Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1jfla2 | Aspartate racemase | Aspartate/glutamate racemase | ATC-like | α/β |
| Hit | d1di6a_ | MogA | Molybdenum cofactor biosynthesis proteins | Molybdenum cofactor biosynthesis proteins | α/β |
Query <-- 0.802 --> IntermediateDALI alignment (Z-score: 1.0 Raw score:191.90) query 1 slqLRLALNQ-------------------------------IDST------VGDIAGNAE 23 ::::::: :::: ::::::::: d1jfla2 1 --fKKAGLLAttgtivsgvyekefskygveimtptedeqkdVMRGiyegvkAGNLKLGRE 58 query 24 AILRWTRHSAEQGAHLVAF-PEMAltgypvedlalrssfveasrtalrelAARLaeegfg 82 ::::::::::::::::::: :::: :::: d1jfla2 59 LLLKTAKILEERGAECIIAgCTEV----------------------svvlKQDD-----l 91 query 83 ELPVLvgyldrsesaqpkygqpagaprnaaavlhrgrvaltfakhhlpnygvfdefryfv 142 ::::: d1jfla2 92 KVPLI------------------------------------------------------- 96 query 143 pgdtmpivrlhgvdialaicedlwqdggrvpaarsagaglllsvnaspyerdkddtrlel 202 d1jfla2 97 ------------------------------------------------------------ 97 query 203 vrkraqeagcttaylamiggqdelvfdgdsivvdrdgevvarapqfsegcvvldldlpaa 262 d1jfla2 97 ------------------------------------------------------------ 97 query 263 eaepptgvvddglridrlviseeplpayeaelaggyadrl 302 d1jfla2 97 -----------------------dpmdviaevavkvalek 113 FAST alignment (Normalized score: 1.26 Raw score:232.10) query 1 SLQLRLALNQIDSTVGDIAGNAEAI---------------LRWTRHSAEQGAHLVAFPEM 45 :::::::::::: d1jfla2 1 -------------------------FKKAGLLATTGTIVSGVYEKEFSKYGV-------- 27 query 46 ALTGYPVEDLALRSSFVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPA 105 d1jfla2 28 ------------------------------------------------------------ 28 query 106 GAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDL 165 d1jfla2 28 ------------------------------------------------------------ 28 query 166 WQDG----------------------------------GRVPAARSAGAGLLLSVNASPY 191 :::::::::::::::: d1jfla2 28 ----EIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIA------ 77 query 192 ERDKD--DTRLELVRK-RAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQF 248 :::::: ::::::::::: d1jfla2 78 -----GCTEVSVV---LKQDDLKVPLID-------------------------------- 97 query 249 SEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADRL------ 302 d1jfla2 98 ------------------------------------------------------PMDVIA 103 query 303 ---------- 303 d1jfla2 104 EVAVKVALEK 113 TMalign alignment (TM-score: 0.20 Raw score:60.72) query 1 -SLQLR-LA-LN-QIDSTV-GDIAGN--AEAI--LRWT-RHSAEQGAHLV-AF-----PE 44 : : : :::: : : :: :: :::::: : d1jfla2 1 F----KK-AG-LL--ATTGT-----IVS---GVY--EKE-FS--KYGVEIM-TPTEDE-- 36 query 45 MA-LTG-YPV---EDLALRSSFVEASRTALRELAARLAEEGFGELPVLVG-Y--LDRSES 96 : ::: ::: :: :::::::::::::::::::: : : ::::: : :: d1jfla2 37 -QKDVMRGIYEGVKA-GNLKLGRELLLKTAKILEER-G----A--ECIIAGCTEVS---- 83 query 97 AQPKYGQPAGAPRNAAA--VLHRGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHG 154 ::::: :::::::: d1jfla2 84 ------------VVLKQDD-----LKVPLIDP---------------------------- 98 query 155 VDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTT 214 :::: : : : : :::::: d1jfla2 99 ----MDVI--A------E----------V-------------------A--VKVALE--- 112 query 215 AYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDG 274 : d1jfla2 113 -----------------------K------------------------------------ 113 query 275 LRIDRLVISEEPLPAYEAELAGGYADRL 302 d1jfla2 114 ---------------------------- 114 HHsearch alignment (Probability: 0.06 E-value:0.03) query 16 GDIAGNAEAILRWTRHSAEQGAHLVAF 42 ::::::::::::::::::::::::::: d1jfla2 51 GNLKLGRELLLKTAKILEERGAECIIA 77
Intermediate <-- 1.287 --> HitDALI alignment (Z-score: 4.5 Raw score:360.90) d1jfla2 1 -fKKAGLLA---tTGTIvsGVYEKEFSKYG---VEIMTPtedeqkdVMRGiyegvkagnl 53 ::::::: :::: ::::::::::: :::::: :::: d1di6a_ 1 atLRIGLVSisdrDKGI--PALEEWLTSALttpFELETR------lIPDE---------- 42 d1jfla2 54 klgRELLLKTAKILEE-RGAECIIAGCTE-------VSVVLKQDD--------------- 90 ::::::::::::: :::::::::::: ::::::::: d1di6a_ 43 ---QAIIEQTLCELVDeMSCHLVLTTGGTgparrdvTPDATLAVAdrempgfgeqmrqis 99 d1jfla2 91 -----------------lKVPLIDPM------dvIAEVavKVAL---------------- 111 :::::::: :::: :::: d1di6a_ 100 lhfvptailsrqvgvirkQALILNLPgqpksikeTLEG--VKDAegnvvvhgifasvpyc 157 d1jfla2 112 ------------------------ek 113 d1di6a_ 158 iqllegpyvetapevvaafrpksarr 183 FAST alignment (Normalized score: 4.01 Raw score:577.20) d1jfla2 1 -FKKAGLLA-----TTGTIVSGVYEKEFSK---YGVEIMTPTEDEQKDVMRGIYEGVKAG 51 :::::: ::::: ::::::::: ::::::: d1di6a_ 1 ATLRIGL--VSISDRDKGI--PALEEWLTSALTTPFELET-------------------- 36 d1jfla2 52 NLKL-----GRELLLKTAKILE-ERGAECIIAGC--------TEVSVVLKQDDL------ 91 ::::::::::::: :::::::::: :::::: d1di6a_ 37 ----RLIPDEQAIIEQTLCELVDEMSCHLVLTT-GGTGPARRDVTPDA------TLAVAD 85 d1jfla2 92 --------------------------------KVPLIDPMDVIAEVAVKVALEK------ 113 :::::: d1di6a_ 86 REMPGFGEQMRQISLHFVPTAILSRQVGVIRKQALILN----------------LPGQPK 129 d1jfla2 114 ------------------------------------------------------ 114 d1di6a_ 130 SIKETLEGVKDAEGNVVVHGIFASVPYCIQLLEGPYVETAPEVVAAFRPKSARR 183 TMalign alignment (TM-score: 0.59 Raw score:66.33) d1jfla2 1 -FKKAGLLATT--G-TIVSGVYEKEFSK-YG--VEIMTPTEDEQKDVMRGIYEGVKAGNL 53 :::::::::: : :: ::::::::: :: :::::: : :: : : d1di6a_ 1 ATLRIGLVSISDRDKGI--PALEEWLTSALTTPFELETR----L--IP--D--E------ 42 d1jfla2 54 KLGRELLLKTAKILE-ERGAECIIAGC-T------EVSVVLK--QDD------------- 90 : ::::::::::: ::::::::::: : ::::::: ::: d1di6a_ 43 --Q-AIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQIS 99 d1jfla2 91 ----------------LK-VPLIDPM-----D-VIAEVA------VKVA----------- 110 :: ::::::: : :::::: ::: d1di6a_ 100 LHFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKDAEGN-VVVHGIFASVPYCI 158 d1jfla2 111 -------------------------LEK 113 d1di6a_ 159 QLLEGPYVETAPEVVAAFRPKSARR--- 183 HHsearch alignment (Probability: 0.08 E-value:0.04) d1jfla2 3 KAGLLATTGTIVSG-VYEKEFSKYGVE 28 :::::::::::::: :::::::::::: d1di6a_ 4 RIGLVSISDRDKGIPALEEWLTSALTT 30