Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tf7a1 | Circadian clock protein KaiC | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | α/β |
| Hit | d1sgwa_ | Putative ABC transporter PF0895 | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | α/β |
Query <-- 1.007 --> IntermediateDALI alignment (Z-score: 2.3 Raw score:411.50) query 1 ----------------------------------------------------sLQLRLAL 8 ::::::: d1tf7a1 1 ehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqflyngiieFDEPGVF 60 query 9 NQID------------------------------------stvgDIAGNAEAILRWTRHS 32 :::: :::::::::::::::: d1tf7a1 61 VTFEetpqdiiknarsfgwdlaklvdegklfildaspdpegqevVGGFDLSALIERINYA 120 query 33 A-EQGAHLVAFPemALTGypvedlalrssFVEASRTALRELAARLAEEgfgELPVLVGYl 91 : :::::::::: :::: ::::::::::::::::::: :::::::: d1tf7a1 121 IqKYRARRVSID--SVTS-----vfqqydASSVVRRELFRLVARLKQI---GATTVMTT- 169 query 92 drsesaqpkygqpagAPRNaaavlhrgrVALTFAKHHLPNygvfdefryfvpgdtmpivr 151 :::: :::::::::::: d1tf7a1 170 ---------erieeyGPIA-rygveefvSDNVVILRNVLE---------------gerrr 204 query 152 lhgvdialaicedlwqdgGRVPaarsagaglllsvnaspyerdkddtrlelvrkRAQEAg 211 :::: ::::: d1tf7a1 205 rtleilklrgtshmkgeyPFTI--------------------------------TDHGI- 231 query 212 cttaylamiggqdelvfdgdsivvdrdgevvarapqfsegcvvldldlpaaeaePPTGvv 271 :::: d1tf7a1 232 ---------------------------------------------------nifPLGA-- 238 query 272 ddglridrlviseeplpayeaelaggyadrl 302 d1tf7a1 239 ---------------------------mrlt 242 FAST alignment (Normalized score: 2.60 Raw score:703.80) query 1 ----------------------------------------------------SLQLRLAL 8 :::::::: d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 60 query 9 NQIDST-----------------------------------------VGDIAGNAEAILR 27 : ::::::::::::: d1tf7a1 61 V-----TFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIE 115 query 28 WTRHSA-EQGAHLVAFPEMALTGYPVEDLALRSS----------FVEASRTALRELAARL 76 :::::: :::::::::: :::::::::::::::: d1tf7a1 116 RINYAIQKYRARRVSID-----------------SVTSVFQQYDASSVVRRELFRLVARL 158 query 77 AEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRG---------------RVA 121 ::: :::::::::: ::: d1tf7a1 159 KQI---GATTVMTTER--------------------------IEEYGPIARYGVEEFVSD 189 query 122 LTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAG 181 :::::::: d1tf7a1 190 NVVILRNV---------------------------------------------------- 197 query 182 LLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEV 241 d1tf7a1 198 ------------------------------------------------------------ 198 query 242 VARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADR 301 d1tf7a1 198 ------------------------------------------------------------ 198 query 302 L--------------------------------------------- 302 d1tf7a1 198 -LEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLT 242 TMalign alignment (TM-score: 0.33 Raw score:100.58) query 1 -----SLQL------------RL-----ALNQIDSTVGDIAGNAEAILRWTRHSAEQGAH 38 :::: :: ::::::: : :: :: d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTS-------G--TG--KT--------- 40 query 39 LVAF--------PEMALTGYPVEDLALRSSFVEASRTALRELAARLAEEGFGE------L 84 :::: : d1tf7a1 41 LFSIQFLYNGII----------------------------------------EFDEPGV- 59 query 85 PVL-VG-YLDRSESAQPKYGQPAGAPRNAAA-VLHRGRVALT--------FAKHHLPNYG 133 : : ::: ::::: :::::::::: :::::: d1tf7a1 60 --FV-TFEET----------------PQDIIKNARSFGWDLAKLVDEGKLFILDAS---- 96 query 134 VFDEFRYF-------VPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSV 186 ::::: :::::::::::::::::::::::: d1tf7a1 97 ---PDPEGQEVVGGF---------------------DLSALIERINYAIQKYRARRVSID 132 query 187 N-AS--P-YERDKD-DT-RLELVRKRAQEAGCTTAYLAMIGG-----QDELVFDGDSIVV 235 : :: : :::::: :: :::::::::: ::::::::::::: ::::::::: d1tf7a1 133 SVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPI----ARYGVEEFV 187 query 236 DRDGEVVARAP--QFSE--------GCVV-LDLDLPAAEAEPPTGVVDDGLRIDRLVISE 284 :::::: :: :::: :::: d1tf7a1 188 -----SDNVVILR--NVLEGERRRRTLEILKLRG-------------------------- 214 query 285 EPLPAYEAELAGG----------------------YADRL 302 :::::: d1tf7a1 215 -------TSHMKGEYPFTITDHGINIFPLGAMRLT----- 242 HHsearch alignment (Probability: 0.01 E-value:0.33) query 203 VRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGC 252 :::::::::::::::::::::::::::::::::::::::::::::::::: d1tf7a1 154 LVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERR 203
Intermediate <-- 2.277 --> HitDALI alignment (Z-score: 8.6 Raw score:828.70) d1tf7a1 1 ehqaiAKMRTM----------iEGFDdishGGLPIGRSTLVSGTSGTGKTLFSIQFLY-- 48 :::::: :::: :::::::::::::::::::::::::::: d1sgwa_ 1 -----SKLEIRdlsvgydkpvlERIT----MTIEKGNVVNFHGPNGIGKTTLLKTISTyl 51 d1tf7a1 49 -----------ngIIEFDEPGVFVTFEetpqdiiknarsfgwdlaklvdegklfildASP 97 :::::::::::::: ::: d1sgwa_ 52 kplkgeiiyngvpITKVKGKIFFLPEE------------------------------IIV 81 d1tf7a1 98 DPE---------------------------------------GQEVVGGFDLsALIERIN 118 ::: :::::::::: ::::::: d1sgwa_ 82 PRKisvedylkavaslygvkvnkneimdalesvevldlkkklGELSQGTIRR-VQLASTL 140 d1tf7a1 119 YAiqkyRARRVSIDSVTSVFqqydASSVVRRELFRLVARLKQiGATTVMTTERieeygpi 178 :: :::::::::::::: :::::::::::::::::: :::::::::: d1sgwa_ 141 LV----NAEIYVLDDPVVAI----DEDSKHKVLKSILEILKE-KGIVIISSRE------- 184 d1tf7a1 179 arygveEFVSDNVVILRnvlegerrrrtleilklrgtshmkgeYPFTitdhginifplga 238 ::::::::::: :::: d1sgwa_ 185 -----eLSYCDVNENLH--------------------------KYST------------- 200 d1tf7a1 239 mrlt 242 d1sgwa_ 201 ---- 201 FAST alignment (Normalized score: 6.24 Raw score:1372.00) d1tf7a1 1 EHQAIAKMRTMIEGFDDISHG-----------------GLPIGRSTLVSGTSGTGKTLFS 43 ::::: :::::::::::::::::::::: d1sgwa_ 1 -----SKLEI-----------RDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLL 44 d1tf7a1 44 IQFLYNGIIEFDE-----------------------PGVFVTFEETPQDIIKNARSFGWD 80 ::: :::::: d1sgwa_ 45 KTI----------STYLKPLKGEIIYNGVPITKVKGKIFFLP------------------ 76 d1tf7a1 81 LAKLVDEGKLFILDA---SPDPEGQ----------------------------------- 102 ::::: d1sgwa_ 77 ---------------EEIIVPRK--ISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL 119 d1tf7a1 103 ------EVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ--YDASSVVRRELFRL 154 :::::: :::::::::: ::::::::::: :::::::::::::: d1sgwa_ 120 KKKLGELSQGTI-RRVQLASTLL----VNAEIYVLDDP------VVAIDEDSKHKVLKSI 168 d1tf7a1 155 VARLKQIGATTVMTTERIEEYGPIARYGVE---EFVSDNVVILRNVLEGERRRRTLEILK 211 :::::: :::::::: ::::::::: d1sgwa_ 169 LEILKE-KGIVIISS---------------REELSYCDVNEN------------------ 194 d1tf7a1 212 LRGTSHMKGEYPFTITDHGINIFPLGAMRLT------ 242 d1sgwa_ 195 -------------------------------LHKYST 200 TMalign alignment (TM-score: 0.47 Raw score:113.93) d1tf7a1 1 EHQAIAKMRTMIE----------GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLY-- 48 :::::::: ::: : ::::::::::::::::::::::::::: d1sgwa_ 1 -----SKLEIRDLSVGYDKPVLERIT--M--TIEKGNVVNFHGPNGIGKTTLLKTISTYL 51 d1tf7a1 49 ------NGI--IEF-DE--PGVFVTFEETP---------------QDIIKNARSFGWDLA 82 ::: ::: :: ::::::::::: d1sgwa_ 52 KPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVAS--------------- 96 d1tf7a1 83 KLVDEGK-----------------------LFILDASPDPEGQEVVGGFDLSALIERINY 119 :: ::::::::: ::: :::::::: d1sgwa_ 97 -----LYGVKVNKNEIMDALESVEVLDLKK--------KLGELSQGT-IRR-VQLASTLL 141 d1tf7a1 120 AIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIA 179 : : ::::::::::::: ::: ::::::::::::::: ::::::::: : d1sgwa_ 142 V-N---AEIYVLDDPVVAI--DED--SKHKVLKSILEILKE-KGIVIISSR--------E 184 d1tf7a1 180 RYGVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAM 239 :::::::::::: :: :: d1sgwa_ 185 ----ELSYCDVNENLH----------KY----------------ST-------------- 200 d1tf7a1 240 RLT 242 d1sgwa_ 201 --- 201 HHsearch alignment (Probability: 0.98 E-value:0.00) d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE----------------- 64 ::::::::::::::::::::::: :::: :::::::::::::: d1sgwa_ 23 TIEKGNVVNFHGPNGIGKTTLLK-TIST-YLKPLKGEIIYNGVPITKVKGKIFFLPEEII 80 d1tf7a1 65 ----ETPQDIIKNARSF-GWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINY 119 ::::::::::::: ::::::::: :::::::::::::::::::::::::::::: d1sgwa_ 81 VPRKISVEDYLKAVASLYGVKVNKNEI---MDALESVEVLDLKKKLGELSQGTIRRVQLA 137 d1tf7a1 120 AIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIE 173 ::::::::::::::::::: ::::::::::::::::::::::::::::::: d1sgwa_ 138 STLLVNAEIYVLDDPVVAI----DEDSKHKVLKSILEILKEKGIVIISSREELS 187