Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1onfa2 | Glutathione reductase | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
| Hit | d1w4xa1 | Phenylacetone monooxygenase | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
Query <-- 1.673 --> IntermediateDALI alignment (Z-score: 4.3 Raw score:336.20) query 1 ------------------GMENKKMNLLLfsgdydkALASLIIANAAREMEIEVTIFCAf 42 ::::::::::: ::::::::::::::::::::::: d1onfa2 1 fppvkgientissdeffnIKESKKIGIVG------sGYIAVELINVIKRLGIDSYIFAR- 53 query 43 wgLLLLrdpekasqedkslyeqafssltprEAEELplskmnlggigkkmllemmkeekap 102 :::: ::::: d1onfa2 54 --GNRI-----------------------lRKFDE------------------------s 64 query 103 KLSDLLSGARKKEVKFY--AXQLsveimgfkkeelfpevqiMDVKEYLknaLESDLQLF- 159 ::::::::::::::::: :::: ::::::: :::::::: d1onfa2 65 VINVLENDMKKNNINIVtfADVV-----eikkvsdknlsihLSDGRIY---EHFDHVIYc 116 query 160 i 160 d1onfa2 117 v 117 FAST alignment (Normalized score: 4.62 Raw score:632.20) query 1 -----------------GMEN-KKMNLLLFSGDYDK---ALASLIIANAAREMEIEVTIF 39 :::: ::::: ::::::::::::::::::::: d1onfa2 1 FPPVKGIENTISSDEFFNIKESKKIGI---------VGSGYIAVELINVIKRLGIDSYIF 51 query 40 CAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEE 99 :: d1onfa2 52 AR---------------------------------------------------------- 53 query 100 KAP-----------KLSDLLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIMDVKEYL 148 ::::::::::::::::: ::::: d1onfa2 54 ---GNRILRKFDESVINVLENDMKKNNINIV--------------------TFADV---- 86 query 149 KN--------------------ALESDLQLFI--- 160 :::::::: d1onfa2 87 --VEIKKVSDKNLSIHLSDGRIYEHFDHVI--YCV 117 TMalign alignment (TM-score: 0.39 Raw score:61.66) query 1 -------------------GMENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCA 41 :: :::::::: : ::::::::::::::::::::::: d1onfa2 1 FPPVKGIENTISSDEFFNIKE-SKKIGIVG-S-----GYIAVELINVIKRLGIDSYIFAR 53 query 42 FWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEEL-PLSKMNLGGIGKKMLLEMMKEEK 100 ::::: : :::: d1onfa2 54 ---GNRIL---------------------R--KFDES----------------------- 64 query 101 APKLS-DLLSGARKKEVKFYAXQLS------------VEIMGFKKEELFPEVQIMDV--K 145 :: ::::::::::::::::::: ::: : d1onfa2 65 ---VINVLENDMKKNNINIVTFADVVEIKKVSDKNLS-----------------IHLSDG 104 query 146 EYLKNALESDLQLFI- 160 :: :: :::::::: d1onfa2 105 RI-YE--HFDHVIYCV 117 HHsearch alignment (Probability: 0.09 E-value:0.01) query 20 LASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPL 79 :::::::::::::::::::::::::::: d1onfa2 32 YIAVELINVIKRLGIDSYIFARGNRILR-------------------------------- 59 query 80 SKMNLGGIGKKMLLEMMKEEKA 101 ::::::::::::::::::: d1onfa2 60 ---KFDESVINVLENDMKKNNI 78
Intermediate <-- 2.045 --> HitDALI alignment (Z-score: 6.3 Raw score:568.30) d1onfa2 1 fppvkgientissdeffnikeskKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK 60 ::::::::::::::::::::::::::::::::::::: d1w4xa1 1 ---------------rrqppeevDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGV 45 d1onfa2 61 F----------------------------------------DESVINVLENDMKknnINI 80 : ::::::::::::: ::: d1w4xa1 46 WywnrypgarcdiesieycysfseevlqewnwteryasqpeILRYINFVADKFD-lrSGI 104 d1onfa2 81 VTFADVVEIKKVS-DKNLSIHLSDGRIYEhFDHVIYCV---------------------- 117 ::::::::::::: ::::::::::::::: :::::::: d1w4xa1 105 TFHTTVTAAAFDEaTNTWTVDTNHGDRIR-ARYLIMASgqlsdaltgalfkidirgvgnv 163 d1onfa2 118 ------------------------------------------------------------ 118 d1w4xa1 164 alkekwaagprtylglstagfpnlffiagpgspsalsnmlvsieqhvewvtdhiaymfkn 223 d1onfa2 118 ------------------------------------------------------------ 118 d1w4xa1 224 gltrseavlekedewvehvneiadetlypmtaswytganvpgkprvfmlyvggfhryrqi 283 d1onfa2 118 --------------- 118 d1w4xa1 284 cdevaakgyegfvlt 298 FAST alignment (Normalized score: 5.92 Raw score:1106.00) d1onfa2 1 FPPVKGIENTISSDEFFNIKESK--------KIGIVGSGYIAVELINVIKRLGIDSYIFA 52 ::::::::::::::::::::::::::::: d1w4xa1 1 -----------------------RRQPPEEVDVLVVGAGFSGLYALYRLRELGRSVHVIE 37 d1onfa2 53 RGNRILRKF---------------------------------------DESVINVLENDM 73 ::::::: :::::::::::: d1w4xa1 38 TAGDVGG--VWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVA 95 d1onfa2 74 KKNNI---NIVTFADVVEIKKVSD-KNLSIHLSDGRIYEHFDHVIYCV------------ 117 :::: :::::::::::::::: :::::::::::: :::::::: d1w4xa1 96 DKFD-LRSGITFHTTVTAAAFDEATNTWTVDTNHGDR-IRARYLIM--ASGQLSDALTGA 151 d1onfa2 118 ------------------------------------------------------------ 118 d1w4xa1 152 LFKIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVE 211 d1onfa2 118 ------------------------------------------------------------ 118 d1w4xa1 212 WVTDHIAYMFKNGLTRSEAVLEKEDEWVEHVNEIADETLYPMTASWYTGANVPGKPRVFM 271 d1onfa2 118 --------------------------- 118 d1w4xa1 272 LYVGGFHRYRQICDEVAAKGYEGFVLT 298 TMalign alignment (TM-score: 0.64 Raw score:75.45) d1onfa2 1 -------FPPVKGIENTISSDEFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFAR 53 ::::::::::::::::::::::::::::::: d1w4xa1 1 RRQPPEE----------------------VDVLVVGAGFSGLYALYRLRELGRSVHVIET 38 d1onfa2 54 GNRILR-K-----------------------------------------FD-ESVINVLE 70 :::::: : :: :::::::: d1w4xa1 39 AGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADKF 98 d1onfa2 71 NDM-KKNNINIVTFADVVEIKKVS-DKNLSIHLSDGRIYEHFDHVIYC-V---------- 117 :: : ::::::::::::::: ::::::::::::::: ::::::: : d1w4xa1 99 -DLRS----GITFHTTVTAAAFDEATNTWTVDTNHGDRIR-ARYLIMASGQLSDALTGAL 152 d1onfa2 118 ------------------------------------------------------------ 118 d1w4xa1 153 FKIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEW 212 d1onfa2 118 ------------------------------------------------------------ 118 d1w4xa1 213 VTDHIAYMFKNGLTRSEAVLEKEDEWVEHVNEIADETLYPMTASWYTGANVPGKPRVFML 272 d1onfa2 118 -------------------------- 118 d1w4xa1 273 YVGGFHRYRQICDEVAAKGYEGFVLT 298 HHsearch alignment (Probability: 0.99 E-value:0.00) d1onfa2 21 ESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRK-------------------- 60 :::::::::::::::::::::::::::::::::::::::: d1w4xa1 6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCY 65 d1onfa2 61 -----------------FDESVINVLENDMKKNNI--NIVTFADVVEIKKVSD-KNLSIH 100 :::::::::::::::::: :::::::::::::::: :::::: d1w4xa1 66 SFSEEVLQEWNWTERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVD 125 d1onfa2 101 LSDGRIYEHFDHVIYCV 117 :::::::: :::::::: d1w4xa1 126 TNHGDRIR-ARYLIMAS 141