Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tf7a1 | Circadian clock protein KaiC | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | α/β |
| Hit | d1ihua1 | Arsenite-translocating ATPase ArsA | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | α/β |
Query <-- 1.007 --> IntermediateDALI alignment (Z-score: 2.3 Raw score:411.50) query 1 ----------------------------------------------------sLQLRLAL 8 ::::::: d1tf7a1 1 ehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqflyngiieFDEPGVF 60 query 9 NQID------------------------------------stvgDIAGNAEAILRWTRHS 32 :::: :::::::::::::::: d1tf7a1 61 VTFEetpqdiiknarsfgwdlaklvdegklfildaspdpegqevVGGFDLSALIERINYA 120 query 33 A-EQGAHLVAFPemALTGypvedlalrssFVEASRTALRELAARLAEEgfgELPVLVGYl 91 : :::::::::: :::: ::::::::::::::::::: :::::::: d1tf7a1 121 IqKYRARRVSID--SVTS-----vfqqydASSVVRRELFRLVARLKQI---GATTVMTT- 169 query 92 drsesaqpkygqpagAPRNaaavlhrgrVALTFAKHHLPNygvfdefryfvpgdtmpivr 151 :::: :::::::::::: d1tf7a1 170 ---------erieeyGPIA-rygveefvSDNVVILRNVLE---------------gerrr 204 query 152 lhgvdialaicedlwqdgGRVPaarsagaglllsvnaspyerdkddtrlelvrkRAQEAg 211 :::: ::::: d1tf7a1 205 rtleilklrgtshmkgeyPFTI--------------------------------TDHGI- 231 query 212 cttaylamiggqdelvfdgdsivvdrdgevvarapqfsegcvvldldlpaaeaePPTGvv 271 :::: d1tf7a1 232 ---------------------------------------------------nifPLGA-- 238 query 272 ddglridrlviseeplpayeaelaggyadrl 302 d1tf7a1 239 ---------------------------mrlt 242 FAST alignment (Normalized score: 2.60 Raw score:703.80) query 1 ----------------------------------------------------SLQLRLAL 8 :::::::: d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 60 query 9 NQIDST-----------------------------------------VGDIAGNAEAILR 27 : ::::::::::::: d1tf7a1 61 V-----TFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIE 115 query 28 WTRHSA-EQGAHLVAFPEMALTGYPVEDLALRSS----------FVEASRTALRELAARL 76 :::::: :::::::::: :::::::::::::::: d1tf7a1 116 RINYAIQKYRARRVSID-----------------SVTSVFQQYDASSVVRRELFRLVARL 158 query 77 AEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRG---------------RVA 121 ::: :::::::::: ::: d1tf7a1 159 KQI---GATTVMTTER--------------------------IEEYGPIARYGVEEFVSD 189 query 122 LTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAG 181 :::::::: d1tf7a1 190 NVVILRNV---------------------------------------------------- 197 query 182 LLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEV 241 d1tf7a1 198 ------------------------------------------------------------ 198 query 242 VARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADR 301 d1tf7a1 198 ------------------------------------------------------------ 198 query 302 L--------------------------------------------- 302 d1tf7a1 198 -LEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLT 242 TMalign alignment (TM-score: 0.33 Raw score:100.58) query 1 -----SLQL------------RL-----ALNQIDSTVGDIAGNAEAILRWTRHSAEQGAH 38 :::: :: ::::::: : :: :: d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTS-------G--TG--KT--------- 40 query 39 LVAF--------PEMALTGYPVEDLALRSSFVEASRTALRELAARLAEEGFGE------L 84 :::: : d1tf7a1 41 LFSIQFLYNGII----------------------------------------EFDEPGV- 59 query 85 PVL-VG-YLDRSESAQPKYGQPAGAPRNAAA-VLHRGRVALT--------FAKHHLPNYG 133 : : ::: ::::: :::::::::: :::::: d1tf7a1 60 --FV-TFEET----------------PQDIIKNARSFGWDLAKLVDEGKLFILDAS---- 96 query 134 VFDEFRYF-------VPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSV 186 ::::: :::::::::::::::::::::::: d1tf7a1 97 ---PDPEGQEVVGGF---------------------DLSALIERINYAIQKYRARRVSID 132 query 187 N-AS--P-YERDKD-DT-RLELVRKRAQEAGCTTAYLAMIGG-----QDELVFDGDSIVV 235 : :: : :::::: :: :::::::::: ::::::::::::: ::::::::: d1tf7a1 133 SVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPI----ARYGVEEFV 187 query 236 DRDGEVVARAP--QFSE--------GCVV-LDLDLPAAEAEPPTGVVDDGLRIDRLVISE 284 :::::: :: :::: :::: d1tf7a1 188 -----SDNVVILR--NVLEGERRRRTLEILKLRG-------------------------- 214 query 285 EPLPAYEAELAGG----------------------YADRL 302 :::::: d1tf7a1 215 -------TSHMKGEYPFTITDHGINIFPLGAMRLT----- 242 HHsearch alignment (Probability: 0.01 E-value:0.33) query 203 VRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGC 252 :::::::::::::::::::::::::::::::::::::::::::::::::: d1tf7a1 154 LVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERR 203
Intermediate <-- 1.592 --> HitDALI alignment (Z-score: 5.3 Raw score:635.50) d1tf7a1 1 ehqaiakmrtmiegfddishGGLPIGRS-tlVSGTSGTGKTLFSIQFLYNGIIeFDEPGV 59 :::::::: :::::::::::::::::::::: :::::: d1ihua1 1 -------------------mQFLQNIPPylfFTGKGGVGKTSISCATAIRLAE-QGKRVL 40 d1tf7a1 60 FVTFEETPqDIIKNAR----sfgwdLAKLvdeGKLFILDASPDP--EGQE---------- 103 :::::::: ::::::: :::: :::::::::::: :::: d1ihua1 41 LVSTDPAS-NVGQVFSqtigntiqaIASV---PGLSALEIDPQAaaQQYRarivdpikgv 96 d1tf7a1 104 --------------------vVGGFDLSALIERiNYAIQkyRARRVSIDSVTsvfqqyda 143 :::::::::::: ::::: ::::::::::: d1ihua1 97 lpddvvssineqlsgactteiAAFDEFTGLLTD-ASLLT--RFDHIIFDTAP-------t 146 d1tf7a1 144 SSVVRR-----------------------------elFRLV-ARLKqigattvmtteriE 173 :::::: :::: :::: : d1ihua1 147 GHTIRLlqlpgawssfiasclgpmaglekqreqyayaVEALsDPKR--trlvlvarlqkS 204 d1tf7a1 174 EYGPI-aRYGVEE--FVSDNVV-------------------ilrnvlegerrrrtleILK 211 ::::: :::::: ::::::: ::: d1ihua1 205 TLQEVarTHLELAaiGLKNQYLvingvlpkteaandtlaaaiwereqealanlpadlAGL 264 d1tf7a1 212 LrgtshmkgeyPFTIT----------dHGINIFPlgamrlt 242 : ::::: ::::::: d1ihua1 265 P--------tdTLFLQpvnmvgvsalsRLLSTQP------- 290 FAST alignment (Normalized score: 4.06 Raw score:1077.00) d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIG--------RSTLVSGTSGTGKTLFSIQFLYNGII 52 :::::::::::::::::::::::::: d1ihua1 1 --------------------------MQFLQNIPPYLFFTGKGGVGKTSISCATAIRLAE 34 d1tf7a1 53 EFDEPGVFVTFEETP----QDIIKNARSFGWDLAKLVDE---------------GKLFIL 93 ::::::::: :::::: :::::: d1ihua1 35 -QGKRVLLVS-----TDPASNVGQV--------------FSQTIGNTIQAIASVPGLSAL 74 d1tf7a1 94 DASPDPEGQEV-----------------------------------VGGFDLSALIERIN 118 : :::::::::::::: d1ihua1 75 E----------IDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFT 124 d1tf7a1 119 YAIQKY-------RARRVSIDSVTSVFQQYDASSV---VRRELFRLVARLKQIGA----- 163 ::: :::::::: :::::: d1ihua1 125 GLL---TDASLLTRFDHIIFD--------------TAPTGHTIR-----------LLQLP 156 d1tf7a1 164 -----------------------------------TTVMTTERIEEYGPIAR-------- 180 :::::::: d1ihua1 157 GAWSSFIASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVA---------RLQKSTLQ 207 d1tf7a1 181 -YGVEEFV-----SDNVVILRNVLEGERRRRTLEILKLRGTSHMK--------------- 219 ::::::: ::::::: d1ihua1 208 EVARTHLELAAIGLKNQYLV-------------------------INGVLPKTEAANDTL 242 d1tf7a1 220 ----------------------GEYP-FTITD----------HGINIFPLGAMRLT--- 242 :::: :::: :::: d1ihua1 243 AAAIWEREQEALANLPADLAGLPTDTLFLQP-VNMVGVSALSRLLS----------TQP 290 TMalign alignment (TM-score: 0.56 Raw score:135.47) d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 60 : : ::::::::::::::::::::::::::::::: :::::::: d1ihua1 1 --------------M---Q-FLQNIPPYLFFTGKGGVGKTSISCATAIRLA-EQGKRVLL 41 d1tf7a1 61 VTFEETPQDIIKNARSFGWDLA----KLVD-EGKLFILDASP-D-PEGQE---------- 103 ::::::: ::::::: ::: :::: ::::::::::: : ::::: d1ihua1 42 VSTDPAS-NVGQVFS----QTIGNTIQAIASVPGLSALEIDPQAAAQQYRARIVDPIKGV 96 d1tf7a1 104 -----------------V--VG-GFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDA 143 : :: :::::::::: ::::: ::::::::::: :: :: d1ihua1 97 LPDDVVSSINEQLSGACTTEIAAFDEFTGLLTD-ASLLT--RFDHIIFDTAP--TG--HT 149 d1tf7a1 144 SSVVRR-------------------------E-LFRLVARLKQIGATTVMTTER-I-EEY 175 :::::: : :::::::::: :::::::: : ::: d1ihua1 150 IRLLQLPGAWSSFIASCLGPMAGLEKQREQYAYAVEALSDPKR---TRLVLVARLQKSTL 206 d1tf7a1 176 GPIARY-GVEEF--VSDNVVILRNVL--------EGE-RRR--RT--L--E---I-LKLR 213 :::::: ::::: :::::::::::: ::: ::: :: : : : ::: d1ihua1 207 QEVARTHLELAAIGLKNQYLVINGVLPKTEAANDTLAAAIWEREQEALANLPADLAGLP- 265 d1tf7a1 214 GTSHMKGEYPFTI-T-D----HG--INIFPLGAMRLT 242 : :::::: : : :: :::::: d1ihua1 266 -----T-DTLFLQPVNMVGVSALSRLLSTQP------ 290 HHsearch alignment (Probability: 0.98 E-value:0.00) d1tf7a1 27 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 65 :::::::::::::::::::::::: :::::::::::::: d1ihua1 9 PYLFFTGKGGVGKTSISCATAIRL-AEQGKRVLLVSTDP 46