Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tf7a1 | Circadian clock protein KaiC | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | α/β |
| Hit | d1zina1 | Adenylate kinase | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | α/β |
Query <-- 1.007 --> IntermediateDALI alignment (Z-score: 2.3 Raw score:411.50) query 1 ----------------------------------------------------sLQLRLAL 8 ::::::: d1tf7a1 1 ehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqflyngiieFDEPGVF 60 query 9 NQID------------------------------------stvgDIAGNAEAILRWTRHS 32 :::: :::::::::::::::: d1tf7a1 61 VTFEetpqdiiknarsfgwdlaklvdegklfildaspdpegqevVGGFDLSALIERINYA 120 query 33 A-EQGAHLVAFPemALTGypvedlalrssFVEASRTALRELAARLAEEgfgELPVLVGYl 91 : :::::::::: :::: ::::::::::::::::::: :::::::: d1tf7a1 121 IqKYRARRVSID--SVTS-----vfqqydASSVVRRELFRLVARLKQI---GATTVMTT- 169 query 92 drsesaqpkygqpagAPRNaaavlhrgrVALTFAKHHLPNygvfdefryfvpgdtmpivr 151 :::: :::::::::::: d1tf7a1 170 ---------erieeyGPIA-rygveefvSDNVVILRNVLE---------------gerrr 204 query 152 lhgvdialaicedlwqdgGRVPaarsagaglllsvnaspyerdkddtrlelvrkRAQEAg 211 :::: ::::: d1tf7a1 205 rtleilklrgtshmkgeyPFTI--------------------------------TDHGI- 231 query 212 cttaylamiggqdelvfdgdsivvdrdgevvarapqfsegcvvldldlpaaeaePPTGvv 271 :::: d1tf7a1 232 ---------------------------------------------------nifPLGA-- 238 query 272 ddglridrlviseeplpayeaelaggyadrl 302 d1tf7a1 239 ---------------------------mrlt 242 FAST alignment (Normalized score: 2.60 Raw score:703.80) query 1 ----------------------------------------------------SLQLRLAL 8 :::::::: d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 60 query 9 NQIDST-----------------------------------------VGDIAGNAEAILR 27 : ::::::::::::: d1tf7a1 61 V-----TFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIE 115 query 28 WTRHSA-EQGAHLVAFPEMALTGYPVEDLALRSS----------FVEASRTALRELAARL 76 :::::: :::::::::: :::::::::::::::: d1tf7a1 116 RINYAIQKYRARRVSID-----------------SVTSVFQQYDASSVVRRELFRLVARL 158 query 77 AEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRG---------------RVA 121 ::: :::::::::: ::: d1tf7a1 159 KQI---GATTVMTTER--------------------------IEEYGPIARYGVEEFVSD 189 query 122 LTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAG 181 :::::::: d1tf7a1 190 NVVILRNV---------------------------------------------------- 197 query 182 LLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEV 241 d1tf7a1 198 ------------------------------------------------------------ 198 query 242 VARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADR 301 d1tf7a1 198 ------------------------------------------------------------ 198 query 302 L--------------------------------------------- 302 d1tf7a1 198 -LEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLT 242 TMalign alignment (TM-score: 0.33 Raw score:100.58) query 1 -----SLQL------------RL-----ALNQIDSTVGDIAGNAEAILRWTRHSAEQGAH 38 :::: :: ::::::: : :: :: d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTS-------G--TG--KT--------- 40 query 39 LVAF--------PEMALTGYPVEDLALRSSFVEASRTALRELAARLAEEGFGE------L 84 :::: : d1tf7a1 41 LFSIQFLYNGII----------------------------------------EFDEPGV- 59 query 85 PVL-VG-YLDRSESAQPKYGQPAGAPRNAAA-VLHRGRVALT--------FAKHHLPNYG 133 : : ::: ::::: :::::::::: :::::: d1tf7a1 60 --FV-TFEET----------------PQDIIKNARSFGWDLAKLVDEGKLFILDAS---- 96 query 134 VFDEFRYF-------VPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSV 186 ::::: :::::::::::::::::::::::: d1tf7a1 97 ---PDPEGQEVVGGF---------------------DLSALIERINYAIQKYRARRVSID 132 query 187 N-AS--P-YERDKD-DT-RLELVRKRAQEAGCTTAYLAMIGG-----QDELVFDGDSIVV 235 : :: : :::::: :: :::::::::: ::::::::::::: ::::::::: d1tf7a1 133 SVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPI----ARYGVEEFV 187 query 236 DRDGEVVARAP--QFSE--------GCVV-LDLDLPAAEAEPPTGVVDDGLRIDRLVISE 284 :::::: :: :::: :::: d1tf7a1 188 -----SDNVVILR--NVLEGERRRRTLEILKLRG-------------------------- 214 query 285 EPLPAYEAELAGG----------------------YADRL 302 :::::: d1tf7a1 215 -------TSHMKGEYPFTITDHGINIFPLGAMRLT----- 242 HHsearch alignment (Probability: 0.01 E-value:0.33) query 203 VRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGC 252 :::::::::::::::::::::::::::::::::::::::::::::::::: d1tf7a1 154 LVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERR 203
Intermediate <-- 0.678 --> HitDALI alignment (Z-score: 4.2 Raw score:478.10) d1tf7a1 1 ehqaiakmrtmiegfddishgglpigrstlVSGTSGTGKTLFSIQFLYNGIiefdepGVF 60 ::::::::::::::::::::: ::: d1zina1 1 --------------------------mnlvLMGLPGAGKGTQAEKIVAAYG------IPH 28 d1tf7a1 61 VTFEetpqdiiknarsfgwdlaklvdegklfilDASP--DPEGQE--------------v 104 :::: :::: :::::: d1zina1 29 ISTG-----------------------------DMFRaaMKEGTPlglqakqymdrgdlv 59 d1tf7a1 105 VGGFDLSALIERINYaiqKYRARRVSIDSVtsvfqqydassvVRRELFRLVARLKQIGAT 164 ::::::::::::::: :::::::::::: :::::::::::::::::: d1zina1 60 PDEVTIGIVRERLSK---DDCQNGFLLDGF----------prTVAQAEALETMLADIGRK 106 d1tf7a1 165 T-vmtteRIEEY--------------------gpiaRYGVEEFVS---DNVVILRnvleg 200 : ::::: ::::::::: ::::::: d1zina1 107 LdyvihiDVRQDvlmerltaddneatvanrlevnmkQMKPLVDFYeqkGYLRNIN----- 161 d1tf7a1 201 errrrtleilklrgtshmkgeypfTITDhGINI-fplgamrlt 242 :::: :::: d1zina1 162 ---------------------geqDMEK-VFADirellgglar 182 FAST alignment (Normalized score: 3.33 Raw score:699.70) d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 60 ::::::::::::::::::::::: d1zina1 1 --------------------------MNLVLMGLPGAGKGTQAEKIVAA----------- 23 d1tf7a1 61 VTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYA 120 d1zina1 24 ------------------------------------------------------------ 24 d1tf7a1 121 IQKYRA-RRVSIDSVTSVFQQ---------------------YDASSVVRRELFRLVARL 158 ::::: ::::::: ::::::::::::::: d1zina1 24 ------YGIPHI-STGDMFR-AAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERL--- 72 d1tf7a1 159 KQI-----GATTVMTTERIEEYGPI---ARYGVEEFV-----------SDNVVILRNVLE 199 :::::: ::::::::: :::::::::: d1zina1 73 ---SKDDCQNGFLL-----------DGFPRTVAQAEALETMLADIGRKLDYVIHIDVR-- 116 d1tf7a1 200 GERRRRTLEILKLRGTSHM----------------------------------------K 219 : d1zina1 117 -------------------QDVLMERLTADDNEATVANRLEVNMKQMKPLVDFYEQKGYL 157 d1tf7a1 220 GEYPFTITDHGINIFPLGAMRLT---------------------- 242 ::: d1zina1 158 RNI--------------------NGEQDMEKVFADIRELLGGLAR 182 TMalign alignment (TM-score: 0.41 Raw score:99.03) d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 60 :: :::::::: ::::::::::::::: ::: d1zina1 1 ------------------------MN-LVLMGLPG-AGKGTQAEKIVAAYG------IPH 28 d1tf7a1 61 VTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDAS-PDP-E----GQE---------VV 105 ::::: ::: ::: : ::: :: d1zina1 29 ISTGD----------------------------MFRAAMKEGTPLGLQAKQYMDRGDLVP 60 d1tf7a1 106 GGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQI-GAT 164 :::::::::::::: ::::::::::::: : ::::::::::::::: ::: d1zina1 61 DEVTIGIVRERLSK---DDCQNGFLLDGFP--R--------TVAQAEALETMLADIGRKL 107 d1tf7a1 165 T-VMTTERIEEY------------------GP-IAR-Y-GVEEFVS----DNVVILRNVL 198 : :::::::::: : :: : ::::::: :::::::: d1zina1 108 DYVIHIDVRQDVLMERLTADDNEATVANRL-EV-NMKQMKPLVDFYEQKGYLRNINGE-- 163 d1tf7a1 199 EGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIF-P-------LGAMRLT 242 : ::: :::::: : d1zina1 164 ------Q-------------------DME-KVFADIRELLGGLAR------- 182 HHsearch alignment (Probability: 0.96 E-value:0.00) d1tf7a1 28 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 65 :::::::::::::::::::::: :::::::::: d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA------YGIPHISTGD 33