Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1jfla2 | Aspartate racemase | Aspartate/glutamate racemase | ATC-like | α/β |
| Hit | d1ru8a_ | Putative N-type ATP pyrophosphatase PF0828 | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
Query <-- 0.802 --> IntermediateDALI alignment (Z-score: 1.0 Raw score:191.90) query 1 slqLRLALNQ-------------------------------IDST------VGDIAGNAE 23 ::::::: :::: ::::::::: d1jfla2 1 --fKKAGLLAttgtivsgvyekefskygveimtptedeqkdVMRGiyegvkAGNLKLGRE 58 query 24 AILRWTRHSAEQGAHLVAF-PEMAltgypvedlalrssfveasrtalrelAARLaeegfg 82 ::::::::::::::::::: :::: :::: d1jfla2 59 LLLKTAKILEERGAECIIAgCTEV----------------------svvlKQDD-----l 91 query 83 ELPVLvgyldrsesaqpkygqpagaprnaaavlhrgrvaltfakhhlpnygvfdefryfv 142 ::::: d1jfla2 92 KVPLI------------------------------------------------------- 96 query 143 pgdtmpivrlhgvdialaicedlwqdggrvpaarsagaglllsvnaspyerdkddtrlel 202 d1jfla2 97 ------------------------------------------------------------ 97 query 203 vrkraqeagcttaylamiggqdelvfdgdsivvdrdgevvarapqfsegcvvldldlpaa 262 d1jfla2 97 ------------------------------------------------------------ 97 query 263 eaepptgvvddglridrlviseeplpayeaelaggyadrl 302 d1jfla2 97 -----------------------dpmdviaevavkvalek 113 FAST alignment (Normalized score: 1.26 Raw score:232.10) query 1 SLQLRLALNQIDSTVGDIAGNAEAI---------------LRWTRHSAEQGAHLVAFPEM 45 :::::::::::: d1jfla2 1 -------------------------FKKAGLLATTGTIVSGVYEKEFSKYGV-------- 27 query 46 ALTGYPVEDLALRSSFVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPA 105 d1jfla2 28 ------------------------------------------------------------ 28 query 106 GAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDL 165 d1jfla2 28 ------------------------------------------------------------ 28 query 166 WQDG----------------------------------GRVPAARSAGAGLLLSVNASPY 191 :::::::::::::::: d1jfla2 28 ----EIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIA------ 77 query 192 ERDKD--DTRLELVRK-RAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQF 248 :::::: ::::::::::: d1jfla2 78 -----GCTEVSVV---LKQDDLKVPLID-------------------------------- 97 query 249 SEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADRL------ 302 d1jfla2 98 ------------------------------------------------------PMDVIA 103 query 303 ---------- 303 d1jfla2 104 EVAVKVALEK 113 TMalign alignment (TM-score: 0.20 Raw score:60.72) query 1 -SLQLR-LA-LN-QIDSTV-GDIAGN--AEAI--LRWT-RHSAEQGAHLV-AF-----PE 44 : : : :::: : : :: :: :::::: : d1jfla2 1 F----KK-AG-LL--ATTGT-----IVS---GVY--EKE-FS--KYGVEIM-TPTEDE-- 36 query 45 MA-LTG-YPV---EDLALRSSFVEASRTALRELAARLAEEGFGELPVLVG-Y--LDRSES 96 : ::: ::: :: :::::::::::::::::::: : : ::::: : :: d1jfla2 37 -QKDVMRGIYEGVKA-GNLKLGRELLLKTAKILEER-G----A--ECIIAGCTEVS---- 83 query 97 AQPKYGQPAGAPRNAAA--VLHRGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHG 154 ::::: :::::::: d1jfla2 84 ------------VVLKQDD-----LKVPLIDP---------------------------- 98 query 155 VDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTT 214 :::: : : : : :::::: d1jfla2 99 ----MDVI--A------E----------V-------------------A--VKVALE--- 112 query 215 AYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDG 274 : d1jfla2 113 -----------------------K------------------------------------ 113 query 275 LRIDRLVISEEPLPAYEAELAGGYADRL 302 d1jfla2 114 ---------------------------- 114 HHsearch alignment (Probability: 0.06 E-value:0.03) query 16 GDIAGNAEAILRWTRHSAEQGAHLVAF 42 ::::::::::::::::::::::::::: d1jfla2 51 GNLKLGRELLLKTAKILEERGAECIIA 77
Intermediate <-- 1.061 --> HitDALI alignment (Z-score: 3.9 Raw score:280.00) d1jfla2 1 -FKKAGLLATTGTivsGVYEKEFSKYGVEI-MTPT------------------------- 33 :::::::::::: :::::::::::::: :::: d1ru8a_ 1 gLADVAVLYSGGK-dsNYALYWAIKNRFSVkFLVTmvseneesymytinanltdlqaral 59 d1jfla2 34 -edeQKDVmrgiyegvkAGNLKLGRELLLKTAKILeerGAECIIAG-ctevSVVLKQ--D 89 :::: :::::::::::::::::: :::::::: :::::: : d1ru8a_ 60 giplVKGF--------tQGEKEKEVEDLKRVLSGL---KIQGIVAGaskyqRKRIEKvaK 108 d1jfla2 90 DLKVPLIDPMDV------------------------------------------------ 101 :::::::::::: d1ru8a_ 109 ELGLEVYTPAWGrdakeymrellnlgfkimvvgvsaygldeswlgrildesaleelitln 168 d1jfla2 102 -----------------------------------------------iaevavkvalek 113 d1ru8a_ 169 ekykvhvageggefetfvldmplfkykivvdkakkvwepctssgkliieeahleskleh 227 FAST alignment (Normalized score: 2.35 Raw score:375.70) d1jfla2 1 F-----------------------------KKAGLLATTGTIV--------------SGV 17 ::::: ::: d1ru8a_ 1 -GLADVAVLYSGGKDSNYALYWAIKNRFSVKFLVT--------MVSENEESYMYTINANL 51 d1jfla2 18 YEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKL----GRELLLKTAKILEE-RGA 72 ::::::::::::::: :::::::::::::: ::: d1ru8a_ 52 TDLQARALGIPLVKG-----------------------FTQGEKEKEVEDLKRVLSGLKI 88 d1jfla2 73 ECIIAG-CTEVSVVLKQ-----DDLKVPLIDPMD---------VIAEVAVKVALEK---- 113 :::::: ::::::: ::::::::: ::::::: d1ru8a_ 89 QGIVAGASKYQRKR---IEKVAKELGLEVYT---PAWGRDAKEYMRELLN------LGFK 136 d1jfla2 114 ------------------------------------------------------------ 114 d1ru8a_ 137 IMVVGVSAYGLDESWLGRILDESALEELITLNEKYKVHVAGEGGEFETFVLDMPLFKYKI 196 d1jfla2 114 ------------------------------- 114 d1ru8a_ 197 VVDKAKKVWEPCTSSGKLIIEEAHLESKLEH 227 TMalign alignment (TM-score: 0.51 Raw score:57.81) d1jfla2 1 -FKKAGLLATTGT-IVSGVYEKEFSKYGVEI-MTPTEDEQKD-VMR-------------- 42 :::::::::::: : :::::::::::::: ::: :::: :: d1ru8a_ 1 GLADVAVLYSGGKDS--NYALYWAIKNRFSVKFLV---TMVSE-NEESYMYTINANLTDL 54 d1jfla2 43 ---------------GIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCT-EVSVVL 86 ::::::::::::::::::::::::::: :::::: d1ru8a_ 55 QARALGIPLVKGFTQ-----------GEKEKEVEDLKRVLSGLKIQGIVAGASKYQRKRI 103 d1jfla2 87 -K-QDDLKVPLIDP-MDVIA---------------------------------------- 103 : ::::::::::: :: :: d1ru8a_ 104 EKVAKELGLEVYTPAWG-RDAKEYMRELLNLGFKIMVVGVSAYGLDESWLGRILDESALE 162 d1jfla2 104 ------------------------------------------------------------ 104 d1ru8a_ 163 ELITLNEKYKVHVAGEGGEFETFVLDMPLFKYKIVVDKAKKVWEPCTSSGKLIIEEAHLE 222 d1jfla2 104 -----EVAVKVALEK 113 d1ru8a_ 223 SKLEH---------- 227 HHsearch alignment (Probability: 0.04 E-value:0.07) d1jfla2 5 GLLATTGTIVSGVYEKEFSKYGVEIMTP 32 :::::::::::::::::::::::::::: d1ru8a_ 90 GIVAGASKYQRKRIEKVAKELGLEVYTP 117