Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1j93a_ | Uroporphyrinogen decarboxylase, UROD | UROD/MetE-like | TIM beta/alpha-barrel | α/β |
| Hit | d1gjwa2 | Maltosyltransferase | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
Query <-- 0.875 --> IntermediateDALI alignment (Z-score: 2.8 Raw score:517.50) query 1 ------------------------------------------------------------ 1 d1j93a_ 1 tqpllldavrgkeverppvwlmrqagrymksyqllcekyplfrdrsenvdlvveislqpw 60 query 1 ------------------------------------------------------------ 1 d1j93a_ 61 kvfrpdgvilfsdiltplsgmnipfdiikgkgpvifdplrtaadvekvrefipeksvpyv 120 query 1 ------------sLQLRLALN-qidSTVG---------------------------DIAG 20 :::::::: :::: :::: d1j93a_ 121 gealtilrkevnnQAAVLGFVgapfTLASyvveggssknftkikrlafaepkvlhaLLQK 180 query 21 NAEAILRWTRHSAEQGAHLVAFPEMaltgypvedLALRSSFVEASRTALRELAARLAEEg 80 ::::::::::::::::::::::::: ::::::::::::::::::::::::: d1j93a_ 181 FATSMAKYIRYQADSGAQAVQIFDS------watELSPVDFEEFSLPYLKQIVDSVKLT- 233 query 81 FGELPVLVGY---lDRSEsaqpkygqpagaprnaaavlhrgRVALTFAKHhlpnygvfde 137 :::::::::: :::: ::::::::: d1j93a_ 234 HPNLPLILYAsgsgGLLE------------------rlpltGVDVVSLDW---------- 265 query 138 fryfvPGDTMpivrlhgvdialaiceDLWQD----ggrvPAARSAGaglllsvnaspyer 193 ::::: ::::: ::::::: d1j93a_ 266 -----TVDMAdgrrrlgpnvaiqgnvDPGVLfgskefitNRINDTV---kkagkgkhiln 317 query 194 dkddtRLELvRKRAQEAGcttaylamiggqdelvfdgdsivvdrdgevvarapqfsegcv 253 :::: :::::::: d1j93a_ 318 lghgiKVGTpEENFAHFF------------------------------------------ 335 query 254 vldldlpaaEAEPptgvvddglridrlviseeplpayeaelaggyadrl 302 :::: d1j93a_ 336 -----eiakGLRY------------------------------------ 343 FAST alignment (Normalized score: 2.91 Raw score:937.50) query 1 S----------------------------------------------------------- 1 d1j93a_ 1 -TQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQP 59 query 2 ------------------------------------------------------------ 2 d1j93a_ 60 WKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPY 119 query 2 --------------LQLRLALNQIDSTV-------------------------------- 15 :::::::: d1j93a_ 120 VGEALTILRKEVNNQAAVLGFV------GAPFTLASYVVEGGSSKNFTKIKRLAFAEPKV 173 query 16 --GDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLAL--------RSSFV-EA 64 ::::::::::::::::::::::::::: ::::: :: d1j93a_ 174 LHALLQKFATSMAKYIRYQADSGAQAVQI---------------FDSWATELSPVDFEEF 218 query 65 SRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRG------ 118 :::::::::::::: :::::::::: d1j93a_ 219 SLPYLKQIVDSVKL-THPNLPLILY-----------------------------ASGSGG 248 query 119 --------RVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVD-------------- 156 ::::::: d1j93a_ 249 LLERLPLTGVDVVSL-------------------------------DWTVDMADGRRRLG 277 query 157 ---IALAICEDLWQDG------------------GRVPAARSAGA---GLLLSV---NAS 189 ::::: ::::: ::::: ::: d1j93a_ 278 PNVAIQGN--------VDPGVLFGSKEFITNRINDTVKK------AGKGKHIL-NLGHGI 322 query 190 PYERDKD-----DTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVAR 244 : ::::::::::: d1j93a_ 323 K------VGTPEENFAHFFEIAK------------------------------------- 339 query 245 APQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADRL-- 302 d1j93a_ 340 ----------------------------------------------------------GL 341 query 303 -- 303 d1j93a_ 342 RY 343 TMalign alignment (TM-score: 0.44 Raw score:131.70) query 1 SLQLRL------------------------------------------------------ 6 ::::: d1j93a_ 1 -TQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQP 59 query 7 ------ALNQIDSTVGDIAGN--------------------------------A---E-A 24 ::::::::::::::: : : : d1j93a_ 60 WKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPY 119 query 25 ILRWTRHSAE--QGAHLVAFPEMAL-TG-YP-----VE--D-LAL---------RSSFVE 63 :::::::::: ::::::::::::: :: :: :: : ::: :::::: d1j93a_ 120 VGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQ 179 query 64 ASRTALRELAARLAEEGFGELPVLVGYLDRS--ESAQPKYGQPAGAPR-NAA-AV--LHR 117 :::::::::::::::: : ::::::::::: : :::::::::: ::: :: ::: d1j93a_ 180 KFATSMAKYIRYQADS-G--AQAVQIFDSWATE---L-SPVDFEEFSLPYLKQIVDSVKL 232 query 118 GRV-ALTFA-KHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAA 175 ::: ::::: :::::: : :::::::::: ::::::::::::::::: d1j93a_ 233 THPNLPLILYASGSGG------L--LERLPLTGVD--------VVSLDWTVDMADGRRRL 276 query 176 RSAGAGLLLSVNASPYERDKDD--TRLELVRKRAQEAGCT-TAYLA-MIGGQDELVFD-G 230 ::: : ::::::: ::::::: :::::::::::::::: ::::: ::: :::: : d1j93a_ 277 GPN-V--AIQGNVD-PGVLFGSKEFITNRINDTVKKAGKGKHILNLGHGI----KVGTPE 328 query 231 --DSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLP 288 ::::: ::::: ::: d1j93a_ 329 ENFAHFF---EIAKG-------------LRY----------------------------- 343 query 289 AYEAELAGGYADRL 302 d1j93a_ 344 -------------- 344 HHsearch alignment (Probability: 0.14 E-value:0.02) query 18 IAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLA 77 ::::::::::::::::::::::::::::::::::::: ::::::::::::::::: d1j93a_ 178 LQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVD------FEEFSLPYLKQIVDSVK 231 query 78 EEGFGELPVLV 88 :::: :::::: d1j93a_ 232 LTHP-NLPLIL 241
Intermediate <-- 1.187 --> HitDALI alignment (Z-score: 11.0 Raw score:1353.30) d1j93a_ 1 ------------------------------------------------------------ 1 d1gjwa2 1 mllreinryckekatgkriyavpklwipgffkkfdeksgrcfvdpyelgaeitdwilnqs 60 d1j93a_ 1 -------------tqpllLDAVrgkeverPPVWLMRQAGRYmkSYQLL----cEKYPlfr 43 :::: :::::::::::: ::::: :::: d1gjwa2 61 rewdysqplsflkgektpDWIK-------RSVVYGSLPRTT--AAYNHkgsgyYEEN-dv 110 d1j93a_ 44 drsenvdLVVEIslqPWKVFR---PDGVILFSDilTPLSgmniPFDIIkGKGPvifdplr 100 ::::: :::::: ::::::::: :::: ::::: :::: d1gjwa2 111 lgfreagTFFKM-mlLLPFVKslgADAIYLLPV--SRMS----DLFKK-GDAP------- 155 d1j93a_ 101 taadvekvreFIPE---------ksvpyvGEALTILRKEV-NNQAAVLGFVGA------- 143 :::: ::::::::::: :::::::::::: d1gjwa2 156 ----spysvkNPMElderyhdpllepfkvDEEFKAFVEAChILGIRVILDFIPrtaards 211 d1j93a_ 144 ------------------------------------------------------------ 144 d1gjwa2 212 dlirehpdwfywikveeladytppraeelpfkvpdedeleiiynkenvkrhlkkftlppn 271 d1j93a_ 144 -----------------------------------------------------pftlasy 150 d1gjwa2 272 lidpqkwekikreegnilelivkefgiitppgfsdlindpqptwddvtflrlyldhpeas 331 d1j93a_ 151 vveggssknftkikrlafaepkvlhallqkfatsmAKYIRYQAD-SGAQAVQIFDSWAte 209 ::::::::: ::::::::::::: d1gjwa2 332 krfldpnqppyvlydvikaskfpgkepnrelweylAGVIPHYQKkYGIDGARLDMGHA-- 389 d1j93a_ 210 lspvdfeeFSLPYLKQIVDSVKLTHPNLPLILYASgSGGLLERLPLTGVDVVSLDWTV-- 267 ::::::::::::::::::::::::::: :::::::::::::::::::::: d1gjwa2 390 --------LPKELLDLIIKNVKEYDPAFVMIAEEL-DMEKDKASKEAGYDVILGSSWYfa 440 d1j93a_ 268 -------dMADGRRRLgpNVAIQGNVDP----GVLFG--SKEFITNRINDTVKKAgkgKH 314 :::::::: :::::::::: ::::: :::::::::::::::: :: d1gjwa2 441 grveeigkLPDIAEEL--VLPFLASVETpdtpRIATRkyASKMKKLAPFVTYFLP---NS 495 d1j93a_ 315 ILNLgHGIK------------------------------------------vGTPEENFA 332 :::: :::: :::::::: d1gjwa2 496 IPYV-NTGQeigekqpmnlgldtdpnlrkvlsptdeffgklaffdhyvlhwdSPDRGVLN 554 d1j93a_ 333 HFFEIAKGLRY------- 343 ::::::::::: d1gjwa2 555 FIKKLIKVRHEfldfvln 572 FAST alignment (Normalized score: 5.30 Raw score:2350.00) d1j93a_ 1 TQPLLLDAVRGKEVER-------------------------------------------- 16 d1gjwa2 1 ----------------MLLREINRYCKEKATGKRIYAVPKLWIPGFFKKFDEKSGRCFVD 44 d1j93a_ 17 --------------------------------------PPVWLMRQAGRYMKSYQLLCEK 38 ::::: d1gjwa2 45 PYELGAEITDWILNQSREWDYSQPLSFLKGEKTPDWIKRSVVY----------------- 87 d1j93a_ 39 YPLFRDRS-----------------------------ENVDLVVEISLQPWKVFRPDGVI 69 ::::::::::::: ::::::::: d1gjwa2 88 --------GSLPRTTAAYNHKGSGYYEENDVLGFREAGTFFKMMLLLPFV-KSLGADAIY 138 d1j93a_ 70 LFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKS------------- 116 : d1gjwa2 139 L----------------------------------------------LPVSRMSDLFKKG 152 d1j93a_ 117 ----------------------------VPYVGEALTILRKEVNN-QAAVLGFVGAPFTL 147 ::::::::::::: :::::::: d1gjwa2 153 DAPSPYSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHI----LGIRVILDF------ 202 d1j93a_ 148 ASYVVE------------------------------------------------------ 153 d1gjwa2 203 ------IPRTAARDSDLIREHPDWFYWIKVEELADYTPPRAEELPFKVPDEDELEIIYNK 256 d1j93a_ 154 --------------------------------------------GGSSKNFTKIKRLAFA 169 :::: d1gjwa2 257 ENVKRHLKKFTLPPNLIDPQKWEKIKREEGNILELIVKEFGIITPPGF------------ 304 d1j93a_ 170 ---------------------------------------EPKVLHAL----------LQK 180 ::::: ::: d1gjwa2 305 SDLINDPQPTWDDVTFLRLYLDHPEASKRFLDPNQPPYVLYDVI---KASKFPGKEPNRE 361 d1j93a_ 181 FATSMAKYIRYQAD-SGAQAVQIFDSWATELSPVDFEEF------SLPYLKQIVDSVKLT 233 :::::::::::::: :::::::: ::::::::::::::: d1gjwa2 362 LWEYLAGVIPHYQKKYGIDGARL----------------DMGHALPKELLDLIIKNVKEY 405 d1j93a_ 234 HPNLPLILYASGSGGLLERLPLTGVDVVSLDWTV-------------DMADGRRRLGPNV 280 ::::::::::: :::::::::::::::::: :::::::: ::: d1gjwa2 406 DPAFVMIAEEL-DMEKDKASKEAGYDVILG----SSWYFAGRVEEIGKLPDIAEE--LVL 458 d1j93a_ 281 AIQGNVDP-------GVLFG--SKEFITNRINDTVKKAG-KGKHILNLGHGIK------- 323 ::::: ::::: ::::::::::::: :::::::: d1gjwa2 459 PFLAS---VETPDTPRIATRKYASKMKKLAPFVTY----FLPNSIPYV-----NTGQEIG 506 d1j93a_ 324 ---------------------------------------VGTPEENFAHFFEIAKGLRY- 343 ::::::::::::::::: d1gjwa2 507 EKQPMNLGLDTDPNLRKVLSPTDEFFGKLAFFDHYVLHWDSPDRGVLNFIKKLIKV---R 563 d1j93a_ 344 --------- 344 d1gjwa2 564 HEFLDFVLN 572 TMalign alignment (TM-score: 0.62 Raw score:214.31) d1j93a_ 1 ------------------------------------------------------------ 1 d1gjwa2 1 MLLREINRYCKEKATGKRIYAVPKLWIPGFFKKFDEKSGRCFVDPYELGAEITDWILNQS 60 d1j93a_ 1 T-------QP--LLL-D-AVRGKEVERPPVWLMRQAGRYMKSYQL----LCEKY----PL 41 : :: : : :::::: :::::::::::::::::: ::::: d1gjwa2 61 REWDYSQPLSFL--KGEK-TPDWIK--RSVVYGSLPRTTAAYNHKGSGYYEENDVLGF-- 113 d1j93a_ 42 FRDRSENVDLVVEISLQPWKVFR---PDGVILFSDILTPLSGMNIPFDIIKGK--GPVIF 96 ::: :::::::::::::: :::::::::: : : ::::::: ::::: d1gjwa2 114 --REA----GTFFKMMLLLPFVKSLGADAIYLLPVS-R-M------SDLFKKGDAPSPYS 159 d1j93a_ 97 -DPLRTAADVEKVREFIPE-KS-V-------PYVGEALTILRKEVNNQAAVLGFVGAPFT 146 :: :::: : : :::::::::::::::::::::::::::: d1gjwa2 160 V-----------KN-PMELD-ERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFIPR- 205 d1j93a_ 147 LASY-V------------------------------------------------------ 151 :::: : d1gjwa2 206 TAARDSDLIREHPDWFYWIKVEELADYTPPRAEELPFKVPDEDELEIIYNKENVKRHLKK 265 d1j93a_ 152 ----------------------------------VEGGSS------KNFT---KI----- 163 :::::: :::: :: d1gjwa2 266 FTLPPNLIDPQKWEKIKREEGNILELIVKEFGIITPPGFSDLINDPQPTWDDVTFLRLYL 325 d1j93a_ 164 ----------------KRLAFAE----PKVLHALLQKFATSMAKYIRYQADSGAQAVQIF 203 ::::::: ::::::: ::::::::::::::::::::::::: d1gjwa2 326 DHPEASKRFLDPNQPPYVLYDVIKASKFPGKEPN-RELWEYLAGVIPHYQKKYGIDGARL 384 d1j93a_ 204 DSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLILYASGSGGLLERLPLTGVDVVSL 263 : :: : ::::::::::::::::::::::::: ::::::::::::::::::::: d1gjwa2 385 D-MG-------H-ALPKELLDLIIKNVKEYDPAFVMIA-EELDMEKDKASKEAGYDVILG 434 d1j93a_ 264 D-WTV--------DMADGRRRLGPNVAIQGNVDP----GVLF---GSKEFITNRINDTVK 307 : ::: :::::::::: ::::::::: :::: :: :::::::::::: d1gjwa2 435 SSWYFAGRVEEIGKLPDIAEELV--LPFLASVETPDTPRIATRKYAS-KMKKLAPFVTYF 491 d1j93a_ 308 KAGKGKHILNLGHGI---KVG----------------------------------T---P 327 ::: ::::::::: ::: : : d1gjwa2 492 LPN---SIPYVNTGQEIGEKQPMNLGLDTDPNLRKVLSPTDEFFGKLAFFDHYVLHWDSP 548 d1j93a_ 328 EE-NFAHFFEIAKGL-RY------ 343 :: :::::::::::: :: d1gjwa2 549 DRGVLNFIKKLIKVRHEFLDFVLN 572 HHsearch alignment (Probability: 0.04 E-value:0.03) d1j93a_ 282 IQGNVDPGVLF---GSKEFITNRINDTVKKAGKGKHILNLGHGI 322 ::::::::::: ::::::::::::::::::::::::: :::: d1gjwa2 463 SVETPDTPRIATRKYASKMKKLAPFVTYFLPNSIPYVNT-GQEI 505