNINIVTFADVVEIK-KVSDK-NLSI 99 :: ::::::::::::::::::::::::::::: ::::: :::: d1fl2a1 36 GQ-ILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQI 94 d1onfa2 100 HLSDGRIYEHFDHVIYCV------------------------------------------ 117 :::::::: ::::::: d1fl2a1 95 ETASGAVL-KARSIIV--ATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGD 151 d1onfa2 118 --------------------------------- 118 d1fl2a1 152 CTTVPYKQIIIATGEGAKASLSAFDYLIRTKTA 184 TMalign alignment (TM-score: 0.63 Raw score:74.05) d1onfa2 1 -FPPVKGIENTISSDEFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR 59 :::::::::::::::::::::::::::::::: ::: d1fl2a1 1 A----------------------YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGG 36 d1onfa2 60 --K---------------FDESVINVLENDMKKNNINIVTFADVVEIK-KVSDK-NLSIH 100 : ::::::::::::: :::::::::::::::: ::::: ::::: d1fl2a1 37 QILDTVDIENYISVPKTEGQKLAGALKVHVD-EYDVDVIDSQSASKLIPAAVEGGLHQIE 95 d1onfa2 101 LSDGRIYEHFDHVIYC-----------------------------------------V-- 117 :::::::: ::::::: : d1fl2a1 96 TASGAVLK-ARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTT 154 d1onfa2 118 ------------------------------ 118 d1fl2a1 155 VPYKQIIIATGEGAKASLSAFDYLIRTKTA 184 HHsearch alignment (Probability: 0.99 E-value:0.00) d1onfa2 23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGN--RI------------LRKFDESVINV 68 ::::::::::::::::::::::::::::::::: :: ::::::::::: d1fl2a1 2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGA 61 d1onfa2 69 LENDMKKNNINIVTFADVVEIKK--VSDKNLSIHLSDGRIYEHFDHVIYCV 117 ::::::::::::::::::::::: :::::::::::::::::: ::::::: d1fl2a1 62 LKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKA-RSIIVAT 111