Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1j93a_ | Uroporphyrinogen decarboxylase, UROD | UROD/MetE-like | TIM beta/alpha-barrel | α/β |
| Hit | d1vjza_ | Endoglucanase homologue TM1752 | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
Query <-- 0.875 --> IntermediateDALI alignment (Z-score: 2.8 Raw score:517.50) query 1 ------------------------------------------------------------ 1 d1j93a_ 1 tqpllldavrgkeverppvwlmrqagrymksyqllcekyplfrdrsenvdlvveislqpw 60 query 1 ------------------------------------------------------------ 1 d1j93a_ 61 kvfrpdgvilfsdiltplsgmnipfdiikgkgpvifdplrtaadvekvrefipeksvpyv 120 query 1 ------------sLQLRLALN-qidSTVG---------------------------DIAG 20 :::::::: :::: :::: d1j93a_ 121 gealtilrkevnnQAAVLGFVgapfTLASyvveggssknftkikrlafaepkvlhaLLQK 180 query 21 NAEAILRWTRHSAEQGAHLVAFPEMaltgypvedLALRSSFVEASRTALRELAARLAEEg 80 ::::::::::::::::::::::::: ::::::::::::::::::::::::: d1j93a_ 181 FATSMAKYIRYQADSGAQAVQIFDS------watELSPVDFEEFSLPYLKQIVDSVKLT- 233 query 81 FGELPVLVGY---lDRSEsaqpkygqpagaprnaaavlhrgRVALTFAKHhlpnygvfde 137 :::::::::: :::: ::::::::: d1j93a_ 234 HPNLPLILYAsgsgGLLE------------------rlpltGVDVVSLDW---------- 265 query 138 fryfvPGDTMpivrlhgvdialaiceDLWQD----ggrvPAARSAGaglllsvnaspyer 193 ::::: ::::: ::::::: d1j93a_ 266 -----TVDMAdgrrrlgpnvaiqgnvDPGVLfgskefitNRINDTV---kkagkgkhiln 317 query 194 dkddtRLELvRKRAQEAGcttaylamiggqdelvfdgdsivvdrdgevvarapqfsegcv 253 :::: :::::::: d1j93a_ 318 lghgiKVGTpEENFAHFF------------------------------------------ 335 query 254 vldldlpaaEAEPptgvvddglridrlviseeplpayeaelaggyadrl 302 :::: d1j93a_ 336 -----eiakGLRY------------------------------------ 343 FAST alignment (Normalized score: 2.91 Raw score:937.50) query 1 S----------------------------------------------------------- 1 d1j93a_ 1 -TQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQP 59 query 2 ------------------------------------------------------------ 2 d1j93a_ 60 WKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPY 119 query 2 --------------LQLRLALNQIDSTV-------------------------------- 15 :::::::: d1j93a_ 120 VGEALTILRKEVNNQAAVLGFV------GAPFTLASYVVEGGSSKNFTKIKRLAFAEPKV 173 query 16 --GDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLAL--------RSSFV-EA 64 ::::::::::::::::::::::::::: ::::: :: d1j93a_ 174 LHALLQKFATSMAKYIRYQADSGAQAVQI---------------FDSWATELSPVDFEEF 218 query 65 SRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRG------ 118 :::::::::::::: :::::::::: d1j93a_ 219 SLPYLKQIVDSVKL-THPNLPLILY-----------------------------ASGSGG 248 query 119 --------RVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVD-------------- 156 ::::::: d1j93a_ 249 LLERLPLTGVDVVSL-------------------------------DWTVDMADGRRRLG 277 query 157 ---IALAICEDLWQDG------------------GRVPAARSAGA---GLLLSV---NAS 189 ::::: ::::: ::::: ::: d1j93a_ 278 PNVAIQGN--------VDPGVLFGSKEFITNRINDTVKK------AGKGKHIL-NLGHGI 322 query 190 PYERDKD-----DTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVAR 244 : ::::::::::: d1j93a_ 323 K------VGTPEENFAHFFEIAK------------------------------------- 339 query 245 APQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADRL-- 302 d1j93a_ 340 ----------------------------------------------------------GL 341 query 303 -- 303 d1j93a_ 342 RY 343 TMalign alignment (TM-score: 0.44 Raw score:131.70) query 1 SLQLRL------------------------------------------------------ 6 ::::: d1j93a_ 1 -TQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQP 59 query 7 ------ALNQIDSTVGDIAGN--------------------------------A---E-A 24 ::::::::::::::: : : : d1j93a_ 60 WKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSVPY 119 query 25 ILRWTRHSAE--QGAHLVAFPEMAL-TG-YP-----VE--D-LAL---------RSSFVE 63 :::::::::: ::::::::::::: :: :: :: : ::: :::::: d1j93a_ 120 VGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVLHALLQ 179 query 64 ASRTALRELAARLAEEGFGELPVLVGYLDRS--ESAQPKYGQPAGAPR-NAA-AV--LHR 117 :::::::::::::::: : ::::::::::: : :::::::::: ::: :: ::: d1j93a_ 180 KFATSMAKYIRYQADS-G--AQAVQIFDSWATE---L-SPVDFEEFSLPYLKQIVDSVKL 232 query 118 GRV-ALTFA-KHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAA 175 ::: ::::: :::::: : :::::::::: ::::::::::::::::: d1j93a_ 233 THPNLPLILYASGSGG------L--LERLPLTGVD--------VVSLDWTVDMADGRRRL 276 query 176 RSAGAGLLLSVNASPYERDKDD--TRLELVRKRAQEAGCT-TAYLA-MIGGQDELVFD-G 230 ::: : ::::::: ::::::: :::::::::::::::: ::::: ::: :::: : d1j93a_ 277 GPN-V--AIQGNVD-PGVLFGSKEFITNRINDTVKKAGKGKHILNLGHGI----KVGTPE 328 query 231 --DSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLP 288 ::::: ::::: ::: d1j93a_ 329 ENFAHFF---EIAKG-------------LRY----------------------------- 343 query 289 AYEAELAGGYADRL 302 d1j93a_ 344 -------------- 344 HHsearch alignment (Probability: 0.14 E-value:0.02) query 18 IAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLA 77 ::::::::::::::::::::::::::::::::::::: ::::::::::::::::: d1j93a_ 178 LQKFATSMAKYIRYQADSGAQAVQIFDSWATELSPVD------FEEFSLPYLKQIVDSVK 231 query 78 EEGFGELPVLV 88 :::: :::::: d1j93a_ 232 LTHP-NLPLIL 241
Intermediate <-- 1.349 --> HitDALI alignment (Z-score: 12.7 Raw score:1482.40) d1j93a_ 1 tqpllldavrgkeveRPPVWLMRqagrymksyqllcekyplfrdRSENvdlVVEISLQ-P 59 :::::::: :::: ::::::: : d1vjza_ 1 --------------iPRWRGFNL--------------leafsikSTGN---FKEEDFLwM 29 d1j93a_ 60 WKVfRPDGVILfsDILTpLSGMNIpfdiikgkgpvifdplrtaadvEKVREFIPeKSVPY 119 ::: ::::::: :::: :::::: :::::::: ::::: d1vjza_ 30 AQW-DFNFVRI--PMCH-LLWSDR----------------------GNPFIIRE-DFFEK 62 d1j93a_ 120 VGEALTILRKEVnnqAAVLGFVGapftLASYvvEGGSsknftkikrlafaepkvLHALLQ 179 :::::::::::: :::::::: :::: :::: :::::: d1vjza_ 63 IDRVIFWGEKYG---IHICISLH--raPGYSvnKEVE----------ektnlwkDETAQE 107 d1j93a_ 180 KFATSMAKYIRYQADS--gaQAVQIFDSWaTELS--pVDFEEfSLPYLKQIVDSVKLTHP 235 :::::::::::::::: ::::::::: :::: ::::: ::::::::::::::::: d1vjza_ 108 AFIHHWSFIARRYKGIssthLSFNLINEP-PFPDpqiMSVED-HNSLIKRTITEIRKIDP 165 d1j93a_ 236 NLPLILYA---SGSGglLERLPLtGVDVVSLDWT-------------------------- 266 :::::::: :::: :::::: :::::::::: d1vjza_ 166 ERLIIIDGlgyGNIP--VDDLTI-ENTVQSCRGYipfsvthykaewvdskdfpvpewpng 222 d1j93a_ 267 -------------vDMADGRrRLGP-NVAIQGnvDPGV----lfGSKEFITNRINDTVKK 308 :::::: :::: :::::: :::: :::::::::::::::: d1vjza_ 223 whfgeywnreklleHYLTWI-KLRQkGIEVFCgeMGAYnktphdVVLKWLEDLLEIFKTL 281 d1j93a_ 309 AgkgkHILNL----ghgIKVGT---------------PEENFAHFFEIakglry 343 : ::::: ::::: ::::::::::: d1vjza_ 282 N----IGFALwnfrgpfGILDSerkdveyeewyghklDRKMLELLRKY------ 325 FAST alignment (Normalized score: 5.05 Raw score:1686.00) d1j93a_ 1 TQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDL--------- 51 ::::::: d1vjza_ 1 --------------IPRWRGF------------------------------NLLEAFSIK 16 d1j93a_ 52 -----VVEISLQPWKVFRPDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVE 106 ::::::::: ::::::::::::::: d1vjza_ 17 STGNFKEEDFLWMA-QWDFNFVRIPMCHLL------------------------------ 45 d1j93a_ 107 KVREFIP-----------EKSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGG 155 :::::::::::::::: ::::::: d1vjza_ 46 -------WSDRGNPFIIREDFFEKIDRVIFWGEK---YGIHICI---------------- 79 d1j93a_ 156 SSKNFTKIKRLAFAE----------------------PKVLHALLQKFATSMAKYIRYQA 193 :::::::::::::::::: d1vjza_ 80 ---------------SLHRAPGYSVNKEVEEKTNLWKDETAQEAFIHHWSFIARR----- 119 d1j93a_ 194 DSGA--------QAVQIFDSWAT-----------ELSPVDFEEFSLPYLKQIVDSVKLTH 234 :::: ::::::::::::::::::::: : d1vjza_ 120 ----YKGISSTHLSFN-------LINEPPFPDPQIMSVEDHNSLIKRTITEIRKI----D 164 d1j93a_ 235 PNLPLILYASGSGGLLERLPLTGV-----------------DVVSLDWTV---------- 267 ::::::: :::::: d1vjza_ 165 PERLIII-----------------DGLGYGNIPVDDLTIENTVQSCR---GYIPFSVTHY 204 d1j93a_ 268 ----------------------------DMADGRRRLG------PNVAI--QGNVDPGVL 291 :::::::: ::::: ::::: :: d1vjza_ 205 KAEWVDSKDFPVPEWPNGWHFGEYWNREKLLEHYLT--WIKLRQKGIEVFCGEMGA--YN 260 d1j93a_ 292 FGSKEFITNRINDTVKKAGKG----KHILNLGHGIKVGTPEEN----------------- 330 ::::::::::::::::: ::::: d1vjza_ 261 KTPHDVVLKWLEDLLEI----FKTLNIGFA-------------LWNFRGPFGILDSERKD 303 d1j93a_ 331 -----------FAHFFEIAKGLRY-- 343 ::::::::: d1vjza_ 304 VEYEEWYGHKLDRKMLELLR----KY 325 TMalign alignment (TM-score: 0.58 Raw score:200.57) d1j93a_ 1 TQPLLLDAVRGKEVERPPVWLMRQAGRYMKSYQLLCEKYPLFRDRSENVDLVVEISLQPW 60 :: :::::: :::: : :: :::: :: : :::: d1vjza_ 1 ------IP--------RWRGFN-LLEA----F--------SI-KSTG---NF-K--EEDF 26 d1j93a_ 61 KVFR---PDGVILFSDILTPLSGMNIPFDIIKGKGPVIFDPLRTAADVEKVREFIPEKSV 117 :::: :::::::::::::: : : : ::::: : ::: d1vjza_ 27 LWMAQWDFNFVRIPMCHLLWS----D-----------R-G---------NPFII-R-EDF 59 d1j93a_ 118 PYVGEALTILRKEVNNQAAVLGFVGAPFTLASY-VVEGGSSKNFTKIKRLAFAEPKVLHA 176 :::::::::::::: :::::::::: ::::: ::::: : ::: :: : ::: d1vjza_ 60 FEKIDRVIFWGEKY--GIHICISLHR--APGYSV--NKEVE--E-KTN-LW---K--DET 104 d1j93a_ 177 LLQKFATSMAKYIRYQADSG--AQAVQIFDSWATELSPV-DFEEFSLPYLKQIVDSVKLT 233 :::::::::::::::::::: ::::::::: ::::::: :::::::::::::::::::: d1vjza_ 105 AQEAFIHHWSFIARRYKGISSTHLSFNLINE-PPFPDPQIMSVEDHNSLIKRTITEIRKI 163 d1j93a_ 234 HPNLPLILYASGSGGLLERLPLTGVDVVSLD-WTV------------------------- 267 ::::::::::::::::::::::::::::::: ::: d1vjza_ 164 DPERLIIIDGLGYGNIPVDDLTIENTVQSCRGYIPFSVTHYKAEWVDSKDFPVPEWPNGW 223 d1j93a_ 268 ----------DMADGRRR-LGP--NVAIQG-NVDPGV-LFGS--KEFITNRINDTVKKAG 310 :::::::: ::: :::::: :::::: :::: ::::::::::::: : d1vjza_ 224 HFGEYWNREKLLEHYLTWIKLRQKGIEVFCGEMGAYNKTPHDVVLKWLEDLLEIFKT--L 281 d1j93a_ 311 KGKHILNLGHG---IK----VGT--P-EE------NFAHFFEIAKGLRY 343 : ::::: :: :: ::: : :: :::::::::::: d1vjza_ 282 N--IGFAL-WNFRGPFGILDSERKDVEYEEWYGHKLDRKMLELLRKY-- 325 HHsearch alignment (Probability: 0.13 E-value:0.03) d1j93a_ 115 KSVPYVGEALTILRKEVNNQAAVLGFVGAPFTLASYVVEGGSSKNFTKIKRLAFAEPKVL 174 :::::::::::::::: ::::::::::::::::::: ::: ::::::::::: d1vjza_ 58 DFFEKIDRVIFWGEKY--GIHICISLHRAPGYSVNKE----VEE-----KTNLWKDETAQ 106 d1j93a_ 175 HALLQKFATSMAKYIRYQ-ADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLT 233 :::::::::::::::::: ::::::: :::::::::: ::::::::::::::::::::: d1vjza_ 107 EAFIHHWSFIARRYKGISSTHLSFNL--INEPPFPDPQ-IMSVEDHNSLIKRTITEIRKI 163 d1j93a_ 234 HPNLPLILYA 243 :::::::::: d1vjza_ 164 DPERLIIIDG 173