Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1j93a_ | Uroporphyrinogen decarboxylase, UROD | UROD/MetE-like | TIM beta/alpha-barrel | α/β |
| Hit | d1hkka1 | Chitotriosidase | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
Query <-- 0.875 --> IntermediateDALI alignment (Z-score: 2.8 Raw score:517.50) query 1 ------------------------------------------------------------ 1 d1j93a_ 1 tqpllldavrgkeverppvwlmrqagrymksyqllcekyplfrdrsenvdlvveislqpw 60 query 1 ------------------------------------------------------------ 1 d1j93a_ 61 kvfrpdgvilfsdiltplsgmnipfdiikgkgpvifdplrtaadvekvrefipeksvpyv 120 query 1 ------------sLQLRLALN-qidSTVG---------------------------DIAG 20 :::::::: :::: :::: d1j93a_ 121 gealtilrkevnnQAAVLGFVgapfTLASyvveggssknftkikrlafaepkvlhaLLQK 180 query 21 NAEAILRWTRHSAEQGAHLVAFPEMaltgypvedLALRSSFVEASRTALRELAARLAEEg 80 ::::::::::::::::::::::::: ::::::::::::::::::::::::: d1j93a_ 181 FATSMAKYIRYQADSGAQAVQIFDS------watELSPVDFEEFSLPYLKQIVDSVKLT- 233 query 81 FGELPVLVGY---lDRSEsaqpkygqpagaprnaaavlhrgRVALTFAKHhlpnygvfde 137 :::::::::: :::: ::::::::: d1j93a_ 234 HPNLPLILYAsgsgGLLE------------------rlpltGVDVVSLDW---------- 265 query 138 fryfvPGDTMpivrlhgvdialaiceDLWQD----ggrvPAARSAGaglllsvnaspyer 193 ::::: ::::: ::::::: d1j93a_ 266 -----TVDMAdgrrrlgpnvaiqgnvDPGVLfgskefitNRINDTV---kkagkgkhiln 317 query 194 dkddtRLELvRKRAQEAGcttaylamiggqdelvfdgdsivvdrdgevvarapqfsegcv 253 :::: :::::::: d1j93a_ 318 lghgiKVGTpEENFAHFF------------------------------------------ 335 query 254 vldldlpaaEAEPptgvvddglridrlviseeplpayeaelaggyadrl 302 :::: d1j93a_ 336 -----eiakGLRY------------------------------------ 343 FAST alignment (Normalized score: 2.91 Raw score:937.50) query 1 S----------------------------------------------------------- 1 d1j93a_ 1 -TQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQP 59 query 2 ------------------------------------------------------------ 2 d1j93a_ 60 WKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPY 119 query 2 --------------LQLRLALNQIDSTV-------------------------------- 15 :::::::: d1j93a_ 120 VGEALTILRKEVNNQAAVLGFV------GAPFTLASYVVEGGSSKNFTKIKRLAFAEPKV 173 query 16 --GDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLAL--------RSSFV-EA 64 ::::::::::::::::::::::::::: ::::: :: d1j93a_ 174 LHALLQKFATSMAKYIRYQADSGAQAVQI---------------FDSWATELSPVDFEEF 218 query 65 SRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRG------ 118 :::::::::::::: :::::::::: d1j93a_ 219 SLPYLKQIVDSVKL-THPNLPLILY-----------------------------ASGSGG 248 query 119 --------RVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVD-------------- 156 ::::::: d1j93a_ 249 LLERLPLTGVDVVSL-------------------------------DWTVDMADGRRRLG 277 query 157 ---IALAICEDLWQDG------------------GRVPAARSAGA---GLLLSV---NAS 189 ::::: ::::: ::::: ::: d1j93a_ 278 PNVAIQGN--------VDPGVLFGSKEFITNRINDTVKK------AGKGKHIL-NLGHGI 322 query 190 PYERDKD-----DTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVAR 244 : ::::::::::: d1j93a_ 323 K------VGTPEENFAHFFEIAK------------------------------------- 339 query 245 APQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADRL-- 302 d1j93a_ 340 ----------------------------------------------------------GL 341 query 303 -- 303 d1j93a_ 342 RY 343 TMalign alignment (TM-score: 0.44 Raw score:131.70) query 1 SLQLRL------------------------------------------------------ 6 ::::: d1j93a_ 1 -TQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQP 59 query 7 ------ALNQIDSTVGDIAGN--------------------------------A---E-A 24 ::::::::::::::: : : : d1j93a_ 60 WKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPY 119 query 25 ILRWTRHSAE--QGAHLVAFPEMAL-TG-YP-----VE--D-LAL---------RSSFVE 63 :::::::::: ::::::::::::: :: :: :: : ::: :::::: d1j93a_ 120 VGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQ 179 query 64 ASRTALRELAARLAEEGFGELPVLVGYLDRS--ESAQPKYGQPAGAPR-NAA-AV--LHR 117 :::::::::::::::: : ::::::::::: : :::::::::: ::: :: ::: d1j93a_ 180 KFATSMAKYIRYQADS-G--AQAVQIFDSWATE---L-SPVDFEEFSLPYLKQIVDSVKL 232 query 118 GRV-ALTFA-KHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAA 175 ::: ::::: :::::: : :::::::::: ::::::::::::::::: d1j93a_ 233 THPNLPLILYASGSGG------L--LERLPLTGVD--------VVSLDWTVDMADGRRRL 276 query 176 RSAGAGLLLSVNASPYERDKDD--TRLELVRKRAQEAGCT-TAYLA-MIGGQDELVFD-G 230 ::: : ::::::: ::::::: :::::::::::::::: ::::: ::: :::: : d1j93a_ 277 GPN-V--AIQGNVD-PGVLFGSKEFITNRINDTVKKAGKGKHILNLGHGI----KVGTPE 328 query 231 --DSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLP 288 ::::: ::::: ::: d1j93a_ 329 ENFAHFF---EIAKG-------------LRY----------------------------- 343 query 289 AYEAELAGGYADRL 302 d1j93a_ 344 -------------- 344 HHsearch alignment (Probability: 0.14 E-value:0.02) query 18 IAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLA 77 ::::::::::::::::::::::::::::::::::::: ::::::::::::::::: d1j93a_ 178 LQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVD------FEEFSLPYLKQIVDSVK 231 query 78 EEGFGELPVLV 88 :::: :::::: d1j93a_ 232 LTHP-NLPLIL 241
Intermediate <-- 0.954 --> HitDALI alignment (Z-score: 11.6 Raw score:1346.10) d1j93a_ 1 tqpllldavrgkeverPPVWLMRQAGRymkSYQLLcekyplfrdrsenvdlvveISLQPW 60 ::::::::::: ::::: :::::: d1hkka1 1 ----------------AKLVCYFTNWA---QYRQG---------------earfLPKDLD 26 d1j93a_ 61 KvFRPDGVILFSDILTPLsgmnipfdiikgkgpvifdplrtaadvekvrefipeksvpYV 120 : :::::::::::::::: :: d1hkka1 27 P-SLCTHLIYAFAGMTNH---------------------------------qlsttewND 52 d1j93a_ 121 GEALTILRKEVN--NQAAVLGFVG----apfTLASyvveggssknftkikrlafaepkvl 174 :::::::::::: :::::::::: :::: d1hkka1 53 ETLYQEFNGLKKmnPKLKTLLAIGgwnfgtqKFTD------------------------- 87 d1j93a_ 175 haLLQKFATSMAKYIRYQAD-SGAQAVQIFDSWATE--LSPVDFEeFSLPYLKQIVDSVK 231 :::::::::::::::::: ::::::::::::::: ::::::: :::::::::::::: d1hkka1 88 mvATANNRQTFVNSAIRFLRkYSFDGLDLDWEYPGSqgSPAVDKE-RFTTLVQDLANAFQ 146 d1j93a_ 232 LTH-----pNLPLILYASGsGGLL---eRLPLT--GVDVVSLDWT--------------- 266 ::: :::::::::: :::: ::::: :::::::::: d1hkka1 147 QEAqtsgkeRLLLSAAVPAgQTYVdagyEVDKIaqNLDFVNLMAYdfhgswekvtghnsp 206 d1j93a_ 267 -------------vDMADGRRRL--GPNV--AIQGNVdPGVLfgsKEFITNRINDTVKKA 309 ::::::::: :::: :::::: :::: ::::::::::::::: d1hkka1 207 lykrqeqsgaaaslNVDAAVQQWlqKGTPasKLILGM-PTDD---VESFKTKVSYLKQKG 262 d1j93a_ 310 GkgkHILNLgHGIKVGT---------PEENFAHFFEIAkglry 343 : ::::: ::::::: :::::::::::: d1hkka1 263 L---GGAMV-WALDLDDfagfscnqgRYPLIQTLRQEL----- 296 FAST alignment (Normalized score: 6.24 Raw score:1989.00) d1j93a_ 1 TQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVE------ 54 ::::: :::::: d1hkka1 1 ----------------AKLVC-YFTNWA--------------------------QYRQGE 17 d1j93a_ 55 ---ISLQPWKVF----RPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEK 107 :::: :::::::: d1hkka1 18 ARFLPKD-----LDPSLCTHLIYA------------------------------------ 36 d1j93a_ 108 VREFIPEKS------------VPYVGEALTILRKEV--NNQAAVLGFVGAPFTLASYVVE 153 ::::::::::::::: ::::::::: d1hkka1 37 ---------FAGMTNHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLA------------- 74 d1j93a_ 154 GGSSKNFTKIKRLAFAEPKV----------------LHALLQKFATSMAKYIRYQADSGA 197 :::::::::::::::::: ::: d1hkka1 75 --------------------IGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRK---YSF 111 d1j93a_ 198 QAVQIFDSWA---TELSPVDFEEFSLPYLKQIVDSVKLTHP-------NLPLILYASGSG 247 ::::::::: :::: ::::::::::::::::::::: :::::::: d1hkka1 112 DGLDLDWEY-PGSQGSP-AVDKERFTTLVQDLANAFQQE--AQTSGKERLLLSAAV---- 163 d1j93a_ 248 G-----------LLERLPLTGVDVVSLDWT------------------------------ 266 ::::::: ::::::: d1hkka1 164 -PAGQTYVDAGYEVDKIAQ-NLDFVNL---MAYDFHGSWEKVTGHNSPLYKRQEQSGAAA 218 d1j93a_ 267 -VDMADGRRR-----LGPNVAIQ---GNVDPGVLFGSKEFITNRINDTVKKAGKGKHILN 317 ::::::::: :::: :::: :::::::::::::::: d1hkka1 219 SLNVDAAVQQWLQKGTPAS----KLILGMP----TDDVESFKTKVSYLKQ---------- 260 d1j93a_ 318 LGHGI----------KVGTP-----------EENFAHFFEIAKGLRY-- 343 :::: ::::::::: d1hkka1 261 -----KGLGGAMVWALDLD-DFAGFSCNQGRYPLIQTLRQ-------EL 296 TMalign alignment (TM-score: 0.55 Raw score:187.31) d1j93a_ 1 TQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLL--CEKYPLFRDRSENVDLVVEISLQ 58 ::::::::::: ::::: : :: :: d1hkka1 1 ----------------AKLVCYFTNWA---QYRQGEA---------------R--FL-PK 23 d1j93a_ 59 PWKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVP 118 :::::::::::::::: :: : ::::: ::: d1hkka1 24 DLDPSLCTHLIYAFAG--MT--N----------------------------HQLST-TEW 50 d1j93a_ 119 YVGEALTILRKEVN--NQAAVLGFVGA-PFTLASYVVEGGSSKNFTKIKRLAFAEPKVLH 175 :::::::::::::: ::::::::::: ::::::: : :: d1hkka1 51 NDETLYQEFNGLKKMNPKLKTLLAIGGW--NFGTQKF----------T----------DM 88 d1j93a_ 176 ALLQKFATSMAKYIRYQADS-GAQAVQIFDSWATEL-SPVDFEEFSLPYLKQIVDSVKLT 233 :::::::::::::::::::: ::::::::::::::: ::::::::::::::::::::::: d1hkka1 89 VATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAVDKERFTTLVQDLANAFQQE 148 d1j93a_ 234 HP-----NLPLILYAS-G--SGG--L-LERLPLTGVDVVSLDW----------------- 265 :: ::::::::: : ::: : :::::: ::::::::: d1hkka1 149 AQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQ-NLDFVNLMAYDFHGSWEKVTGHNSPL 207 d1j93a_ 266 --------------T-VDMADGRRRLGPNVAIQGNVDPGVLFGSKEFITNRINDTVKKAG 310 : :::::::::::::::::::: : ::: :::::::::::::::: d1hkka1 208 YKRQEQSGAAASLNVDAAVQQWLQKGTPASKLILGM-P--TDD-VESFKTKVSYLKQKGL 263 d1j93a_ 311 KGKHILNLGHGIKVGTP----EE-N-FAHFFEIAKGLRY 343 ::::: ::::::: :: : :::::::::::: d1hkka1 264 ---GGAMV--WALDLDDFAGFSCNQGRYPLIQTLRQEL- 296 HHsearch alignment (Probability: 0.24 E-value:0.11) d1j93a_ 119 YVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALL 178 :::::::::::::::::::::: :: ::: ::::::: :::::::::::: d1hkka1 54 TLYQEFNGLKKMNPKLKTLLAI-GG-WNF--------GTQKFTD----MVATANNRQTFV 99 d1j93a_ 179 QKFATSMAKYIRYQADSGAQAVQI-FDSWAT-ELSPVDFEEFSLPYLKQIVDSVKLTHPN 236 :::::: : :::::::::: :::::: :::::::: ::::::::::::::::::: d1hkka1 100 NSAIRF----L---RKYSFDGLDLDWEYPGSQGSPAVDKE-RFTTLVQDLANAFQQEAQT 151 d1j93a_ 237 --LP---L-ILYASG------------SGGLLERLPLTGVDVVS---------------- 262 :: : :::::: ::::::::::::::::: d1hkka1 152 SGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQ 211 d1j93a_ 263 ----LDWTVDMADGRRRLGPNVAIQGNVDPGV-----LFGSKEFITNRINDTVKKAGKGK 313 :::::::::::::: ::::::::: ::::::::::::::::::::::: d1hkka1 212 EQSGAAASLNVDAAVQQW-----LQKGTPASKLILGMPTDDVESFKTKVSYLKQKGLGGA 266 d1j93a_ 314 HILNLGHG 321 :::::::: d1hkka1 267 MVWALDLD 274