Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1onfa2 | Glutathione reductase | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
| Hit | d1k0ia1 | p-Hydroxybenzoate hydroxylase, PHBH | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
Query <-- 1.673 --> IntermediateDALI alignment (Z-score: 4.3 Raw score:336.20) query 1 ------------------GMENKKMNLLLfsgdydkALASLIIANAAREMEIEVTIFCAf 42 ::::::::::: ::::::::::::::::::::::: d1onfa2 1 fppvkgientissdeffnIKESKKIGIVG------sGYIAVELINVIKRLGIDSYIFAR- 53 query 43 wgLLLLrdpekasqedkslyeqafssltprEAEELplskmnlggigkkmllemmkeekap 102 :::: ::::: d1onfa2 54 --GNRI-----------------------lRKFDE------------------------s 64 query 103 KLSDLLSGARKKEVKFY--AXQLsveimgfkkeelfpevqiMDVKEYLknaLESDLQLF- 159 ::::::::::::::::: :::: ::::::: :::::::: d1onfa2 65 VINVLENDMKKNNINIVtfADVV-----eikkvsdknlsihLSDGRIY---EHFDHVIYc 116 query 160 i 160 d1onfa2 117 v 117 FAST alignment (Normalized score: 4.62 Raw score:632.20) query 1 -----------------GMEN-KKMNLLLFSGDYDK---ALASLIIANAAREMEIEVTIF 39 :::: ::::: ::::::::::::::::::::: d1onfa2 1 FPPVKGIENTISSDEFFNIKESKKIGI---------VGSGYIAVELINVIKRLGIDSYIF 51 query 40 CAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEE 99 :: d1onfa2 52 AR---------------------------------------------------------- 53 query 100 KAP-----------KLSDLLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIMDVKEYL 148 ::::::::::::::::: ::::: d1onfa2 54 ---GNRILRKFDESVINVLENDMKKNNINIV--------------------TFADV---- 86 query 149 KN--------------------ALESDLQLFI--- 160 :::::::: d1onfa2 87 --VEIKKVSDKNLSIHLSDGRIYEHFDHVI--YCV 117 TMalign alignment (TM-score: 0.39 Raw score:61.66) query 1 -------------------GMENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCA 41 :: :::::::: : ::::::::::::::::::::::: d1onfa2 1 FPPVKGIENTISSDEFFNIKE-SKKIGIVG-S-----GYIAVELINVIKRLGIDSYIFAR 53 query 42 FWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEEL-PLSKMNLGGIGKKMLLEMMKEEK 100 ::::: : :::: d1onfa2 54 ---GNRIL---------------------R--KFDES----------------------- 64 query 101 APKLS-DLLSGARKKEVKFYAXQLS------------VEIMGFKKEELFPEVQIMDV--K 145 :: ::::::::::::::::::: ::: : d1onfa2 65 ---VINVLENDMKKNNINIVTFADVVEIKKVSDKNLS-----------------IHLSDG 104 query 146 EYLKNALESDLQLFI- 160 :: :: :::::::: d1onfa2 105 RI-YE--HFDHVIYCV 117 HHsearch alignment (Probability: 0.09 E-value:0.01) query 20 LASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPL 79 :::::::::::::::::::::::::::: d1onfa2 32 YIAVELINVIKRLGIDSYIFARGNRILR-------------------------------- 59 query 80 SKMNLGGIGKKMLLEMMKEEKA 101 ::::::::::::::::::: d1onfa2 60 ---KFDESVINVLENDMKKNNI 78
Intermediate <-- 2.031 --> HitDALI alignment (Z-score: 6.3 Raw score:550.30) d1onfa2 1 fppvkgientissdeffnikeskKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR-iLR 59 ::::::::::::::::::::::::::::::::: :: d1k0ia1 1 --------------------mktQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPdyVL 40 d1onfa2 60 KFD--------------------------------------------------------- 62 ::: d1k0ia1 41 GRIragvleqgmvdllreagvdrrmardglvhegveiafagqrrridlkrlsggktvtvy 100 d1onfa2 63 --ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLS---DGRIYEhFDHVIYCV 117 :::::::::::::::::::::::::::::::::::::::: :::::: :::::::: d1k0ia1 101 gqTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFErdgERLRLD-CDYIAGCD 159 d1onfa2 118 ------------------------------------------------------------ 118 d1k0ia1 160 gfhgisrqsipaermqhgrlflagdaahivpptgakglnlaasdvstlyrlllkayregr 219 d1onfa2 118 ------------------------------------------------------------ 118 d1k0ia1 220 gellerysaiclrriwkaerfswwmtsvlhrfpdtdafsqriqqteleyylgseaglati 279 d1onfa2 118 ------------- 118 d1k0ia1 280 aenyvglpyeeie 292 FAST alignment (Normalized score: 5.35 Raw score:988.20) d1onfa2 1 FPPVKGIENTISSDEFFNIKESK---KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI 57 ::::::::::::::::::::::::::::::: d1k0ia1 1 -----------------------MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQ--- 34 d1onfa2 58 LRKF-------------------------------------------------------- 61 d1k0ia1 35 ----TPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKR 90 d1onfa2 62 -----------DESVINVLENDMKKNNINIVTFADVVEIKK-------VSDKNLSIHLS- 102 ::::::::::::::::::::::: :::::::::: d1k0ia1 91 LSGGKTVTVYGQTEVTRDLMEAREACGATTVYQA-------AEVRLHDLQGERPYVTF-E 142 d1onfa2 103 ---DGRIYEHFDHVIYCV------------------------------------------ 117 ::::: ::::::: d1k0ia1 143 RDGERLRL-DCDYIAG--CDGFHGISRQSIPAERMQHGRLFLAGDAAHIVPPTGAKGLNL 199 d1onfa2 118 ------------------------------------------------------------ 118 d1k0ia1 200 AASDVSTLYRLLLKAYREGRGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFSQ 259 d1onfa2 118 --------------------------------- 118 d1k0ia1 260 RIQQTELEYYLGSEAGLATIAENYVGLPYEEIE 292 TMalign alignment (TM-score: 0.62 Raw score:72.14) d1onfa2 1 --FPPVKGIENTISSDEFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI- 57 ::::::::::::::::::::::::::::::::::: d1k0ia1 1 MK----------------------TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDY 38 d1onfa2 58 LR-K-------------------------------------------------------- 60 :: : d1k0ia1 39 VLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVT 98 d1onfa2 61 ----FD-ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSD--GRIYEHFDHV 113 :: :: :::::::::::::::::::::::::::::::::::: :::::::::: d1k0ia1 99 VYGQTEV--TR-DLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYI 155 d1onfa2 114 IYC-V------------------------------------------------------- 117 ::: : d1k0ia1 156 AGCDGFHGISRQSIPAERMQHGRLFLAGDAAHIVPPTGAKGLNLAASDVSTLYRLLLKAY 215 d1onfa2 118 ------------------------------------------------------------ 118 d1k0ia1 216 REGRGELLERYSAICLRRIWKAERFSWWMTSVLHRFPDTDAFSQRIQQTELEYYLGSEAG 275 d1onfa2 118 ----------------- 118 d1k0ia1 276 LATIAENYVGLPYEEIE 292 HHsearch alignment (Probability: 0.98 E-value:0.00) d1onfa2 23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-------F-------------- 61 :::::::::::::::::::::::::::::::::::::: : d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVD 62 d1onfa2 62 ---------------------------------------DESVINVLENDMKKNNINIVT 82 ::::::::::::::::::::: d1k0ia1 63 RRMARDGLVHEGVEIAFAGQRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVY 122 d1onfa2 83 FADVVEIKKVSDKNLSIHL-SDGRI-YEHFDHVIYC 116 ::::::::::::::::::: ::::: :::::::::: d1k0ia1 123 QAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGC 158