Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1j93a_ | Uroporphyrinogen decarboxylase, UROD | UROD/MetE-like | TIM beta/alpha-barrel | α/β |
| Hit | d1gvea_ | Aflatoxin aldehyde reductase (akr7a1) | NAD(P)-linked oxidoreductase | TIM beta/alpha-barrel | α/β |
Query <-- 0.875 --> IntermediateDALI alignment (Z-score: 2.8 Raw score:517.50) query 1 ------------------------------------------------------------ 1 d1j93a_ 1 tqpllldavrgkeverppvwlmrqagrymksyqllcekyplfrdrsenvdlvveislqpw 60 query 1 ------------------------------------------------------------ 1 d1j93a_ 61 kvfrpdgvilfsdiltplsgmnipfdiikgkgpvifdplrtaadvekvrefipeksvpyv 120 query 1 ------------sLQLRLALN-qidSTVG---------------------------DIAG 20 :::::::: :::: :::: d1j93a_ 121 gealtilrkevnnQAAVLGFVgapfTLASyvveggssknftkikrlafaepkvlhaLLQK 180 query 21 NAEAILRWTRHSAEQGAHLVAFPEMaltgypvedLALRSSFVEASRTALRELAARLAEEg 80 ::::::::::::::::::::::::: ::::::::::::::::::::::::: d1j93a_ 181 FATSMAKYIRYQADSGAQAVQIFDS------watELSPVDFEEFSLPYLKQIVDSVKLT- 233 query 81 FGELPVLVGY---lDRSEsaqpkygqpagaprnaaavlhrgRVALTFAKHhlpnygvfde 137 :::::::::: :::: ::::::::: d1j93a_ 234 HPNLPLILYAsgsgGLLE------------------rlpltGVDVVSLDW---------- 265 query 138 fryfvPGDTMpivrlhgvdialaiceDLWQD----ggrvPAARSAGaglllsvnaspyer 193 ::::: ::::: ::::::: d1j93a_ 266 -----TVDMAdgrrrlgpnvaiqgnvDPGVLfgskefitNRINDTV---kkagkgkhiln 317 query 194 dkddtRLELvRKRAQEAGcttaylamiggqdelvfdgdsivvdrdgevvarapqfsegcv 253 :::: :::::::: d1j93a_ 318 lghgiKVGTpEENFAHFF------------------------------------------ 335 query 254 vldldlpaaEAEPptgvvddglridrlviseeplpayeaelaggyadrl 302 :::: d1j93a_ 336 -----eiakGLRY------------------------------------ 343 FAST alignment (Normalized score: 2.91 Raw score:937.50) query 1 S----------------------------------------------------------- 1 d1j93a_ 1 -TQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQP 59 query 2 ------------------------------------------------------------ 2 d1j93a_ 60 WKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPY 119 query 2 --------------LQLRLALNQIDSTV-------------------------------- 15 :::::::: d1j93a_ 120 VGEALTILRKEVNNQAAVLGFV------GAPFTLASYVVEGGSSKNFTKIKRLAFAEPKV 173 query 16 --GDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLAL--------RSSFV-EA 64 ::::::::::::::::::::::::::: ::::: :: d1j93a_ 174 LHALLQKFATSMAKYIRYQADSGAQAVQI---------------FDSWATELSPVDFEEF 218 query 65 SRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRG------ 118 :::::::::::::: :::::::::: d1j93a_ 219 SLPYLKQIVDSVKL-THPNLPLILY-----------------------------ASGSGG 248 query 119 --------RVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVD-------------- 156 ::::::: d1j93a_ 249 LLERLPLTGVDVVSL-------------------------------DWTVDMADGRRRLG 277 query 157 ---IALAICEDLWQDG------------------GRVPAARSAGA---GLLLSV---NAS 189 ::::: ::::: ::::: ::: d1j93a_ 278 PNVAIQGN--------VDPGVLFGSKEFITNRINDTVKK------AGKGKHIL-NLGHGI 322 query 190 PYERDKD-----DTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVAR 244 : ::::::::::: d1j93a_ 323 K------VGTPEENFAHFFEIAK------------------------------------- 339 query 245 APQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADRL-- 302 d1j93a_ 340 ----------------------------------------------------------GL 341 query 303 -- 303 d1j93a_ 342 RY 343 TMalign alignment (TM-score: 0.44 Raw score:131.70) query 1 SLQLRL------------------------------------------------------ 6 ::::: d1j93a_ 1 -TQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQP 59 query 7 ------ALNQIDSTVGDIAGN--------------------------------A---E-A 24 ::::::::::::::: : : : d1j93a_ 60 WKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPY 119 query 25 ILRWTRHSAE--QGAHLVAFPEMAL-TG-YP-----VE--D-LAL---------RSSFVE 63 :::::::::: ::::::::::::: :: :: :: : ::: :::::: d1j93a_ 120 VGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQ 179 query 64 ASRTALRELAARLAEEGFGELPVLVGYLDRS--ESAQPKYGQPAGAPR-NAA-AV--LHR 117 :::::::::::::::: : ::::::::::: : :::::::::: ::: :: ::: d1j93a_ 180 KFATSMAKYIRYQADS-G--AQAVQIFDSWATE---L-SPVDFEEFSLPYLKQIVDSVKL 232 query 118 GRV-ALTFA-KHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAA 175 ::: ::::: :::::: : :::::::::: ::::::::::::::::: d1j93a_ 233 THPNLPLILYASGSGG------L--LERLPLTGVD--------VVSLDWTVDMADGRRRL 276 query 176 RSAGAGLLLSVNASPYERDKDD--TRLELVRKRAQEAGCT-TAYLA-MIGGQDELVFD-G 230 ::: : ::::::: ::::::: :::::::::::::::: ::::: ::: :::: : d1j93a_ 277 GPN-V--AIQGNVD-PGVLFGSKEFITNRINDTVKKAGKGKHILNLGHGI----KVGTPE 328 query 231 --DSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLP 288 ::::: ::::: ::: d1j93a_ 329 ENFAHFF---EIAKG-------------LRY----------------------------- 343 query 289 AYEAELAGGYADRL 302 d1j93a_ 344 -------------- 344 HHsearch alignment (Probability: 0.14 E-value:0.02) query 18 IAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLA 77 ::::::::::::::::::::::::::::::::::::: ::::::::::::::::: d1j93a_ 178 LQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVD------FEEFSLPYLKQIVDSVK 231 query 78 EEGFGELPVLV 88 :::: :::::: d1j93a_ 232 LTHP-NLPLIL 241
Intermediate <-- 0.880 --> HitDALI alignment (Z-score: 8.5 Raw score:1082.60) d1j93a_ 1 tqpllldavrgkevERPPVWLMRQAG-RYMKSYqllcekyplfrdrsenvdlvveisLQP 59 :::::::::::: :::::: ::: d1gvea_ 1 --------------ARPATVLGAMEMgRRMDVT----------------------ssSRS 24 d1j93a_ 60 WKVFR---PDGVIL---FSDIltplsgmnipfdiikgkgpvifdplrtaadvekvrefip 113 ::::: :::::: :::: d1gvea_ 25 VRAFLqrgHTEIDTafvYANG--------------------------------------- 45 d1j93a_ 114 eksvpyvgeALTIlrKEVN-----NQAAVLGFVGapfTLASYvveggssknftkikrlaf 168 :::: :::: :::::::::: ::::: d1gvea_ 46 -----qsetILGD--LGLGlgrsgCKVKIATKAA---PMFGK------------------ 77 d1j93a_ 169 aepkvlhallqkFATSMAKYIRYQADS----gAQAVQIFDSWAtelspvdfeEFSLPYLK 224 ::::::::::::::: ::::::::::: :::::::: d1gvea_ 78 ----------tlKPADVRFQLETSLKRlqcprVDLFYLHFPDH---------GTPIEETL 118 d1j93a_ 225 QIVDSVKLTHPNLPLILYAsgsggLLERLPLT----------GVDVVSLDW---TVDMAD 271 ::::::::::::::::::: :::::::: ::::::::: :::::: d1gvea_ 119 QACHQLHQEGKFVELGLSN----yVSWEVAEIctlckkngwiMPTVYQGMYnaiTRQVET 174 d1j93a_ 272 -GRRRLGP-NVAIQGNV--DPGVLFG---------------------------------- 293 ::::::: :::::::: ::::::: d1gvea_ 175 eLFPCLRHfGLRFYAFNplAGGLLTGrykyqdkdgknpesrffgnpfsqlymdrywkeeh 234 d1j93a_ 294 ---------------------SKEFITNRINDtvKKAG-KGKHILNlghGIKVgTPEENF 331 ::::::::::: :::: ::::::: :::: :::::: d1gvea_ 235 fngialvekalkttygptapsMISAAVRWMYH-hSQLKgTQGDAVI--lGMSSlEQLEQN 291 d1j93a_ 332 AHFFEI---------------------akglry 343 :::::: d1gvea_ 292 LALVEEgplepavvdafdqawnlvahecpnyfr 324 FAST alignment (Normalized score: 4.05 Raw score:1351.00) d1j93a_ 1 TQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRS--------ENVDLV 52 ::::::: :::::: d1gvea_ 1 --------------ARPATVL-------------------------GAMEMGRRMDVTSS 21 d1j93a_ 53 VEISLQPWKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFI 112 :::::::: ::::::: d1gvea_ 22 SRSVRAFL-QRGHTEI-------------------------------------------- 36 d1j93a_ 113 PEKSVPY-------VGEALTILRKEVN----------NQAAVLGFVGAPFTLASYVVEGG 155 ::::::::: :::::::: d1gvea_ 37 -------DTAFVYANGQSETILG----DLGLGLGRSGCKVKIATK--------------- 70 d1j93a_ 156 SSKNFTKIKRLAFAEPKV---------LHALLQKFATSMAKYIRYQADS----GAQAVQI 202 ::::::::::::::: ::::::: d1gvea_ 71 ------------------AAPMFGKTLKPADVRFQLETSLKR-------LQCPRVDLFYL 105 d1j93a_ 203 FDSW---ATELSPVDFE-EFSLPYLKQIVDSVKLTHPN----LPLILYASG---SGGLLE 251 ::::: :::::::::::: ::::: :::::: d1gvea_ 106 ----HFPDHGTP-----IEETLQACHQLHQ--------EGKFVELGL----SNYVSWEVA 144 d1j93a_ 252 RLPLT---------GVDVVSLDWTVD---------MADGRRRLG---PNVAIQGNV---- 286 ::: ::::::: ::::::: ::::::: d1gvea_ 145 EIC--TLCKKNGWIMPTVYQG-----MYNAITRQVETELFPC--LRHFGLRFYA--FNPL 193 d1j93a_ 287 -DPGVLFGSK-------------------------------------------------- 295 :::: d1gvea_ 194 AGGLL-----TGRYKYQDKDGKNPESRFFGNPFSQLYMDRYWKEEHFNGIALVEKALKTT 248 d1j93a_ 296 ------EFITNRINDTVKKAG-------KGKHILNLGHGIKVG----TPEENFAHFFEIA 338 ::::::::::: :::::: ::::::::::::: d1gvea_ 249 YGPTAPSMISAAVRWMY----HHSQLKGTQGDAV---------ILGMSSLEQLEQNLALV 295 d1j93a_ 339 KGLRY---------------------------- 343 : d1gvea_ 296 E----EGPLEPAVVDAFDQAWNLVAHECPNYFR 324 TMalign alignment (TM-score: 0.45 Raw score:153.16) d1j93a_ 1 TQPLLLDAVRGKEVERPPVWLMRQA-GRYMKSYQL-------------------LCEKYP 40 ::::::::::: ::::::::: d1gvea_ 1 --------------ARPATVLGAMEMGRRMDVTSSSRSVRAFLQRGHTEIDTAF------ 40 d1j93a_ 41 LFRDRSENVDLVVEISLQPWK------VFRPDGVILFSDILTPLSGMNIPFDIIKGKGPV 94 ::::: ::::::::::: :::::::::::::::::: d1gvea_ 41 -VYANG----QSETILGDLGLGLGRSG--CKVKIATKAAPMFGKTLK------------- 80 d1j93a_ 95 IFDPLRTAADVEKVREFIPEKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEG 154 ::::::::::::::::::: ::::::::: :: d1gvea_ 81 ----------------PADVRFQLETSLKRLQCPR------VDLFYLHFP--DH------ 110 d1j93a_ 155 GSSKNFTKIKRLAFAEPKVLHALLQKFATSMAKYIRYQAD-SGAQAVQIFDSWATELSPV 213 : ::::::::::::::: :::::::::: : d1gvea_ 111 ----------------------G--TPIEETLQACHQLHQEGKFVELGLSN--Y------ 138 d1j93a_ 214 DFEEFSLPYLKQIVDSVK--LTHPNLPLILYAS--GSGGLLERL-PLT--GVDVVSLDWT 266 ::::::::::::: :::: :::::::: ::::::::: ::: ::::::::: d1gvea_ 139 -----VSWEVAEICTLCKKNGWIM-PTVYQGMYNAITRQVETELFPCLRHFGLRFYAFN- 191 d1j93a_ 267 VDMADGRRRLGPNVAIQGNVDPG-VLFG-------------------------------- 293 ::::: :::: d1gvea_ 192 ------------------PLAGGLLTGRYKYQDKDGKNPESRFFGNPFSQLYMDRYWKEE 233 d1j93a_ 294 ------------------SKEF-ITNRINDTVKK--AGKGK-HILNLGHGIKVGTPEENF 331 :::: ::::::::::: ::::: ::::: :: :::::: d1gvea_ 234 HFNGIALVEKALKTTYGPTAPSMISAAVRWMYHHSQLKGTQGDAVIL--GM---SSLEQL 288 d1j93a_ 332 AHFFEIAKGLRY------------------------- 343 ::::::: :::: d1gvea_ 289 EQNLALV-EEGPLEPAVVDAFDQAWNLVAHECPNYFR 324 HHsearch alignment (Probability: 0.13 E-value:0.06) d1j93a_ 108 VREFIPEKSVPYVGEALTILRKEVNNQAAVLGFVG-APFTLAS 149 ::::::::::::::::::::::: :::::::::: ::::::: d1gvea_ 105 LHFPDHGTPIEETLQACHQLHQE--GKFVELGLSNYVSWEVAE 145