Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T517_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1onfa2 | Glutathione reductase | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
| Hit | d1pn0a1 | Phenol hydroxylase | FAD/NAD(P)-binding domain | FAD/NAD(P)-binding domain | α/β |
Query <-- 1.673 --> IntermediateDALI alignment (Z-score: 4.3 Raw score:336.20) query 1 ------------------GMENKKMNLLLfsgdydkALASLIIANAAREMEIEVTIFCAf 42 ::::::::::: ::::::::::::::::::::::: d1onfa2 1 fppvkgientissdeffnIKESKKIGIVG------sGYIAVELINVIKRLGIDSYIFAR- 53 query 43 wgLLLLrdpekasqedkslyeqafssltprEAEELplskmnlggigkkmllemmkeekap 102 :::: ::::: d1onfa2 54 --GNRI-----------------------lRKFDE------------------------s 64 query 103 KLSDLLSGARKKEVKFY--AXQLsveimgfkkeelfpevqiMDVKEYLknaLESDLQLF- 159 ::::::::::::::::: :::: ::::::: :::::::: d1onfa2 65 VINVLENDMKKNNINIVtfADVV-----eikkvsdknlsihLSDGRIY---EHFDHVIYc 116 query 160 i 160 d1onfa2 117 v 117 FAST alignment (Normalized score: 4.62 Raw score:632.20) query 1 -----------------GMEN-KKMNLLLFSGDYDK---ALASLIIANAAREMEIEVTIF 39 :::: ::::: ::::::::::::::::::::: d1onfa2 1 FPPVKGIENTISSDEFFNIKESKKIGI---------VGSGYIAVELINVIKRLGIDSYIF 51 query 40 CAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPLSKMNLGGIGKKMLLEMMKEE 99 :: d1onfa2 52 AR---------------------------------------------------------- 53 query 100 KAP-----------KLSDLLSGARKKEVKFYAXQLSVEIMGFKKEELFPEVQIMDVKEYL 148 ::::::::::::::::: ::::: d1onfa2 54 ---GNRILRKFDESVINVLENDMKKNNINIV--------------------TFADV---- 86 query 149 KN--------------------ALESDLQLFI--- 160 :::::::: d1onfa2 87 --VEIKKVSDKNLSIHLSDGRIYEHFDHVI--YCV 117 TMalign alignment (TM-score: 0.39 Raw score:61.66) query 1 -------------------GMENKKMNLLLFSGDYDKALASLIIANAAREMEIEVTIFCA 41 :: :::::::: : ::::::::::::::::::::::: d1onfa2 1 FPPVKGIENTISSDEFFNIKE-SKKIGIVG-S-----GYIAVELINVIKRLGIDSYIFAR 53 query 42 FWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEEL-PLSKMNLGGIGKKMLLEMMKEEK 100 ::::: : :::: d1onfa2 54 ---GNRIL---------------------R--KFDES----------------------- 64 query 101 APKLS-DLLSGARKKEVKFYAXQLS------------VEIMGFKKEELFPEVQIMDV--K 145 :: ::::::::::::::::::: ::: : d1onfa2 65 ---VINVLENDMKKNNINIVTFADVVEIKKVSDKNLS-----------------IHLSDG 104 query 146 EYLKNALESDLQLFI- 160 :: :: :::::::: d1onfa2 105 RI-YE--HFDHVIYCV 117 HHsearch alignment (Probability: 0.09 E-value:0.01) query 20 LASLIIANAAREMEIEVTIFCAFWGLLLLRDPEKASQEDKSLYEQAFSSLTPREAEELPL 79 :::::::::::::::::::::::::::: d1onfa2 32 YIAVELINVIKRLGIDSYIFARGNRILR-------------------------------- 59 query 80 SKMNLGGIGKKMLLEMMKEEKA 101 ::::::::::::::::::: d1onfa2 60 ---KFDESVINVLENDMKKNNI 78
Intermediate <-- 2.311 --> HitDALI alignment (Z-score: 4.8 Raw score:540.60) d1onfa2 1 fppvkgientissdeffnikeskKIGIVGSGYIAVELINVIKRLG-----IDSYIFARGN 55 :::::::::::::::::::::: :::::::::: d1pn0a1 1 ---------------tkysesycDVLIVGAGPAGLMAARVLSEYVrqkpdLKVRIIDKRS 45 d1onfa2 56 RilRKFD----------------------------------------------------- 62 : :::: d1pn0a1 46 T--KVYNgqadglqcrtleslknlgladkilseandmstialynpdenghirrtdripdt 103 d1onfa2 63 --------------ESVINVLENDMKK---NNINIVTFADVVEIKKVS-------DKNLS 98 ::::::::::::: :::::::::::::::::: ::::: d1pn0a1 104 lpgisryhqvvlhqGRIERRILDSIAEisdTRIKVERPLIPEKMEIDSskaedpeAYPVT 163 d1onfa2 99 IHLS--------------------------------------------DGRIYEhFDHVI 114 :::: :::::: ::::: d1pn0a1 164 MTLRymsedestplqfghktenglfrsnlqtqeeedanyrlpegkeagEIETVH-CKYVI 222 d1onfa2 115 YCV--------------------------------------------------------- 117 ::: d1pn0a1 223 GCDgghswvrrtlgfemivtekfskdervfiagdachthspkagqgmntsmmdtynlgwk 282 d1onfa2 118 ------------------------------------------------------------ 118 d1pn0a1 283 lglvltgrakrdilktyeeerqpfaqalidfdhqfsrlfsgrpakdvademgvsmdvfke 342 d1onfa2 118 ------------------ 118 d1pn0a1 343 afvkgnefasgtainyde 360 FAST alignment (Normalized score: 5.01 Raw score:1027.00) d1onfa2 1 FPPVKGIENTISSDEFFNIKESK--------KIGIVGSGYIAVELINVIKR-----LGID 47 :::::::::::::::::::: :::: d1pn0a1 1 -----------------------TKYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLK 37 d1onfa2 48 SYIFARGNRILRKF---------------------------------------------- 61 :::::::::::: d1pn0a1 38 VRIIDKRSTKVY--NGQADGLQCRTLESLKNLGLADKILSEANDMSTIALYNPDENGHIR 95 d1onfa2 62 ---------------------DESVINVLENDMKK---NNINIVTFADVVEIKKVS---- 93 :::::::::::::: :::::::::::::::: d1pn0a1 96 RTDRIPDTLPGISRYHQVVLHQGRIERRILDSIAEISDTRIKVERPLIPEKMEI--DSSK 153 d1onfa2 94 -----DKNLSIHLS---------------------------------------------D 103 :::::::: : d1pn0a1 154 AEDPEAYPVTMTL-RYMSEDESTPLQFGHKTENGLFRSNLQTQEEEDANYRLPEGKEAGE 212 d1onfa2 104 GRIYEHFDHVIYCV---------------------------------------------- 117 ::: :::::::: d1pn0a1 213 IET-VHCKYVIG--CDGGHSWVRRTLGFEMIVTEKFSKDERVFIAGDACHTHSPKAGQGM 269 d1onfa2 118 ------------------------------------------------------------ 118 d1pn0a1 270 NTSMMDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRLFSGRPAKDV 329 d1onfa2 118 ------------------------------- 118 d1pn0a1 330 ADEMGVSMDVFKEAFVKGNEFASGTAINYDE 360 TMalign alignment (TM-score: 0.35 Raw score:40.86) d1onfa2 1 ------------------------------------------FP-PV------------- 4 :: :: d1pn0a1 1 TKYSESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRT 60 d1onfa2 5 ------------------------------------------------------------ 5 d1pn0a1 61 LESLKNLGLADKILSEANDMSTIALYNPDENGHIRRTDRIPDTLPGISRYHQVVLHQGRI 120 d1onfa2 5 ----K-----------GIENTISSDE-----------------FF--------------- 17 : :::::::::: :: d1pn0a1 121 ERRILDSIAEISDTRIKVERPLIPEKMEIDSSKAEDPEAYPVTMTLRYMSEDESTPLQFG 180 d1onfa2 18 ----------------------------------NIKESKKIGIVGSGYIAVELINV--- 40 ::::::::::::::::::::::: d1pn0a1 181 HKTENGLFRSNLQTQEEEDANYRLPEGKEAGEIETVHCKYVIGCDGGHSWVRRTLGFEMI 240 d1onfa2 41 ----IKRLGIDSYIFARGNRILR----KFDESVINVLENDMKKNNINIVTFAD-VVEIKK 91 ::::::::::::::::: : :::: d1pn0a1 241 VTEKFSKDERVFIAGDACHTH-SPKAG----------------------QGMNT------ 271 d1onfa2 92 VSDKNLSIHLSDGR-IY--E--HF--D--------------------------------- 111 :: : :: : :: : d1pn0a1 272 --------SM---MDTYNLGWKLGLVLTGRAKRDILKTYEEERQPFAQALIDFDHQFSRL 320 d1onfa2 112 ----------------------------------------HVIYCV 117 d1pn0a1 321 FSGRPAKDVADEMGVSMDVFKEAFVKGNEFASGTAINYDE------ 360 HHsearch alignment (Probability: 0.97 E-value:0.00) d1onfa2 23 KKIGIVGSGYIAVELINVIKR-----LGIDSYIFARGNRILRKF-DESVINVLENDMKKN 76 ::::::::::::::::::::: :::::::::::::::::: ::::::::::::::: d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNGQADGLQCRTLESLKNL 67 d1onfa2 77 NI 78 :: d1pn0a1 68 GL 69