Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1j93a_ | Uroporphyrinogen decarboxylase, UROD | UROD/MetE-like | TIM beta/alpha-barrel | α/β |
| Hit | d1ceoa_ | Endoglucanase CelC | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
Query <-- 0.875 --> IntermediateDALI alignment (Z-score: 2.8 Raw score:517.50) query 1 ------------------------------------------------------------ 1 d1j93a_ 1 tqpllldavrgkeverppvwlmrqagrymksyqllcekyplfrdrsenvdlvveislqpw 60 query 1 ------------------------------------------------------------ 1 d1j93a_ 61 kvfrpdgvilfsdiltplsgmnipfdiikgkgpvifdplrtaadvekvrefipeksvpyv 120 query 1 ------------sLQLRLALN-qidSTVG---------------------------DIAG 20 :::::::: :::: :::: d1j93a_ 121 gealtilrkevnnQAAVLGFVgapfTLASyvveggssknftkikrlafaepkvlhaLLQK 180 query 21 NAEAILRWTRHSAEQGAHLVAFPEMaltgypvedLALRSSFVEASRTALRELAARLAEEg 80 ::::::::::::::::::::::::: ::::::::::::::::::::::::: d1j93a_ 181 FATSMAKYIRYQADSGAQAVQIFDS------watELSPVDFEEFSLPYLKQIVDSVKLT- 233 query 81 FGELPVLVGY---lDRSEsaqpkygqpagaprnaaavlhrgRVALTFAKHhlpnygvfde 137 :::::::::: :::: ::::::::: d1j93a_ 234 HPNLPLILYAsgsgGLLE------------------rlpltGVDVVSLDW---------- 265 query 138 fryfvPGDTMpivrlhgvdialaiceDLWQD----ggrvPAARSAGaglllsvnaspyer 193 ::::: ::::: ::::::: d1j93a_ 266 -----TVDMAdgrrrlgpnvaiqgnvDPGVLfgskefitNRINDTV---kkagkgkhiln 317 query 194 dkddtRLELvRKRAQEAGcttaylamiggqdelvfdgdsivvdrdgevvarapqfsegcv 253 :::: :::::::: d1j93a_ 318 lghgiKVGTpEENFAHFF------------------------------------------ 335 query 254 vldldlpaaEAEPptgvvddglridrlviseeplpayeaelaggyadrl 302 :::: d1j93a_ 336 -----eiakGLRY------------------------------------ 343 FAST alignment (Normalized score: 2.91 Raw score:937.50) query 1 S----------------------------------------------------------- 1 d1j93a_ 1 -TQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQP 59 query 2 ------------------------------------------------------------ 2 d1j93a_ 60 WKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPY 119 query 2 --------------LQLRLALNQIDSTV-------------------------------- 15 :::::::: d1j93a_ 120 VGEALTILRKEVNNQAAVLGFV------GAPFTLASYVVEGGSSKNFTKIKRLAFAEPKV 173 query 16 --GDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLAL--------RSSFV-EA 64 ::::::::::::::::::::::::::: ::::: :: d1j93a_ 174 LHALLQKFATSMAKYIRYQADSGAQAVQI---------------FDSWATELSPVDFEEF 218 query 65 SRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRG------ 118 :::::::::::::: :::::::::: d1j93a_ 219 SLPYLKQIVDSVKL-THPNLPLILY-----------------------------ASGSGG 248 query 119 --------RVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVD-------------- 156 ::::::: d1j93a_ 249 LLERLPLTGVDVVSL-------------------------------DWTVDMADGRRRLG 277 query 157 ---IALAICEDLWQDG------------------GRVPAARSAGA---GLLLSV---NAS 189 ::::: ::::: ::::: ::: d1j93a_ 278 PNVAIQGN--------VDPGVLFGSKEFITNRINDTVKK------AGKGKHIL-NLGHGI 322 query 190 PYERDKD-----DTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVAR 244 : ::::::::::: d1j93a_ 323 K------VGTPEENFAHFFEIAK------------------------------------- 339 query 245 APQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADRL-- 302 d1j93a_ 340 ----------------------------------------------------------GL 341 query 303 -- 303 d1j93a_ 342 RY 343 TMalign alignment (TM-score: 0.44 Raw score:131.70) query 1 SLQLRL------------------------------------------------------ 6 ::::: d1j93a_ 1 -TQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQP 59 query 7 ------ALNQIDSTVGDIAGN--------------------------------A---E-A 24 ::::::::::::::: : : : d1j93a_ 60 WKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPY 119 query 25 ILRWTRHSAE--QGAHLVAFPEMAL-TG-YP-----VE--D-LAL---------RSSFVE 63 :::::::::: ::::::::::::: :: :: :: : ::: :::::: d1j93a_ 120 VGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQ 179 query 64 ASRTALRELAARLAEEGFGELPVLVGYLDRS--ESAQPKYGQPAGAPR-NAA-AV--LHR 117 :::::::::::::::: : ::::::::::: : :::::::::: ::: :: ::: d1j93a_ 180 KFATSMAKYIRYQADS-G--AQAVQIFDSWATE---L-SPVDFEEFSLPYLKQIVDSVKL 232 query 118 GRV-ALTFA-KHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAA 175 ::: ::::: :::::: : :::::::::: ::::::::::::::::: d1j93a_ 233 THPNLPLILYASGSGG------L--LERLPLTGVD--------VVSLDWTVDMADGRRRL 276 query 176 RSAGAGLLLSVNASPYERDKDD--TRLELVRKRAQEAGCT-TAYLA-MIGGQDELVFD-G 230 ::: : ::::::: ::::::: :::::::::::::::: ::::: ::: :::: : d1j93a_ 277 GPN-V--AIQGNVD-PGVLFGSKEFITNRINDTVKKAGKGKHILNLGHGI----KVGTPE 328 query 231 --DSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLP 288 ::::: ::::: ::: d1j93a_ 329 ENFAHFF---EIAKG-------------LRY----------------------------- 343 query 289 AYEAELAGGYADRL 302 d1j93a_ 344 -------------- 344 HHsearch alignment (Probability: 0.14 E-value:0.02) query 18 IAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLA 77 ::::::::::::::::::::::::::::::::::::: ::::::::::::::::: d1j93a_ 178 LQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVD------FEEFSLPYLKQIVDSVK 231 query 78 EEGFGELPVLV 88 :::: :::::: d1j93a_ 232 LTHP-NLPLIL 241
Intermediate <-- 1.309 --> HitDALI alignment (Z-score: 12.6 Raw score:1484.20) d1j93a_ 1 tQPLLldavrgkeverpPVWLMRQAGrymksyqllcekypLFRDRsenvDLVVEisLQPW 60 :::: ::::::::: ::::: ::::: :::: d1ceoa_ 1 -MVSF------------KAGINLGGW---------isqyqVFSKE--hfDTFIT--EKDI 34 d1j93a_ 61 KVFR---PDGVILFSDILTPLsGMNIpfdiikgkgpvifdplrtaadvekvREFIpekSV 117 :::: :::::::::::::: :::: :::: :: d1ceoa_ 35 ETIAeagFDHVRLPFDYPIIE-SDDN-------------------------VGEY---KE 65 d1j93a_ 118 PYVgEALTILRKEVN-NQAAVLGFVGapfTLASYvveggssknftkikrlafaepkvLHA 176 ::: ::::::::::: :::::::::: ::::: ::: d1ceoa_ 66 DGL-SYIDRCLEWCKkYNLGLVLDMH--hAPGST---------------------lfEDP 101 d1j93a_ 177 LLQKFATSMAKYIRYQAD--sgaQAVQIFDSwaTELSpvDFEEfSLPYLKQIVDSVKLTH 234 :::::::::::::::::: :::::::: :::: :::: :::::::::::::::: d1ceoa_ 102 NQQKRFVDIWRFLAKRYInerehIAFELLNQ--VVEP--DSTR-WNKLMLECIKAIREID 156 d1j93a_ 235 PNLPLILYA--SGSGGLLERLPLT--gvDVVSLDWT------------------------ 266 ::::::::: ::::::::::::: :::::::: d1ceoa_ 157 STMWLYIGGnnYNSPDELKNLADIdddyIVYNFHFYnpfffthqkahwsesamaynrtvk 216 d1j93a_ 267 -----------------------------------vDMADGRRRL--GPNVAIQGNVDpG 289 ::::::::: ::::::::::: : d1ceoa_ 217 ypgqyegieefvknnpkysfmmelnnlklnkellrkDLKPAIEFRekKKCKLYCGEFG-V 275 d1j93a_ 290 VLFGSKEFITNRINDTVKKAGKGKHILNLgHGIKVGT--------PEENfAHFFEIAKGl 341 ::::::::::::::::::::::::::::: ::::::: :::: ::::::::: d1ceoa_ 276 IAIADLESRIKWHEDYISLLEEYDIGGAV-WNYKKMDfeiynedrKPVS-QELVNILAR- 332 d1j93a_ 342 ry 343 d1ceoa_ 333 -- 333 FAST alignment (Normalized score: 5.03 Raw score:1696.00) d1j93a_ 1 TQPLLLDAVRGKEVERP----PVWLMRQAGRYMKSYQLLCEKY--------------PLF 42 :::: ::: d1ceoa_ 1 -----------------MVSFKAGI------------------NLGGWISQYQVFSKEHF 25 d1j93a_ 43 RDRSENVDL-VVEISLQPWKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRT 101 ::: :::::::::: ::::::::::::::: d1ceoa_ 26 DTF------ITEKDIETIAE-AGFDHVRLPFDYPII------------------------ 54 d1j93a_ 102 AADVEKVREFI---------PEKSVPYVGEALTILRKEVNN-QAAVLGFVGAPFTLASYV 151 ::::::::::::::::: ::::::: d1ceoa_ 55 -----------ESDDNVGEYKEDGLSYIDRCLEWCKK----YNLGLVLD----------- 88 d1j93a_ 152 VEGGSSKNF------TKIKRLAFAEPKVLHALLQKFATSMAKYIRYQADSGA----QAVQ 201 ::::: ::::::::::::::::::::: :::: d1ceoa_ 89 ---------MHHAPGSTLFE--------DPNQQKRFVDIWRFLAKRYIN---EREHIAFE 128 d1j93a_ 202 IFDSWATELSPVDF-----EEFSLPYLKQIVDSVKLTHPNLPLILYASGS------GGLL 250 :::: ::::::::::::::::::::::::::: :::: d1ceoa_ 129 -LLNQ---------VVEPDSTRWNKLMLECIKAIREIDSTMWLYIG----GNNYNSPDEL 174 d1j93a_ 251 ERLPLTGV--------DVVSLDWTVDMADGRRRLGPNVAIQGNVDPGVLF---------- 292 :: ::::: d1ceoa_ 175 KN------LADIDDDYIVYNF-----------------------------HFYNPFFFTH 199 d1j93a_ 293 ---------------------------------------------GSKEFITNRINDTVK 307 ::::::::::::::: d1ceoa_ 200 QKAHWSESAMAYNRTVKYPGQYEGIEEFVKNNPKYSFMMELNNLKLNKELLRKDLKPAIE 259 d1j93a_ 308 KAGKG------KHILNLG--HGIKVGTPEENFAHFFEIAKGLRY---------------- 343 : :::: :::::::::::::::::::: d1ceoa_ 260 F----REKKKCKLYC---GEFGVIAIADLESRIKWHEDYI----SLLEEYDIGGAVWNYK 308 d1j93a_ 344 ------------------------ 344 d1ceoa_ 309 KMDFEIYNEDRKPVSQELVNILAR 332 TMalign alignment (TM-score: 0.59 Raw score:203.11) d1j93a_ 1 TQPLLLDAVRGKEVERPPVWLMRQAGR--YMKSYQLLCEKYPLFRDRSENVDLVVEISLQ 58 :::: :::::::::: : : ::::::: : ::::::::: d1ceoa_ 1 -MVSF------------KAGINLGGWISQ-----Y--Q---VFSKEHF-D-TFITEKDIE 35 d1j93a_ 59 PWKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVP 118 ::::::::::::::::::::: :: :::::: :::: d1ceoa_ 36 TIAEAGFDHVRLPFDYPIIES---DD-----------------------NVGEYK-EDGL 68 d1j93a_ 119 YVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALL 178 ::::::::::::: ::::::::: :::: : :: : : ::::: d1ceoa_ 69 SYIDRCLEWCKKY--NLGLVLDMH---HAPG----------S--TL--F---E--DPNQQ 104 d1j93a_ 179 QKFATSMAKYIRYQADSG-AQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNL 237 :::::::::::::::::: ::::::::: :: ::: ::: ::::::::::::::::::: d1ceoa_ 105 KRFVDIWRFLAKRYINEREHIAFELLNQ-VV-EPD--STR-WNKLMLECIKAIREIDSTM 159 d1j93a_ 238 PLILYA-SGSG-GLLERLPLT-G-VDVVSLDWTV-------------------------- 267 :::::: :::: ::::::::: : :::::::::: d1ceoa_ 160 WLYIGGNNYNSPDELKNLADIDDDYIVYNFHFYNPFFFTHQKAHWSESAMAYNRTVKYPG 219 d1j93a_ 268 ---------------------------------DMADGRRRL-GPNVAIQGNVDPGVL-F 292 ::::::::: ::::::::::::::: : d1ceoa_ 220 QYEGIEEFVKNNPKYSFMMELNNLKLNKELLRKDLKPAIEFREKKKCKLYCGEFGVIAIA 279 d1j93a_ 293 ---GSKEFITNRINDTVKKAGKGKHILNLGHGI--KVGTPE-----ENFAHFFEIAKGLR 342 ::::::::::::::: :: ::::: ::: :::::: :::::::::::: d1ceoa_ 280 DLESRIKWHEDYISLLEE--YD--IGGAV-WNYKKMDFEIYNEDRKPVSQELVNILAR-- 332 d1j93a_ 343 Y 343 d1ceoa_ 333 - 333 HHsearch alignment (Probability: 0.28 E-value:0.01) d1j93a_ 294 SKEFITNRINDTVKKAGKGKH-ILNLGHGIKVGTPEEN----FAHFFEIAKGL 341 ::::::::::::::::::::: :::::::::::::::: ::::::::::: d1ceoa_ 246 NKELLRKDLKPAIEFREKKKCKLYCGEFGVIAIADLESRIKWHEDYISLLEEY 298