Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tf7a1 | Circadian clock protein KaiC | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | α/β |
| Hit | d1l7vc_ | ABC transporter involved in vitamin B12 uptake, BtuD | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | α/β |
Query <-- 1.007 --> IntermediateDALI alignment (Z-score: 2.3 Raw score:411.50) query 1 ----------------------------------------------------sLQLRLAL 8 ::::::: d1tf7a1 1 ehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqflyngiieFDEPGVF 60 query 9 NQID------------------------------------stvgDIAGNAEAILRWTRHS 32 :::: :::::::::::::::: d1tf7a1 61 VTFEetpqdiiknarsfgwdlaklvdegklfildaspdpegqevVGGFDLSALIERINYA 120 query 33 A-EQGAHLVAFPemALTGypvedlalrssFVEASRTALRELAARLAEEgfgELPVLVGYl 91 : :::::::::: :::: ::::::::::::::::::: :::::::: d1tf7a1 121 IqKYRARRVSID--SVTS-----vfqqydASSVVRRELFRLVARLKQI---GATTVMTT- 169 query 92 drsesaqpkygqpagAPRNaaavlhrgrVALTFAKHHLPNygvfdefryfvpgdtmpivr 151 :::: :::::::::::: d1tf7a1 170 ---------erieeyGPIA-rygveefvSDNVVILRNVLE---------------gerrr 204 query 152 lhgvdialaicedlwqdgGRVPaarsagaglllsvnaspyerdkddtrlelvrkRAQEAg 211 :::: ::::: d1tf7a1 205 rtleilklrgtshmkgeyPFTI--------------------------------TDHGI- 231 query 212 cttaylamiggqdelvfdgdsivvdrdgevvarapqfsegcvvldldlpaaeaePPTGvv 271 :::: d1tf7a1 232 ---------------------------------------------------nifPLGA-- 238 query 272 ddglridrlviseeplpayeaelaggyadrl 302 d1tf7a1 239 ---------------------------mrlt 242 FAST alignment (Normalized score: 2.60 Raw score:703.80) query 1 ----------------------------------------------------SLQLRLAL 8 :::::::: d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 60 query 9 NQIDST-----------------------------------------VGDIAGNAEAILR 27 : ::::::::::::: d1tf7a1 61 V-----TFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIE 115 query 28 WTRHSA-EQGAHLVAFPEMALTGYPVEDLALRSS----------FVEASRTALRELAARL 76 :::::: :::::::::: :::::::::::::::: d1tf7a1 116 RINYAIQKYRARRVSID-----------------SVTSVFQQYDASSVVRRELFRLVARL 158 query 77 AEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRG---------------RVA 121 ::: :::::::::: ::: d1tf7a1 159 KQI---GATTVMTTER--------------------------IEEYGPIARYGVEEFVSD 189 query 122 LTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAG 181 :::::::: d1tf7a1 190 NVVILRNV---------------------------------------------------- 197 query 182 LLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEV 241 d1tf7a1 198 ------------------------------------------------------------ 198 query 242 VARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADR 301 d1tf7a1 198 ------------------------------------------------------------ 198 query 302 L--------------------------------------------- 302 d1tf7a1 198 -LEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLT 242 TMalign alignment (TM-score: 0.33 Raw score:100.58) query 1 -----SLQL------------RL-----ALNQIDSTVGDIAGNAEAILRWTRHSAEQGAH 38 :::: :: ::::::: : :: :: d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTS-------G--TG--KT--------- 40 query 39 LVAF--------PEMALTGYPVEDLALRSSFVEASRTALRELAARLAEEGFGE------L 84 :::: : d1tf7a1 41 LFSIQFLYNGII----------------------------------------EFDEPGV- 59 query 85 PVL-VG-YLDRSESAQPKYGQPAGAPRNAAA-VLHRGRVALT--------FAKHHLPNYG 133 : : ::: ::::: :::::::::: :::::: d1tf7a1 60 --FV-TFEET----------------PQDIIKNARSFGWDLAKLVDEGKLFILDAS---- 96 query 134 VFDEFRYF-------VPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSV 186 ::::: :::::::::::::::::::::::: d1tf7a1 97 ---PDPEGQEVVGGF---------------------DLSALIERINYAIQKYRARRVSID 132 query 187 N-AS--P-YERDKD-DT-RLELVRKRAQEAGCTTAYLAMIGG-----QDELVFDGDSIVV 235 : :: : :::::: :: :::::::::: ::::::::::::: ::::::::: d1tf7a1 133 SVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPI----ARYGVEEFV 187 query 236 DRDGEVVARAP--QFSE--------GCVV-LDLDLPAAEAEPPTGVVDDGLRIDRLVISE 284 :::::: :: :::: :::: d1tf7a1 188 -----SDNVVILR--NVLEGERRRRTLEILKLRG-------------------------- 214 query 285 EPLPAYEAELAGG----------------------YADRL 302 :::::: d1tf7a1 215 -------TSHMKGEYPFTITDHGINIFPLGAMRLT----- 242 HHsearch alignment (Probability: 0.01 E-value:0.33) query 203 VRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGC 252 :::::::::::::::::::::::::::::::::::::::::::::::::: d1tf7a1 154 LVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLEGERR 203
Intermediate <-- 2.372 --> HitDALI alignment (Z-score: 8.4 Raw score:859.90) d1tf7a1 1 ehqaiAKMRTmIEGF-----ddishgGLPIGRSTLVSGTSGTGKTLFSIQFLY------- 48 ::::: :::: ::::::::::::::::::::::::::: d1l7vc_ 1 -----SIVMQ-LQDVaestrlgplsgEVRAGEILHLVGPNGAGKSTLLARMAGmtsgkgs 54 d1tf7a1 49 ----ngiIEFD------ePGVFVTFEetpqdiiknarsfgwdlaklvdegklfildaSPD 98 :::: :::::::: ::: d1l7vc_ 55 iqfagqpLEAWsatklalHRAYLSQQ-------------------------------QTP 83 d1tf7a1 99 PE--------------------------------------GQEVVGGFDLsALIERINYA 120 :: :::::::::: ::::::::: d1l7vc_ 84 PFatpvwhyltlhqhdktrtellndvagalalddklgrstNQLSGGEWQR-VRLAAVVLQ 142 d1tf7a1 121 IQ---KYRARRVSIDSVTSVFqqydasSVVRRELFRLVARLKQIGATTVMTTerieeygp 177 :: :::::::::::::::: ::::::::::::::::::::::::: d1l7vc_ 143 ITpqaNPAGQLLLLDEPMNSL-----dVAQQSALDKILSALCQQGLAIVMSS-------- 189 d1tf7a1 178 iARYGVEEFVSDNVVILRNvlegerrrRTLEILKLrgtshmkgeypftitdhginifplg 237 :::::::::::::::::: :::::::: d1l7vc_ 190 -HDLNHTLRHAHRAWLLKG--------GKMLASGR--------------reevltppnla 226 d1tf7a1 238 amrlt 242 d1l7vc_ 227 qaygm 231 FAST alignment (Normalized score: 5.54 Raw score:1311.00) d1tf7a1 1 EHQAIAKM--RTMIEGFDDISHG-------------GLPIGRSTLVSGTSGTGKTLFSIQ 45 ::::: :::::::::::::::::::::::: d1l7vc_ 1 --------SIVMQLQ--------DVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLAR 44 d1tf7a1 46 FLYNG----------------IIEFDE-------PGVFVTFEETPQDIIKNARSFGWDLA 82 : :::: ::::: d1l7vc_ 45 M----AGMTSGKGSIQFAGQPLEAW--SATKLALHRAYL--------------------- 77 d1tf7a1 83 KLVDEGKLFILDA----SPDPEGQEVVG-------------------------------- 106 ::::: d1l7vc_ 78 -------------SQQQTPPFA------TPVWHYLTLHQHDKTRTELLNDVAGALALDDK 118 d1tf7a1 107 ----------GFDLSALIERINYA--IQKY-RARRVSIDSVTSVFQ-QYDASSVVRRELF 152 :::::::::::::: :::: :::::::::: ::::::::::: : d1l7vc_ 119 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEP-----MNSLDVAQQSAL-D 172 d1tf7a1 153 RLVARLKQIGATTVMTTERIEEYGPIAR--YGVEEFVSDNVVILRNVLEGERRRR-TLEI 209 ::::::::::::::::: :::::::::::::: :::: d1l7vc_ 173 KILSALCQQGLAIVMSS-----------HDLNHTLRHAHRAWLL-----------KGGKM 210 d1tf7a1 210 LKLRGTSHMKGEYPFTITDHGINIFPLGAMRLT------------------- 242 :: d1l7vc_ 211 LA-------------------------------SGRREEVLTPPNLAQAYGM 231 TMalign alignment (TM-score: 0.41 Raw score:98.78) d1tf7a1 1 EHQAIAKMRTMI----------EGFDDISHGGLPIGRSTLVSGTSG-TGKTLFSIQFLY- 48 ::::::: :::: ::: :::::::::: :::::::::::: d1l7vc_ 1 -----SIVMQLQDVAESTRLGPLSGE-----VRA--GEILHLVGPNGAGKSTLLARMAGM 48 d1tf7a1 49 ------NGI-IEFDE--P----GV---FVTF-EETPQDIIKNARSFGWDLAKLVDEGKLF 91 ::: :::: : :: :::: :: d1l7vc_ 49 TSGKGSIQFA-GQPLEAWSATKLALHRAYLSQQQ-------------------------- 81 d1tf7a1 92 ILDASPDPEGQEVVGGFDLSALIERI----------------------NYAIQKYRARRV 129 ::: ::: ::::::::::::: d1l7vc_ 82 ----TPP--FAT-PVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS------------ 122 d1tf7a1 130 SIDSVTSVFQQY--DASSVVRRELFRLVARLKQIGATTVMT--TERIEEYGPIARYGVEE 185 ::::: ::::::::::::::::::::::::::: ::::: :: ::::::: d1l7vc_ 123 -------TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSL--DV-AQQSALD 172 d1tf7a1 186 FVS--DN-----V-VILRNV-LEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPL 236 ::: :: : :::::: :::::: :: ::::::: :::::: d1l7vc_ 173 KILSALCQQGLAIVMSSHDLN--------HTLRHA-----HR--AWLLKGG---KMLASG 214 d1tf7a1 237 ---GA------------MRLT 242 :: d1l7vc_ 215 RREEVLTPPNLAQAYGM---- 231 HHsearch alignment (Probability: 0.98 E-value:0.00) d1tf7a1 21 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE---TPQDIIKNARSF 77 :::::::::::::::::::::::: ::: :::::::::::::::: :::::::::::: d1l7vc_ 20 GEVRAGEILHLVGPNGAGKSTLLA-RMA-GMTSGKGSIQFAGQPLEAWSATKLALHRAYL 77 d1tf7a1 78 GWDLAKLVDE---GKLFI--LDASPDPEGQEVV-------------GGFDLSALI-ERIN 118 :::::::::: ::::: ::::::::::::: ::::::::: :::: d1l7vc_ 78 SQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLA 137 d1tf7a1 119 YAIQK------YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERI 172 ::::: :::::::::::::: :::::::::::::::::::::::::::::: d1l7vc_ 138 AVVLQITPQANPAGQLLLLDEPMNS-----LDVAQQSALDKILSALCQQGLAIVMSSHDL 192 d1tf7a1 173 EEYGPIARYGVEEFVSDNVVILRN 196 :: ::::::::::::: d1l7vc_ 193 NH---------TLRHAHRAWLLKG 207