Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1jfla2 | Aspartate racemase | Aspartate/glutamate racemase | ATC-like | α/β |
| Hit | d1doza_ | Ferrochelatase | Chelatase | Chelatase-like | α/β |
Query <-- 0.802 --> IntermediateDALI alignment (Z-score: 1.0 Raw score:191.90) query 1 slqLRLALNQ-------------------------------IDST------VGDIAGNAE 23 ::::::: :::: ::::::::: d1jfla2 1 --fKKAGLLAttgtivsgvyekefskygveimtptedeqkdVMRGiyegvkAGNLKLGRE 58 query 24 AILRWTRHSAEQGAHLVAF-PEMAltgypvedlalrssfveasrtalrelAARLaeegfg 82 ::::::::::::::::::: :::: :::: d1jfla2 59 LLLKTAKILEERGAECIIAgCTEV----------------------svvlKQDD-----l 91 query 83 ELPVLvgyldrsesaqpkygqpagaprnaaavlhrgrvaltfakhhlpnygvfdefryfv 142 ::::: d1jfla2 92 KVPLI------------------------------------------------------- 96 query 143 pgdtmpivrlhgvdialaicedlwqdggrvpaarsagaglllsvnaspyerdkddtrlel 202 d1jfla2 97 ------------------------------------------------------------ 97 query 203 vrkraqeagcttaylamiggqdelvfdgdsivvdrdgevvarapqfsegcvvldldlpaa 262 d1jfla2 97 ------------------------------------------------------------ 97 query 263 eaepptgvvddglridrlviseeplpayeaelaggyadrl 302 d1jfla2 97 -----------------------dpmdviaevavkvalek 113 FAST alignment (Normalized score: 1.26 Raw score:232.10) query 1 SLQLRLALNQIDSTVGDIAGNAEAI---------------LRWTRHSAEQGAHLVAFPEM 45 :::::::::::: d1jfla2 1 -------------------------FKKAGLLATTGTIVSGVYEKEFSKYGV-------- 27 query 46 ALTGYPVEDLALRSSFVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPA 105 d1jfla2 28 ------------------------------------------------------------ 28 query 106 GAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDL 165 d1jfla2 28 ------------------------------------------------------------ 28 query 166 WQDG----------------------------------GRVPAARSAGAGLLLSVNASPY 191 :::::::::::::::: d1jfla2 28 ----EIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIA------ 77 query 192 ERDKD--DTRLELVRK-RAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQF 248 :::::: ::::::::::: d1jfla2 78 -----GCTEVSVV---LKQDDLKVPLID-------------------------------- 97 query 249 SEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADRL------ 302 d1jfla2 98 ------------------------------------------------------PMDVIA 103 query 303 ---------- 303 d1jfla2 104 EVAVKVALEK 113 TMalign alignment (TM-score: 0.20 Raw score:60.72) query 1 -SLQLR-LA-LN-QIDSTV-GDIAGN--AEAI--LRWT-RHSAEQGAHLV-AF-----PE 44 : : : :::: : : :: :: :::::: : d1jfla2 1 F----KK-AG-LL--ATTGT-----IVS---GVY--EKE-FS--KYGVEIM-TPTEDE-- 36 query 45 MA-LTG-YPV---EDLALRSSFVEASRTALRELAARLAEEGFGELPVLVG-Y--LDRSES 96 : ::: ::: :: :::::::::::::::::::: : : ::::: : :: d1jfla2 37 -QKDVMRGIYEGVKA-GNLKLGRELLLKTAKILEER-G----A--ECIIAGCTEVS---- 83 query 97 AQPKYGQPAGAPRNAAA--VLHRGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHG 154 ::::: :::::::: d1jfla2 84 ------------VVLKQDD-----LKVPLIDP---------------------------- 98 query 155 VDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTT 214 :::: : : : : :::::: d1jfla2 99 ----MDVI--A------E----------V-------------------A--VKVALE--- 112 query 215 AYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDG 274 : d1jfla2 113 -----------------------K------------------------------------ 113 query 275 LRIDRLVISEEPLPAYEAELAGGYADRL 302 d1jfla2 114 ---------------------------- 114 HHsearch alignment (Probability: 0.06 E-value:0.03) query 16 GDIAGNAEAILRWTRHSAEQGAHLVAF 42 ::::::::::::::::::::::::::: d1jfla2 51 GNLKLGRELLLKTAKILEERGAECIIA 77
Intermediate <-- 0.648 --> HitDALI alignment (Z-score: 4.2 Raw score:279.80) d1jfla2 1 -fKKAGLLA-------------------------------------------------TT 10 ::::::: :: d1doza_ 1 srKKMGLLVmaygtpykeedieryythirrgrkpepemlqdlkdryeaiggisplaqiTE 60 d1jfla2 11 GTIVsGVYEKEF-sKYGVEIMTPtedeqkdvmrGIYEgvkagnlklgreLLLKTAKILEE 69 :::: ::::::: ::::::::: :::: ::::::::::: d1doza_ 61 QQAH-NLEQHLNeiQDEITFKAY--------igLKHI----------epFIEDAVAEMHK 101 d1jfla2 70 RGAECIIAGCT----------eVSVVLkQDDL----KVPLI------------------- 96 ::::::::::: ::::: :::: ::::: d1doza_ 102 DGITEAVSIVLaphfstfsvqsYNKRA-KEEAeklgGLTITsveswydepkfvtywvdrv 160 d1jfla2 97 ------------------------------------------------------------ 97 d1doza_ 161 ketyasmpederenamlivsahslpekikefgdpypdqlhesakliaegagvseyavgwq 220 d1jfla2 97 ------------------------------------------------------------ 97 d1doza_ 221 segntpdpwlgpdvqdltrdlfeqkgyqafvyvpvgfvadhlevlydndyeckvvtddig 280 d1jfla2 97 ------------dpmdviaevavkvalek 113 d1doza_ 281 asyyrpempnakpefidalatvvlkklgr 309 FAST alignment (Normalized score: 2.39 Raw score:445.80) d1jfla2 1 -FKKAGLLA-----------------------------------------------TTGT 12 ::::::: :::: d1doza_ 1 SRKKMGLL-VMAYGTPYKEEDIERYYTHIRRGRKPEPEMLQDLKDRYEAIGGISPLAQIT 59 d1jfla2 13 IVSGVYEKEFSK-----YGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRE--------- 58 : ::::::::: :::::: d1doza_ 60 E--QQAHNLEQHLNEIQDEITFK----------------------------AYIGLKHIE 89 d1jfla2 59 -LLLKTAKILEERGAECIIAG-----------CTEVSVVLKQDD--------LKVPLIDP 98 ::::::::::::::::::: ::::::: ::::::: d1doza_ 90 PFIEDAVAEMHKDGITEAVS-IVLAPHFSTFSVQSYNKR-----AKEEAEKLGGLTITS- 142 d1jfla2 99 MDVI-------------------------------------------------------- 102 d1doza_ 143 ----VESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVSAHSLPEKIKEFGDPYPDQ 198 d1jfla2 103 -AEVAVKVALEK------------------------------------------------ 113 ::::::::: d1doza_ 199 LHESAKLIAE--GAGVSEYAVGWQSEGNTPDPWLGPDVQDLTRDLFEQKGYQAFVYVPVG 256 d1jfla2 114 ----------------------------------------------------- 114 d1doza_ 257 FVADHLEVLYDNDYECKVVTDDIGASYYRPEMPNAKPEFIDALATVVLKKLGR 309 TMalign alignment (TM-score: 0.48 Raw score:54.62) d1jfla2 1 ------------------------------------------------------------ 1 d1doza_ 1 SRKKMGLLVMAYGTPYKEEDIERYYTHIRRGRKPEPEMLQDLKDRYEAIGGISPLAQITE 60 d1jfla2 1 ------------------------------------------------------------ 1 d1doza_ 61 QQAHNLEQHLNEIQDEITFKAYIGLKHIEPFIEDAVAEMHKDGITEAVSIVLAPHFSTFS 120 d1jfla2 1 -------------------------------------------F-------K---KAGLL 7 : : ::::: d1doza_ 121 VQSYNKRAKEEAEKLGGLTITSVESWYDEPKFVTYWVDRVKETYASMPEDERENAMLIVS 180 d1jfla2 8 A-T-----------TG--TIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAG-- 51 : : :: :: ::::::::::::::::: : : ::: ::: d1doza_ 181 AHSLPEKIKEFGDPYPDQLH--ESAKLIAEGAGVSEYAV----G--W--QSE---GNTPD 227 d1jfla2 52 -----NLKLGRELLLKTAKILEE-R-GAECIIAG-C------TE--VSVVLKQDDL---- 91 ::::::::::: : :::::::: : :: :::::::::: d1doza_ 228 PWLGP-------DVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDDIG 280 d1jfla2 92 KVPLIDPMDVIAEVAVKVA---------------LEK 113 :::::: :::: :: :: d1doza_ 281 ASYYRP--EMPN-AK--PEFIDALATVVLKKLGR--- 309 HHsearch alignment (Probability: 0.01 E-value:0.36) d1jfla2 60 LLKTAKILEERGAECII 76 ::::::::::::::::: d1doza_ 92 IEDAVAEMHKDGITEAV 108