Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tf7a1 | Circadian clock protein KaiC | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | α/β |
| Hit | d1p9ra_ | Extracellular secretion NTPase EpsE | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | α/β |
Query <-- 1.007 --> IntermediateDALI alignment (Z-score: 2.3 Raw score:411.50) query 1 ----------------------------------------------------sLQLRLAL 8 ::::::: d1tf7a1 1 ehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqflyngiieFDEPGVF 60 query 9 NQID------------------------------------stvgDIAGNAEAILRWTRHS 32 :::: :::::::::::::::: d1tf7a1 61 VTFEetpqdiiknarsfgwdlaklvdegklfildaspdpegqevVGGFDLSALIERINYA 120 query 33 A-EQGAHLVAFPemALTGypvedlalrssFVEASRTALRELAARLAEEgfgELPVLVGYl 91 : :::::::::: :::: ::::::::::::::::::: :::::::: d1tf7a1 121 IqKYRARRVSID--SVTS-----vfqqydASSVVRRELFRLVARLKQI---GATTVMTT- 169 query 92 drsesaqpkygqpagAPRNaaavlhrgrVALTFAKHHLPNygvfdefryfvpgdtmpivr 151 :::: :::::::::::: d1tf7a1 170 ---------erieeyGPIA-rygveefvSDNVVILRNVLE---------------gerrr 204 query 152 lhgvdialaicedlwqdgGRVPaarsagaglllsvnaspyerdkddtrlelvrkRAQEAg 211 :::: ::::: d1tf7a1 205 rtleilklrgtshmkgeyPFTI--------------------------------TDHGI- 231 query 212 cttaylamiggqdelvfdgdsivvdrdgevvarapqfsegcvvldldlpaaeaePPTGvv 271 :::: d1tf7a1 232 ---------------------------------------------------nifPLGA-- 238 query 272 ddglridrlviseeplpayeaelaggyadrl 302 d1tf7a1 239 ---------------------------mrlt 242 FAST alignment (Normalized score: 2.60 Raw score:703.80) query 1 ----------------------------------------------------SLQLRLAL 8 :::::::: d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 60 query 9 NQIDST-----------------------------------------VGDIAGNAEAILR 27 : ::::::::::::: d1tf7a1 61 V-----TFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIE 115 query 28 WTRHSA-EQGAHLVAFPEMALTGYPVEDLALRSS----------FVEASRTALRELAARL 76 :::::: :::::::::: :::::::::::::::: d1tf7a1 116 RINYAIQKYRARRVSID-----------------SVTSVFQQYDASSVVRRELFRLVARL 158 query 77 AEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRG---------------RVA 121 ::: :::::::::: ::: d1tf7a1 159 KQI---GATTVMTTER--------------------------IEEYGPIARYGVEEFVSD 189 query 122 LTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAG 181 :::::::: d1tf7a1 190 NVVILRNV---------------------------------------------------- 197 query 182 LLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEV 241 d1tf7a1 198 ------------------------------------------------------------ 198 query 242 VARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADR 301 d1tf7a1 198 ------------------------------------------------------------ 198 query 302 L--------------------------------------------- 302 d1tf7a1 198 -LEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLT 242 TMalign alignment (TM-score: 0.33 Raw score:100.58) query 1 -----SLQL------------RL-----ALNQIDSTVGDIAGNAEAILRWTRHSAEQGAH 38 :::: :: ::::::: : :: :: d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTS-------G--TG--KT--------- 40 query 39 LVAF--------PEMALTGYPVEDLALRSSFVEASRTALRELAARLAEEGFGE------L 84 :::: : d1tf7a1 41 LFSIQFLYNGII----------------------------------------EFDEPGV- 59 query 85 PVL-VG-YLDRSESAQPKYGQPAGAPRNAAA-VLHRGRVALT--------FAKHHLPNYG 133 : : ::: ::::: :::::::::: :::::: d1tf7a1 60 --FV-TFEET----------------PQDIIKNARSFGWDLAKLVDEGKLFILDAS---- 96 query 134 VFDEFRYF-------VPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSV 186 ::::: :::::::::::::::::::::::: d1tf7a1 97 ---PDPEGQEVVGGF---------------------DLSALIERINYAIQKYRARRVSID 132 query 187 N-AS--P-YERDKD-DT-RLELVRKRAQEAGCTTAYLAMIGG-----QDELVFDGDSIVV 235 : :: : :::::: :: :::::::::: ::::::::::::: ::::::::: d1tf7a1 133 SVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPI----ARYGVEEFV 187 query 236 DRDGEVVARAP--QFSE--------GCVV-LDLDLPAAEAEPPTGVVDDGLRIDRLVISE 284 :::::: :: :::: :::: d1tf7a1 188 -----SDNVVILR--NVLEGERRRRTLEILKLRG-------------------------- 214 query 285 EPLPAYEAELAGG----------------------YADRL 302 :::::: d1tf7a1 215 -------TSHMKGEYPFTITDHGINIFPLGAMRLT----- 242 HHsearch alignment (Probability: 0.01 E-value:0.33) query 203 VRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGC 252 :::::::::::::::::::::::::::::::::::::::::::::::::: d1tf7a1 154 LVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERR 203
Intermediate <-- 1.461 --> HitDALI alignment (Z-score: 8.4 Raw score:925.00) d1tf7a1 1 ------------------------------------------------------------ 1 d1p9ra_ 1 dffslaeeapiiklinamlgeaikegasdihietfektlsirfrvdgvlrevlapsrkls 60 d1tf7a1 1 -----------------------------------------------ehqaiakmrtMIE 13 ::: d1p9ra_ 61 sllvsrvkvmakldiaekrvpqdgrislavdvrvstmpsshgervvmrlldknatrlDLH 120 d1tf7a1 14 G------FDDISHGGLPI-GRSTLVSGTSGTGKTLFSIQFLYNGIIeFDEPGVFVTFEEt 66 : ::::::::::: ::::::::::::::::::::::::::: :::::::::::: d1p9ra_ 121 SlgmtahNHDNFRRLIKRpHGIILVTGPTGSGKSTTLYAGLQELNS-SERNILTVEDPI- 178 d1tf7a1 67 pqdIIKNarsfgwdlaklvdeGKLFILDASPDpegqevvggfDLSALIERINYAIqkyrA 126 :::: ::::::::::: ::::::::::::: : d1p9ra_ 179 ---EFDI--------------DGIGQTQVNPR-------vdmTFARGLRAILRQD----P 210 d1tf7a1 127 RRVSIDSVTsvfqqydassvvRRELFRLVARLKQIGATTVMTTERIeeygPIARYGV--- 183 ::::::::: ::::::::::::::::::::::::: ::::::: d1p9ra_ 211 DVVMVGEIR------------DLETAQIAVQASLTGHLVMSTLHTN--taVGAVTRLrdm 256 d1tf7a1 184 ------eefvSDNVVILRNVLE-------------------------------------G 200 :::::::::::: : d1p9ra_ 257 giepflisssLLGVLAQRLVRTlcpdckepyeadkeqrklfeplilyratgcpkcnhkgY 316 d1tf7a1 201 ERRRRTLEIlKLRG--------------------tshMKGEY-pftitdhginifplgam 239 ::::::::: :::: ::::: d1p9ra_ 317 RGRTGIHEL-LLVDdalqelihseageqamekhiratTPSIRddgldkvrqgitsleevm 375 d1tf7a1 240 rlt 242 d1p9ra_ 376 rgs 378 FAST alignment (Normalized score: 4.49 Raw score:1357.00) d1tf7a1 1 EHQAIAKMRTMIEGF--------------------------------------------- 15 d1p9ra_ 1 ---------------DFFSLAEEAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRV 45 d1tf7a1 16 ------------------------------------------------------------ 16 d1p9ra_ 46 DGVLREVLAPSRKLSSLLVSRVKVMAKLDIAEKRVPQDGRISLAVDVRVSTMPSSHGERV 105 d1tf7a1 16 -----------------------DDISHGG----LPIGRSTLVSGTSGTGKTLFSIQFLY 48 :::: :::::::::::::::::::::::::: d1p9ra_ 106 VMRLLDKNATRLDLHSLGMTAHNHDNF---RRLIKRPHGIILVTGPTGSGKSTTLYAGLQ 162 d1tf7a1 49 NGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDE------GKLFILDASPDPEGQ 102 :: :::::::::::: ::::::::: d1p9ra_ 163 EL-NSSERNILTVED------------------------PIEFDIDGIGQTQVN------ 191 d1tf7a1 103 EVVGGF-----DLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSV-VRRELFRLVA 156 ::::::::::: :::::::::: :::::::::: d1p9ra_ 192 ------PRVDMTFARGLRAILR----QDPDVVMVGE-------------IRDLETAQIAV 228 d1tf7a1 157 RLKQIGATTVMTTERIEEYGPIARYGVEEF----------------------VSDNVVIL 194 ::::::::::::::: :::::::: d1p9ra_ 229 QASLTGHLVMSTLHT---------------NTAVGAVTRLRDMGIEPFLISSSLLGVLAQ 273 d1tf7a1 195 RNVLE--------------------------------------GERRRRTLEILKLRGTS 216 :::: ::::::::::: d1p9ra_ 274 RLVR-TLCPDCKEPYEADKEQRKLFEPLILYRATGCPKCNHKGYRGRTGIHELL------ 326 d1tf7a1 217 HMKGEYPFTITDHGINIFPLGAMRLT---------------------------------- 242 d1p9ra_ 327 --------------------------LVDDALQELIHSEAGEQAMEKHIRATTPSIRDDG 360 d1tf7a1 243 ------------------ 243 d1p9ra_ 361 LDKVRQGITSLEEVMRGS 378 TMalign alignment (TM-score: 0.54 Raw score:131.76) d1tf7a1 1 ------------------------------------------------------------ 1 d1p9ra_ 1 DFFSLAEEAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLS 60 d1tf7a1 1 ---------------------------------------------------------EHQ 3 d1p9ra_ 61 SLLVSRVKVMAKLDIAEKRVPQDGRISLAVDVRVSTMPSSHGERVVMRLLDKNATRL--- 117 d1tf7a1 4 AIAKMRTMIE-----G-FDDISHGGL-PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE 56 ::: : ::::::::: ::::::::::::::::::::::::::::: ::: d1p9ra_ 118 -------DLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNS-SER 169 d1tf7a1 57 PGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIER 116 :::::: :: : ::: : : :::::::::: :: : ::: ::::: d1p9ra_ 170 NILTVE-DP-I-EFD---------I--D----GIGQTQVNPR--VD--M--TFA-RGLRA 204 d1tf7a1 117 INYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYG 176 :::: : :::::::::: : : ::: ::::::::::::::::::: : :: d1p9ra_ 205 ILRQ-D---PDVVMVGEIR--D--------L-ETA-QIAVQASLTGHLVMSTLHT-N-TA 246 d1tf7a1 177 PIARYGVEE-----F--V--SD-NVVILRNVL--------------------------EG 200 ::: ::::: : : :: ::::::::: :: d1p9ra_ 247 VGA-VTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQRKLFEPLILYRA 305 d1tf7a1 201 --------E-R--RRRTLEILKLRG-T----------------S-HMKG-E--YP-FT-- 225 : : :::::::::::: : : :::: : :: :: d1p9ra_ 306 TGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAMEKHIRATTPSIRDDGLDKVR 365 d1tf7a1 226 -------------ITDHGINIFPLGAMRLT 242 d1p9ra_ 366 QGITSLEEVMRGS----------------- 378 HHsearch alignment (Probability: 0.97 E-value:0.00) d1tf7a1 24 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAK 83 ::::::::::::::::::::::::: ::::: ::::::::::::::::::::::::: d1p9ra_ 138 RPHGIILVTGPTGSGKSTTLYAGLQ-ELNSS--ERNILTVEDPIEFDIDGIGQTQVNP-- 192 d1tf7a1 84 LVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDA 143 :::::::::::::::::::::::::::: d1p9ra_ 193 -------------------------RVDMTFARGLRAILRQDPDVVMVGEIRD------- 220 d1tf7a1 144 SSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIAR 180 :: :::::::::::::::::::::::::::::: d1p9ra_ 221 LE-----TAQIAVQASLTGHLVMSTLHTNTAVGAVTR 252