Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tf7a1 | Circadian clock protein KaiC | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | α/β |
| Hit | d1r0wa_ | Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | α/β |
Query <-- 1.007 --> IntermediateDALI alignment (Z-score: 2.3 Raw score:411.50) query 1 ----------------------------------------------------sLQLRLAL 8 ::::::: d1tf7a1 1 ehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqflyngiieFDEPGVF 60 query 9 NQID------------------------------------stvgDIAGNAEAILRWTRHS 32 :::: :::::::::::::::: d1tf7a1 61 VTFEetpqdiiknarsfgwdlaklvdegklfildaspdpegqevVGGFDLSALIERINYA 120 query 33 A-EQGAHLVAFPemALTGypvedlalrssFVEASRTALRELAARLAEEgfgELPVLVGYl 91 : :::::::::: :::: ::::::::::::::::::: :::::::: d1tf7a1 121 IqKYRARRVSID--SVTS-----vfqqydASSVVRRELFRLVARLKQI---GATTVMTT- 169 query 92 drsesaqpkygqpagAPRNaaavlhrgrVALTFAKHHLPNygvfdefryfvpgdtmpivr 151 :::: :::::::::::: d1tf7a1 170 ---------erieeyGPIA-rygveefvSDNVVILRNVLE---------------gerrr 204 query 152 lhgvdialaicedlwqdgGRVPaarsagaglllsvnaspyerdkddtrlelvrkRAQEAg 211 :::: ::::: d1tf7a1 205 rtleilklrgtshmkgeyPFTI--------------------------------TDHGI- 231 query 212 cttaylamiggqdelvfdgdsivvdrdgevvarapqfsegcvvldldlpaaeaePPTGvv 271 :::: d1tf7a1 232 ---------------------------------------------------nifPLGA-- 238 query 272 ddglridrlviseeplpayeaelaggyadrl 302 d1tf7a1 239 ---------------------------mrlt 242 FAST alignment (Normalized score: 2.60 Raw score:703.80) query 1 ----------------------------------------------------SLQLRLAL 8 :::::::: d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 60 query 9 NQIDST-----------------------------------------VGDIAGNAEAILR 27 : ::::::::::::: d1tf7a1 61 V-----TFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIE 115 query 28 WTRHSA-EQGAHLVAFPEMALTGYPVEDLALRSS----------FVEASRTALRELAARL 76 :::::: :::::::::: :::::::::::::::: d1tf7a1 116 RINYAIQKYRARRVSID-----------------SVTSVFQQYDASSVVRRELFRLVARL 158 query 77 AEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRG---------------RVA 121 ::: :::::::::: ::: d1tf7a1 159 KQI---GATTVMTTER--------------------------IEEYGPIARYGVEEFVSD 189 query 122 LTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAG 181 :::::::: d1tf7a1 190 NVVILRNV---------------------------------------------------- 197 query 182 LLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEV 241 d1tf7a1 198 ------------------------------------------------------------ 198 query 242 VARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADR 301 d1tf7a1 198 ------------------------------------------------------------ 198 query 302 L--------------------------------------------- 302 d1tf7a1 198 -LEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLT 242 TMalign alignment (TM-score: 0.33 Raw score:100.58) query 1 -----SLQL------------RL-----ALNQIDSTVGDIAGNAEAILRWTRHSAEQGAH 38 :::: :: ::::::: : :: :: d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTS-------G--TG--KT--------- 40 query 39 LVAF--------PEMALTGYPVEDLALRSSFVEASRTALRELAARLAEEGFGE------L 84 :::: : d1tf7a1 41 LFSIQFLYNGII----------------------------------------EFDEPGV- 59 query 85 PVL-VG-YLDRSESAQPKYGQPAGAPRNAAA-VLHRGRVALT--------FAKHHLPNYG 133 : : ::: ::::: :::::::::: :::::: d1tf7a1 60 --FV-TFEET----------------PQDIIKNARSFGWDLAKLVDEGKLFILDAS---- 96 query 134 VFDEFRYF-------VPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSV 186 ::::: :::::::::::::::::::::::: d1tf7a1 97 ---PDPEGQEVVGGF---------------------DLSALIERINYAIQKYRARRVSID 132 query 187 N-AS--P-YERDKD-DT-RLELVRKRAQEAGCTTAYLAMIGG-----QDELVFDGDSIVV 235 : :: : :::::: :: :::::::::: ::::::::::::: ::::::::: d1tf7a1 133 SVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPI----ARYGVEEFV 187 query 236 DRDGEVVARAP--QFSE--------GCVV-LDLDLPAAEAEPPTGVVDDGLRIDRLVISE 284 :::::: :: :::: :::: d1tf7a1 188 -----SDNVVILR--NVLEGERRRRTLEILKLRG-------------------------- 214 query 285 EPLPAYEAELAGG----------------------YADRL 302 :::::: d1tf7a1 215 -------TSHMKGEYPFTITDHGINIFPLGAMRLT----- 242 HHsearch alignment (Probability: 0.01 E-value:0.33) query 203 VRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGC 252 :::::::::::::::::::::::::::::::::::::::::::::::::: d1tf7a1 154 LVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERR 203
Intermediate <-- 2.153 --> HitDALI alignment (Z-score: 7.2 Raw score:804.00) d1tf7a1 1 ehqaiaKMRTmIEGF---------------------------ddishgGLPIGRSTLVSG 33 :::: :::: :::::::::::: d1r0wa_ 1 -----tGIIM-ENVTafweegfgellekvqsfshlclvgnpvlkninlNIEKGEMLAITG 54 d1tf7a1 34 TSGTGKTLFSIQFLY-----ngiiEFDEPGVFVTFEetpqdiiknarsfgwdlaklvdeg 88 ::::::::::::::: :::::::::::: d1r0wa_ 55 STGSGKTSLLMLILGeleasegiiKHSGRVSFCSQF------------------------ 90 d1tf7a1 89 klfildASPDP---------------------------------------------eGQE 103 ::::: ::: d1r0wa_ 91 ------SWIMPgtikeniifgvsydeyryksvvkacqlqqditkfaeqdntvlgeggVTL 144 d1tf7a1 104 VVGGFDLSALIErINYAIqkyrARRVSIDSVTSvfQQYDAssVVRRELFRLV-ARLKqiG 162 :::::::::::: ::::: ::::::::::: ::::: :::::::::: :::: : d1r0wa_ 145 SGGQRARISLAR-AVYKD----ADLYLLDSPFG--YLDVF--TEEQVFESCVcKLMA--N 193 d1tf7a1 163 ATTVMTTErieeygpiarYGVEEFVSDNVVILRNvlegerrrRTLEILKLrgtsHMKG-- 220 :::::::: :::::::::::::::: :::::::: :::: d1r0wa_ 194 KTRILVTS----------KMEHLRKADKILILHQ--------GSSYFYGTfselQSLRpd 235 d1tf7a1 221 ---------eypftitdhginifplgamrlt 242 d1r0wa_ 236 fssklmgydtfdqfteerrssiltetlrrfs 266 FAST alignment (Normalized score: 5.02 Raw score:1273.00) d1tf7a1 1 EHQAIAKMRTMIEGFDDISHG--------------------------------------G 22 :::: : d1r0wa_ 1 -------TGII----------MENVTAFWEEGFGELLEKVQSFSHLCLVGNPVLKNINLN 43 d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD--------------EPGVFVTFEETPQ 68 :::::::::::::::::::::::: ::::::: d1r0wa_ 44 IEKGEMLAITGSTGSGKTSLLMLI---------LGELEASEGIIKHSGRVSFCS------ 88 d1tf7a1 69 DIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGG--------------------- 107 d1r0wa_ 89 ---------------------------------------QFSWIMPGTIKENIIFGVSYD 109 d1tf7a1 108 -----------------------------------FDLSALIERINYAIQKYRARRVSID 132 :::::::::::::: :::::::::: d1r0wa_ 110 EYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAV-YKDADLYLLD 168 d1tf7a1 133 SVTSVFQQYD--ASSVVRRELFRLVARLKQ--IGATTVMTTERIEEYGPIARYGVEEFVS 188 :::: ::::::::::: :::: :::::::: :::::::::: d1r0wa_ 169 SPFG------YLDVFTEEQVFES---CVCKLMANKTRILV----------TSKMEHLRKA 209 d1tf7a1 189 DNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLT------ 242 :::::: d1r0wa_ 210 DKILIL------------------------------------------------HQGSSY 221 d1tf7a1 243 --------------------------------------------- 243 d1r0wa_ 222 FYGTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRRFS 266 TMalign alignment (TM-score: 0.48 Raw score:116.28) d1tf7a1 1 EHQAIAKMRTMIE------------------------------GFDDISHGGLPIGRSTL 30 :::::::: ::: : ::::::::: d1r0wa_ 1 -----TGIIMENVTAFWEEGFGELLEKVQSFSHLCLVGNPVLKNIN--L--NIEKGEMLA 51 d1tf7a1 31 VSGTSGTGKTLFSIQFLY--N-----GIIEFDEPGVFVTFEETP---------------- 67 :::::::::::::::::: : :::::::::::::::: d1r0wa_ 52 ITGSTGSGKTSLLMLILGELEASEGI--IKHSGRVSFCSQFSWIMPGTIKENIIFGVSYD 109 d1tf7a1 68 -----------------------------QDIIKNARSFGWDLAKLVDEGKLFILDASPD 98 :: d1r0wa_ 110 EYRYKSVVKACQLQQDITKFAEQDNTVLG-----------------------------EG 140 d1tf7a1 99 PEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLV-AR 157 :::::::::::: ::: :::::: ::::::::::: : ::: ::::::::::: :: d1r0wa_ 141 GVTLSGGQRARI-SLA-RAVYKD----ADLYLLDSPFG--Y-LDV-FTEEQVFESCVCKL 190 d1tf7a1 158 LKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTS- 216 :: :::::::: : :::::::::::::::: :::::::::: :: d1r0wa_ 191 MA--NKTRILVT---------S-KMEHLRKADKILILHQ-------GSSYFYGTFS-ELQ 230 d1tf7a1 217 HMKG---------------------------------EYPFTITDHGINIFPLGAMRLT 242 ::: d1r0wa_ 231 -SLRPDFSSKLMGYDTFDQFTEERRSSILTETLRRFS---------------------- 266 HHsearch alignment (Probability: 0.98 E-value:0.00) d1tf7a1 12 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE------ 65 :::::::: :::::::::::::::::::::::: ::: :::::::::::::::: d1r0wa_ 34 NPVLKNIN-LNIEKGEMLAITGSTGSGKTSLLM-LIL-GELEASEGIIKHSGRVSFCSQF 90 d1tf7a1 66 ---TPQDIIKNARS----FGWDLAKLVDEGKLFILDASPDPEG-----QEVVGGFDLSAL 113 ::::::::::: :::::::::::::: :::::::::: :::::::::::: d1r0wa_ 91 SWIMPGTIKENIIFGVSYDEYRYKSVVKACQL-QQDITKFAEQDNTVLGEGGVTLSGGQR 149 d1tf7a1 114 IERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIE 173 :::::::::::::::::::::::::: ::::::::::::::::::::::::::::: d1r0wa_ 150 ARISLARAVYKDADLYLLDSPFGYLD-----VFTEEQVFESCVCKLMANKTRILVTSKME 204 d1tf7a1 174 EYGPIARYGVEEFVSDNVVILRN 196 : :::::::::::: d1r0wa_ 205 H----------LRKADKILILHQ 217