Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1emsa2 | NIT-FHIT fusion protein, N-terminal domain | Carbon-nitrogen hydrolase | Carbon-nitrogen hydrolase | α+β |
| Hit | d1uf3a_ | Hypothetical protein TT1561 | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
Query <-- 1.000 --> IntermediateDALI alignment (Z-score: 25.8 Raw score:2597.80) query 1 --SLQLRLALNQIDSTvGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGyPVED-LAL 57 :::::::::::::: :::::::::::::::::::::::::::::::::: :::: ::: d1emsa2 1 maTGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFI-GLNKnEQI 58 query 58 RssFVEASR-TALRELAARLAeegFGELPVLV-GYLDRSEsaqpkygqPAGA-PRNAAAV 114 : :::::: ::::::::::: :::::::: ::::::: :::: ::::::: d1emsa2 59 D--LAMATDcEYMEKYRELAR---KHNIWLSLgGLHHKDP--------SDAAhPWNTHLI 105 query 115 LH-RGRVALTFAKHHLPNY-----gvFDEFRYFVPG-DTMPIVRLHGVDIALAICEDLWQ 167 :: :::::::::::::::: :::::::::: ::::::::::::::::::::::: d1emsa2 106 IDsDGVTRAEYNKLHLFDLeipgkvrLMESEFSKAGtEMIPPVDTPIGRLGLSICYDVRF 165 query 168 DGgRVPAARSAGAGLLLSVNASPYErdkdDTRLELVRKRAQEAGCTTAYLAMIGG-QDEL 226 :: :::::::::::::::::::::: :::::::::::::::::::::::::: :::: d1emsa2 166 PE-LSLWNRKRGAQLLSFPSAFTLN-tglAHWETLLRARAIENQCYVVAAAQTGAhNPKR 223 query 227 VFDGDSIVVDRDGEVVARAPQfSEGCVVLDLDLPaaeaepptgvvddglridrlviseep 286 ::::::::::::::::::::: :::::::::::: d1emsa2 224 QSYGHSMVVDPWGAVVAQCSE-RVDMCFAEIDLS-------------------------- 256 query 287 lpayeaelaggyadrl 302 d1emsa2 257 -yvdtlremqpvfshr 271 FAST alignment (Normalized score: 18.48 Raw score:5286.00) query 1 --SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLAL- 57 ::::::::::::: ::::::::::::::::::::::::::::::::: d1emsa2 1 MATGRHFIAVCQMTS-DNDLEKNFQAAKNMIERAGEKKCEMVFLPECFD----------F 49 query 58 -------RSSFVEASR-TALRELAARLAEEGFGELPVLV-GYLDRSESAQPKYGQPA--- 105 ::::::::: :::::::::::: ::::::: ::::::: d1emsa2 50 IGLNKNEQIDLAMATDCEYMEKYRELARK---HNIWLSLGGLHHKDP----------SDA 96 query 106 GAPRNAAAVL-HRGRVALTFAKHHLPNYGV---------FDEFRYFVPGDTM-PIVRLHG 154 :::::::::: ::::::::::::::: ::::::::::::: ::::: d1emsa2 97 AHPWNTHLIIDSDGVTRAEYNKLHLF----DLEIPGKVRLMESEFSKAGTEMIPPVDT-- 150 query 155 --VDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKD-----DTRLELVRKRA 207 :::::::::::::: ::::::::::::::::::::: ::::::::::: d1emsa2 151 PIGRLGLSICYDVRFP-ELSLWNRKRGAQLLSFPSAFT------LNTGLAHWETLLRARA 203 query 208 QEAGCTTAYLAMIGG-QDELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEP 266 ::::::::::::::: :::::::::::::::::::::::: ::::::::::: d1emsa2 204 IENQCYVVAAAQTGAHNPKRQSYGHSMVVDPWGAVVAQCS-ERVDMCFAEID-------- 254 query 267 PTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADRL----------------- 302 d1emsa2 255 ------------------------------------LSYVDTLREMQPVFSHR 271 TMalign alignment (TM-score: 0.72 Raw score:216.66) query 1 --SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALR 58 :::::::::::::: :::::::::::::::::::::::::::::::::: :::::::: d1emsa2 1 MATGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFI-GLNKNEQI 58 query 59 SSFVEASRTALRELAARLAEEGFGELPVLV-GYLDRSESAQPKYGQPAG-APRNAAAVLH 116 ::::::::::::::::::: :: :::::: :::::::: :: :::::::::: d1emsa2 59 -DLAMATDCEYMEKYRELAR-KH-NIWLSLGGLHHKDPS--------DAAHPWNTHLIID 107 query 117 -RGRVALTFAKHHLPNY-----GVFDEFRYFVPG-DTMPIVRLHGVDIALAICEDLWQDG 169 :::::::::::::::: :::::::::::: ::::::::::::::::::::::::: d1emsa2 108 SDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPE 167 query 170 GRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQ-DELVF 228 : ::::::::::::::::::::::: :::::::::::::::::::::::::::: ::::: d1emsa2 168 L-SLWNRKRGAQLLSFPSAFTLNTG-LAHWETLLRARAIENQCYVVAAAQTGAHNPKRQS 225 query 229 DGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAE------------AEPPTGVVDDGLR 276 :::::::::::::::::: :::::::::::::::: d1emsa2 226 YGHSMVVDPWGAVVAQCS-ERVDMCFAEIDLSYVDTLREMQPVFSHR------------- 271 query 277 IDRLVISEEPLPAYEAELAGGYADRL 302 d1emsa2 272 -------------------------- 272 HHsearch alignment (Probability: 1.00 E-value:0.00) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 :::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: d1emsa2 3 TGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLA 61 query 61 FVEASR--TALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-R 117 :::::: :::::::::: :::::::::::::: :::::::::::::: : d1emsa2 62 MATDCEYMEKYRELARKH------NIWLSLGGLHHKDP------SDAAHPWNTHLIIDSD 109 query 118 GRVALTFAKHHL-----PNYGVFDEFRYFVPGDTM-PIVRLHGVDIALAICEDLWQDGGR 171 :::::::::::: :::::::::::::::::: :::::::::::::::::::::: : d1emsa2 110 GVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPE-L 168 query 172 VPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGG-QDELVFDG 230 ::::::::::::::::::::::: ::::::::::::::::::::::::::: :::::::: d1emsa2 169 SLWNRKRGAQLLSFPSAFTLNTG-LAHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYG 227 query 231 DSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGL 275 ::::::::::::::::: ::::::::::::::::::::::::::: d1emsa2 228 HSMVVDPWGAVVAQCSE-RVDMCFAEIDLSYVDTLREMQPVFSHR 271
Intermediate <-- 0.935 --> HitDALI alignment (Z-score: 8.0 Raw score:835.30) d1emsa2 1 matGRHFIAVCQMTSdndlekNFQAAKNMIERAGEKKCEMVFLPECFDFIGlnkneqidL 60 :::::::::::: :::::::::::::::::::::::::::::: : d1uf3a_ 1 mrrTVRYILATSNPM-----gDLEALEKFVKLAPDTGADAIALIGNLMPKA--------A 47 d1emsa2 61 AMATdcEYMEKYRELArkhNIWLSLGG---LHHKdpsdaahPWNT--hliidsDGVTRAE 115 :::: :::::::::: :::::::: :::: :::: ::::::: d1uf3a_ 48 KSRD-yAAFFRILSEA---HLPTAYVPgpqDAPI-------WEYLreaanvelVHPEMRN 96 d1emsa2 116 ynklhlfdleipgkvrlmesefskagtemiPPVDTP-iGRLGLSICYD------------ 162 :::::: :::::::::: d1uf3a_ 97 ---------------------------vheTFTFWRgpYLVAGVGGEIadegepeeheal 129 d1emsa2 163 ----vRFPELSLWnRKRG---aQLLSFP-saftlntGLAHwETLLRARAIENQC-YVVAa 213 :::::::: :::: :::::: :::: ::::::::::::: :::: d1uf3a_ 130 rypawVAEYRLKA-LWELkdypKIFLFHtmpyhkglNEQG-SHEVAHLIKTHNPlLVLV- 186 d1emsa2 214 AQTGahnpkrqsyghsmvvdpWGAVVAQC-seRVDMCFAEIDlsyvdtlremqpvfshr 271 :::: :::::::: :::::::::: d1uf3a_ 187 AGKG----------qkhemlgASWVVVPGdlsEGEYSLLDLR-------arkletgnvr 228 FAST alignment (Normalized score: 5.14 Raw score:1279.00) d1emsa2 1 MATGR-----HFIAVCQMTSDNDLEK-----NFQAAKNMIERAGEKKCEMVFLPECFDFI 50 :::::: :::::::::::::::::::::::::::: d1uf3a_ 1 -----MRRTVRYILAT----------SNPMGDLEALEKFVKLAPDTGADAIALIGNLMP- 44 d1emsa2 51 GLNKNEQIDLAMATD----CEYMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLII 106 :::::::::::::::::::: d1uf3a_ 45 ---------------KAAKSRDYAAFFRILSEAHLPTAY--------------------- 68 d1emsa2 107 DSDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEM---------------------- 144 d1uf3a_ 69 --------------------------------------VPGPQDAPIWEYLREAANVELV 90 d1emsa2 145 --------IPPVDTPI--GRLGLSICYDV---------------RFPELSLWNRKRGA-- 177 ::::::: :::::::: ::::::::::: d1uf3a_ 91 HPEMRNVHETFTFWR-GPYLVAGVGG---EIADEGEPEEHEALRYPAWVAEYRLK---AL 143 d1emsa2 178 -------QLLSFPSAFTLNTGLAHW-------------ETLLRARAIENQ-CYVVAAAQT 216 ::::: :::::::::::: ::::: d1uf3a_ 144 WELKDYPKIFLF-------------HTMPYHKGLNEQGSHEVAHLIKTHNPLLVLV---- 186 d1emsa2 217 GAHNPKRQSY--GHSMVVDPWGAV------VAQCSE---RVDMCFAEIDLSYVDTLREMQ 265 :::::: ::::: :::::::: d1uf3a_ 187 ----------AGKGQKHE------MLGASWVVVPG-DLSEGEYSLLD------------- 216 d1emsa2 266 PVFSHR------------ 271 d1uf3a_ 217 ------LRARKLETGNVR 228 TMalign alignment (TM-score: 0.53 Raw score:142.60) d1emsa2 1 -MATGRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQID 59 :::::::::::::: : :::::::::::::::::::::::::: ::: :: d1uf3a_ 1 M-RRTVRYILATSNPM---G--DLEALEKFVKLAPDTGADAIALIGNL-MPK----AA-- 47 d1emsa2 60 LAMATDCEYMEKYRELARKHNIWLSLGGL--HHKDPSDAAHPWNT-HLI-ID-SDGVTRA 114 :::::: ::::::: ::: :::::::: :: :::::: ::: :: :::::: d1uf3a_ 48 KSRDYA-AFFRILS-EAH---LPTAYVPGPQDA------PIWEYLREAANVEL-VHPEMR 95 d1emsa2 115 EYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPI-GRLGLSIC-Y----------- 161 :::: : :::::: :::::::: : d1uf3a_ 96 NVHE--------------------------T-FTFWRGPYLVAGVGGEIADEGEPEEHEA 128 d1emsa2 162 --DVR--FPELSLWNRKRG-AQLLSFPSAF------TLNTGLAHWETLLRARAIENQCYV 210 ::: :::::::::::: :::::::::: ::::: :::::::::::::: d1uf3a_ 129 LRYPAWVAEYRLKALWELKDYPKIFLFHTMPYHKGL----NEQGS-HEVAHLIKTHNPLL 183 d1emsa2 211 VAAAQTGAHNPKRQSYGHSMVVDPWGAVVAQCSE--RVDMCFAEIDLSY--------VDT 260 :::::: :::::::::::: ::::: ::::::::::: : d1uf3a_ 184 VLVAGK----------GQKHEMLGASWV-VVPGDLSEGEYSLLDLRA-RKLETGNVR--- 228 d1emsa2 261 LREMQPVFSHR 271 d1uf3a_ 229 ----------- 229 HHsearch alignment (Probability: 0.94 E-value:0.00) d1emsa2 1 MATGRHFIAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLP 44 :::::::::::: ::::::::::::::::::::::::::: d1uf3a_ 1 MRRTVRYILATS-----NPMGDLEALEKFVKLAPDTGADAIALI 39