HorA Server Transitive Detail

Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets. J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity. Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu


Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL


Query <-- 1.000 --> Intermediate <-- 0.928 --> Hit

HHsearch
probability
HHsearch
probability

The query (T0542_Ad1.pdb) is transitively linked to the hit (d1o7ja_) through the intermediate protein (d1emsa2) by significant HHsearch probability (>0.9).

  SCOP Id Protein SCOP Superfamily SCOP Fold SCOP
Class
Intermediate d1emsa2 NIT-​FHIT fusion protein,​ N-​terminal domainCarbon-​nitrogen hydrolaseCarbon-​nitrogen hydrolaseα+β
Hit d1o7ja_ Asparaginase type IIGlutaminase/​AsparaginaseGlutaminase/​Asparaginaseα/β

Supporting Alignments

Query <-- 1.000 --> Intermediate
DALI alignment (Z-score: 25.8 Raw score:2597.80) query 1 --SLQLRLALNQIDSTvGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGyPVED-LAL 57 :::::::::::::: :::::::::::::::::::::::::::::::::: :::: ::: d1emsa2 1 maTGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFI-GLNKnEQI 58 query 58 RssFVEASR-TALRELAARLAeegFGELPVLV-GYLDRSEsaqpkygqPAGA-PRNAAAV 114 : :::::: ::::::::::: :::::::: ::::::: :::: ::::::: d1emsa2 59 D--LAMATDcEYMEKYRELAR---KHNIWLSLgGLHHKDP--------SDAAhPWNTHLI 105 query 115 LH-RGRVALTFAKHHLPNY-----gvFDEFRYFVPG-DTMPIVRLHGVDIALAICEDLWQ 167 :: :::::::::::::::: :::::::::: ::::::::::::::::::::::: d1emsa2 106 IDsDGVTRAEYNKLHLFDLeipgkvrLMESEFSKAGtEMIPPVDTPIGRLGLSICYDVRF 165 query 168 DGgRVPAARSAGAGLLLSVNASPYErdkdDTRLELVRKRAQEAGCTTAYLAMIGG-QDEL 226 :: :::::::::::::::::::::: :::::::::::::::::::::::::: :::: d1emsa2 166 PE-LSLWNRKRGAQLLSFPSAFTLN-tglAHWETLLRARAIENQCYVVAAAQTGAhNPKR 223 query 227 VFDGDSIVVDRDGEVVARAPQfSEGCVVLDLDLPaaeaepptgvvddglridrlviseep 286 ::::::::::::::::::::: :::::::::::: d1emsa2 224 QSYGHSMVVDPWGAVVAQCSE-RVDMCFAEIDLS-------------------------- 256 query 287 lpayeaelaggyadrl 302 d1emsa2 257 -yvdtlremqpvfshr 271 FAST alignment (Normalized score: 18.48 Raw score:5286.00) query 1 --SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLAL- 57 ::::::::::::: ::::::::::::::::::::::::::::::::: d1emsa2 1 MATGRHFIAVCQMTS-DNDLEKNFQAAKNMIERAGEKKCEMVFLPECFD----------F 49 query 58 -------RSSFVEASR-TALRELAARLAEEGFGELPVLV-GYLDRSESAQPKYGQPA--- 105 ::::::::: :::::::::::: ::::::: ::::::: d1emsa2 50 IGLNKNEQIDLAMATDCEYMEKYRELARK---HNIWLSLGGLHHKDP----------SDA 96 query 106 GAPRNAAAVL-HRGRVALTFAKHHLPNYGV---------FDEFRYFVPGDTM-PIVRLHG 154 :::::::::: ::::::::::::::: ::::::::::::: ::::: d1emsa2 97 AHPWNTHLIIDSDGVTRAEYNKLHLF----DLEIPGKVRLMESEFSKAGTEMIPPVDT-- 150 query 155 --VDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKD-----DTRLELVRKRA 207 :::::::::::::: ::::::::::::::::::::: ::::::::::: d1emsa2 151 PIGRLGLSICYDVRFP-ELSLWNRKRGAQLLSFPSAFT------LNTGLAHWETLLRARA 203 query 208 QEAGCTTAYLAMIGG-QDELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEP 266 ::::::::::::::: :::::::::::::::::::::::: ::::::::::: d1emsa2 204 IENQCYVVAAAQTGAHNPKRQSYGHSMVVDPWGAVVAQCS-ERVDMCFAEID-------- 254 query 267 PTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADRL----------------- 302 d1emsa2 255 ------------------------------------LSYVDTLREMQPVFSHR 271 TMalign alignment (TM-score: 0.72 Raw score:216.66) query 1 --SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALR 58 :::::::::::::: :::::::::::::::::::::::::::::::::: :::::::: d1emsa2 1 MATGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFI-GLNKNEQI 58 query 59 SSFVEASRTALRELAARLAEEGFGELPVLV-GYLDRSESAQPKYGQPAG-APRNAAAVLH 116 ::::::::::::::::::: :: :::::: :::::::: :: :::::::::: d1emsa2 59 -DLAMATDCEYMEKYRELAR-KH-NIWLSLGGLHHKDPS--------DAAHPWNTHLIID 107 query 117 -RGRVALTFAKHHLPNY-----GVFDEFRYFVPG-DTMPIVRLHGVDIALAICEDLWQDG 169 :::::::::::::::: :::::::::::: ::::::::::::::::::::::::: d1emsa2 108 SDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPE 167 query 170 GRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQ-DELVF 228 : ::::::::::::::::::::::: :::::::::::::::::::::::::::: ::::: d1emsa2 168 L-SLWNRKRGAQLLSFPSAFTLNTG-LAHWETLLRARAIENQCYVVAAAQTGAHNPKRQS 225 query 229 DGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAE------------AEPPTGVVDDGLR 276 :::::::::::::::::: :::::::::::::::: d1emsa2 226 YGHSMVVDPWGAVVAQCS-ERVDMCFAEIDLSYVDTLREMQPVFSHR------------- 271 query 277 IDRLVISEEPLPAYEAELAGGYADRL 302 d1emsa2 272 -------------------------- 272 HHsearch alignment (Probability: 1.00 E-value:0.00) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 :::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: d1emsa2 3 TGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLA 61 query 61 FVEASR--TALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-R 117 :::::: :::::::::: :::::::::::::: :::::::::::::: : d1emsa2 62 MATDCEYMEKYRELARKH------NIWLSLGGLHHKDP------SDAAHPWNTHLIIDSD 109 query 118 GRVALTFAKHHL-----PNYGVFDEFRYFVPGDTM-PIVRLHGVDIALAICEDLWQDGGR 171 :::::::::::: :::::::::::::::::: :::::::::::::::::::::: : d1emsa2 110 GVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPE-L 168 query 172 VPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGG-QDELVFDG 230 ::::::::::::::::::::::: ::::::::::::::::::::::::::: :::::::: d1emsa2 169 SLWNRKRGAQLLSFPSAFTLNTG-LAHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYG 227 query 231 DSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGL 275 ::::::::::::::::: ::::::::::::::::::::::::::: d1emsa2 228 HSMVVDPWGAVVAQCSE-RVDMCFAEIDLSYVDTLREMQPVFSHR 271
Intermediate <-- 0.928 --> Hit
DALI alignment (Z-score: 1.6 Raw score:242.80) d1emsa2 1 ------------------------------------------------------------ 1 d1o7ja_ 1 klpnivilatggtiagsaatgtqttgykagalgvdtlinavpevkklanvkgeqfsnmas 60 d1emsa2 1 ---matgrhfiavcqmtsdndleknfqaaknmieragekkcemvflpecfdfiglnkneq 57 d1o7ja_ 61 enmtgdvvlklsqrvnellarddvdgvvithgtdtveesayflhltvksdkpvvfvaamr 120 d1emsa2 58 idlamatdceymekyrelarkhniwlslgglhhkdpsdaahpwnthliidsdgvtraeyn 117 d1o7ja_ 121 pataisadgpmnlleavrvagdkqsrgrgvmvvindrigsaryitktnastldtfranee 180 d1emsa2 118 klhlfdleipgkvrlmesefskagtemippvdtpIGRLGLSICYdvRFPELSLWNRKRGA 177 :::::::::: :::::::::::::: d1o7ja_ 181 gylgviignriyyqnridklhttrsvfdvrgltsLPKVDILYGYqdDPEYLYDAAIQHGV 240 d1emsa2 178 QLLSFPSAFtlntglahWETLLRARAIENQ---CYVVAAA-QTGAhnpkrqsyghsmvvd 233 ::::::::: ::::::::::::: ::::::: :::: d1o7ja_ 241 KGIVYAGMG-----agsVSVRGIAGMRKALekgVVVMRSTrTGNG--------------- 280 d1emsa2 234 pwgavvAQCS-----------ervdmcfaeIDLSYvdtlremqpvfshr 271 :::: ::::: d1o7ja_ 281 ----ivPPDEelpglvsdslnpaharillmLALTRtsdpkviqeyfhty 325 FAST alignment (Normalized score: 1.38 Raw score:408.80) d1emsa2 1 MATGRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDL 60 d1o7ja_ 1 ------------------------------------------------------------ 1 d1emsa2 61 AMATDCEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLH 120 d1o7ja_ 1 ------------------------------------------------------------ 1 d1emsa2 121 LFDLEIPGKVRLMESEFSKAGTEMIPPVDT------------------------------ 150 d1o7ja_ 1 ------------------------------KLPNIVILATGGTIAGSAATGTQTTGYKAG 30 d1emsa2 151 ------------------------------------------------------------ 151 d1o7ja_ 31 ALGVDTLINAVPEVKKLANVKGEQFSNMASENMTGDVVLKLSQRVNELLARDDVDGVVIT 90 d1emsa2 151 ------------------------------------------------------------ 151 d1o7ja_ 91 HGTDTVEESAYFLHLTVKSDKPVVFVAAMRPATAISADGPMNLLEAVRVAGDKQSRGRGV 150 d1emsa2 151 ------------------------------------------------------------ 151 d1o7ja_ 151 MVVINDRIGSARYITKTNASTLDTFRANEEGYLGVIIGNRIYYQNRIDKLHTTRSVFDVR 210 d1emsa2 151 ---PIGRLGLSICYDV----RFPELSLWNRKRGAQLLSFPSAFTLNT------GLAHWET 197 ::::::::: :::::::::::::::::::: ::::::: d1o7ja_ 211 GLTSLPKVDILY----GYQDDPEYLYDAAIQHGVKGIVYA-------GMGAGSVSVRGIA 259 d1emsa2 198 LLRARAIENQCYVVAAAQTGAHNPKRQSYGHSMVVDPWGAVVAQCS-ERVDMCFAEIDLS 256 :::::: :::::::::: :::::: d1o7ja_ 260 GMRKAL-EKGVVVMRST-----------------------------RTGNGIV------- 282 d1emsa2 257 YVDTLREMQPVFSHR------------------------------------------- 271 d1o7ja_ 283 ---------------PPDEELPGLVSDSLNPAHARILLMLALTRTSDPKVIQEYFHTY 325 TMalign alignment (TM-score: 0.33 Raw score:89.48) d1emsa2 1 MAT-GRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMV-FL-PECFDFIG----LN 53 ::: ::: : :::::::: :: d1o7ja_ 1 KLPN-----------------------------------IVIL-ATGGTIAGSAATGTQT 24 d1emsa2 54 KNEQIDLAMATD-CEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVT 112 ::::: :: :: :::::::::: :::: :: :: d1o7ja_ 25 TGYKA-GA--LGV--DTLINAVPEV-KKLA-----------------------NV---KG 52 d1emsa2 113 RAEYNKLHLFDLEIPGKVRLMES--EFSKAGTEM--IPP-VD--TPIGRLGLSI-C-YDV 163 :::::::::: :: ::::: ::: :: :::::::::: : ::: d1o7ja_ 53 -EQFSNMASEN----------MTGD----VVLKLSQRVNELLARDDVDGVVITHGTDTVE 97 d1emsa2 164 RF-PELSLWNRKRGAQLLSFPSAFT--------------------------LNTGLAHWE 196 :: ::::::: : :::::::::::: d1o7ja_ 98 ESAYFLHLTV-K-SDKPVVFVAAMRPATAISADGPMNLLEAVRVAGDKQSR--------- 146 d1emsa2 197 TLLRARAIENQCYVVAAAQ-----------TGAHNPKRQSYGHSMVV--DPWGAVVAQCS 243 :::::::::: :::::::::: ::::::: d1o7ja_ 147 ---------GRGVMVVINDRIGSARYITKT-------NASTLDTFRANE--EGYLGVI-- 186 d1emsa2 244 ERVDMCFAEIDLSYVDTLREMQPV-FSHR------------------------------- 271 ::::::: :: :: :::: :::: d1o7ja_ 187 ----IGNRIYY--QN--RI-DKLHTTRSVFDVRGLTSLPKVDILYGYQDDPEYLYDAAIQ 237 d1emsa2 272 ------------------------------------------------------------ 272 d1o7ja_ 238 HGVKGIVYAGMGAGSVSVRGIAGMRKALEKGVVVMRSTRTGNGIVPPDEELPGLVSDSLN 297 d1emsa2 272 ---------------------------- 272 d1o7ja_ 298 PAHARILLMLALTRTSDPKVIQEYFHTY 325 HHsearch alignment (Probability: 0.93 E-value:0.00) d1emsa2 152 IGRLGLSICYDVRFPELSLWNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQCYVV 211 :::::::::::::::::::::::::::::::: :::::::::::::: :::::::::::: d1o7ja_ 215 LPKVDILYGYQDDPEYLYDAAIQHGVKGIVYA-GMGAGSVSVRGIAG-MRKALEKGVVVM 272 d1emsa2 212 AAAQTGA 218 ::::::: d1o7ja_ 273 RSTRTGN 279