Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ii7a_ | Mre11 | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
| Hit | d1ijba_ | von Willebrand factor A1 domain, vWA1 | vWA-like | vWA-like | α/β |
Query <-- 1.019 --> IntermediateDALI alignment (Z-score: 7.3 Raw score:827.30) query 1 slqLRLALNQIDSTVGD-------IAGNAEAILRWTRHSAEQGAHLVAFPEMAlTGYPVe 53 :::::::::::::: ::::::::::::::::::::::::::::: ::::: d1ii7a_ 1 ---MKFAHLADIHLGYEqfhkpqrEEEFAEAFKNALEIAVQENVDFILIAGDL-FHSSR- 55 query 54 dlalrssFVEASRTALRELAARLAeegFGELPVLvgyldrsesaqpkygqpagAPRNAAa 113 ::::::::::::::::: ::::::: :::::: d1ii7a_ 56 -------PSPGTLKKAIALLQIPK---EHSIPVF---------aiegnhdrtqRGPSVLn 96 query 114 vlhrgRVALTfakhhlpnygvfdefryfvPGDT-----------------MPIVRLHGVD 156 ::::: :::: :::::::::: d1ii7a_ 97 lledfGLVYV-----------------igMRKEkveneyltserlgngeyLVKGVYKDLE 139 query 157 IALAICE----dlwQDGGRVPAARsagaGLLLSV---naspyERDKDDTRleLVRKRAqE 209 ::::::: :::::::::: :::::: :::::::: :::::: : d1ii7a_ 140 IHGMKYMssawfeaNKEILKRLFRptdnAILMLHqgvrevseARGEDYFE--IGLGDL-P 196 query 210 AGC-TTAYLAmiggqdelvFDGDsivvdrDGEVVARA----------------------- 245 ::: :::::: :::: :::::::: d1ii7a_ 197 EGYlYYALGH--------iHKRY---etsYSGSPVVYpgslerwdfgdyevryewdgikf 245 query 246 ---pqFSEGCVVLDLDlpaaeaepptgvvddglridrlviseeplpayeaeLAGG----- 297 ::::::::::: :::: d1ii7a_ 246 kerygVNKGFYIVEDF-----------------------------------KPRFveikv 270 query 298 ----------------------------------------------------------ya 299 d1ii7a_ 271 rpfidvkikgseeeirkaikrliplipknayvrlnigwrkpfdlteikellnveylkidt 330 query 300 drl 302 d1ii7a_ 331 wri 333 FAST alignment (Normalized score: 3.97 Raw score:1260.00) query 1 SLQLRLALNQIDSTVG--------------DIAGNAEAILRWTRHSAEQGAHLVAFPEMA 46 :::::: :::::::::::::::::::::::::::::: d1ii7a_ 1 ---MKFAHL-------ADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDL 50 query 47 LTGYPVEDLALRSSF------VEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPK 100 ::::::::::::::::: ::::::: d1ii7a_ 51 ---------------FHSSRPSPGTLKKAIALLQIPKE---HSIPVFA------------ 80 query 101 YGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPG---------------- 144 d1ii7a_ 81 --------------------------------------------IEGNHDRTQRGPSVLN 96 query 145 -------------------------------DTMPIVRLHGVDIALAICEDLW------- 166 ::::::::::::::::: d1ii7a_ 97 LLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMK-----YMSSAWF 151 query 167 --QDGGRVPAARSAGA------GLLLSVNASPYERDKDDT--------------RLELVR 204 :::::::: ::::::::: :::: d1ii7a_ 152 EANKEILKRL------FRPTDNAILMLHQGV---------REVSEARGEDYFEIGLGD-- 194 query 205 KRAQEA----GCTTAYLAMIGGQDELVFD---GDSIVVDRDGEVVARAPQ---------- 247 :::::: :::::: d1ii7a_ 195 ------LPEGYLYYAL-------------GHIHKRYET------------SYSGSPVVYP 223 query 248 ---------------------------FSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRL 280 :::::::: d1ii7a_ 224 GSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIV------------------------- 258 query 281 VISEEPLPAYEAELAGGYADRL-------------------------------------- 302 d1ii7a_ 259 ----------------------EDFKPRFVEIKVRPFIDVKIKGSEEEIRKAIKRLIPLI 296 query 303 ------------------------------------- 303 d1ii7a_ 297 PKNAYVRLNIGWRKPFDLTEIKELLNVEYLKIDTWRI 333 TMalign alignment (TM-score: 0.49 Raw score:148.88) query 1 SLQLRLALNQIDSTVGD-------IAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVE 53 :::::::::::::: ::::::::::::::::::::::::::::: :: : d1ii7a_ 1 ---MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDL-FH--S- 53 query 54 DLALRSSFVEASRTALRELAARLAEEGFGELPVLVGY---LDRSESAQPKYGQPAGAPRN 110 : :::::::::::::::::: :: :::::::: ::: ::::: d1ii7a_ 54 --S---RPSPGTLKKAIALLQIPK--EH-SIPVFAIEGNHDRT------------QRGPS 93 query 111 AAAVLHRGRVALTFAKH---------------HLPNYGVFDEFRYFVPGDTMPIVRLHGV 155 ::::::::::::::::: ::::::::::::: d1ii7a_ 94 VLNLLEDFGLVYVIGMRKEKVENEYLTSERLG---------------NGEYLVKGVYKDL 138 query 156 DIALAICEDL--W--QDGGRVPAARSAGAGLLLSVNASP--YERDKDDT-R-LELVRKRA 207 :::::::::: : ::::::::::: :::::::::::: :::::::: : ::::::: d1ii7a_ 139 EIHGMKYMSSAWFEANKEILKRLFRP-TDNAILMLHQGVREVSEARGEDYFE-IGLGDLP 196 query 208 QEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQ--------F----------- 248 : :::::::::: :::::::: ::::::::: : d1ii7a_ 197 E--GYLYYALGHI-------HKRYETSY---SGSPVVYPGSLERWDFGDYEVRYEWDGIK 244 query 249 ------S-EGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYA-- 299 : ::::::::: ::::: d1ii7a_ 245 FKERYGVNKGFYIVEDF------------------------------------KPRFVEI 268 query 300 ------------------------------------------------------------ 300 d1ii7a_ 269 KVRPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGWRKPFDLTEIKELLNVEYLKI 328 query 300 -----DRL 302 d1ii7a_ 329 DTWRI--- 333 HHsearch alignment (Probability: 0.10 E-value:0.03) query 19 AGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSSFVEASRTALRELAARLAE 78 :::::::::::::::::::::::::: ::::::::::::::::::::::::: d1ii7a_ 23 EEFAEAFKNALEIAVQENVDFILIAG---------DLFHSSRPSPGTLKKAIALLQIPKE 73 query 79 EGFGELPVLVG 89 ::: ::::::: d1ii7a_ 74 HSI-PVFAIEG 83
Intermediate <-- 1.062 --> HitDALI alignment (Z-score: 2.7 Raw score:372.60) d1ii7a_ 1 -------------MKFAHLAD--------------------------------------- 8 :::::::: d1ijba_ 1 sepplhdfycsrlLDLVFLLDgssrlseaefevlkafvvdmmerlrvsqkwvrvavveyh 60 d1ii7a_ 9 ------------------ihlgyeqfhkpqreeefAEAFKNALEIAVQEN-----vDFIL 45 ::::::::::::::: :::: d1ijba_ 61 dgshayiglkdrkrpselrriasqvkyagsqvastSEVLKYTLFQIFSKIdrpeasRIAL 120 d1ii7a_ 46 IAGDlfhsSRPSPGTLKKAIALLQIPKEHSIPVFAIEG-NHDRtqrgpSVLNLLEDFG-l 103 :::: :::::::::::::::::::::::::::::: :::: :::::::::: d1ijba_ 121 LLMA----SQEPQRMSRNFVRYVQGLKKKKVIVIPVGIgPHAN----lKQIRLIEKQApe 172 d1ii7a_ 104 VYVIGmrkekveneyltserlgngeylvkgvykdleihgMKYMSsawfeankeilkrlfr 163 ::::: ::::: d1ijba_ 173 NKAFV----------------------------------LSSVD-------------ele 185 d1ii7a_ 164 ptdNAILmlhqgvrevseargedyfeiglgdlpegylyyalghihkryetsysgspvvyp 223 :::: d1ijba_ 186 qqrDEIV----------------------------------------------------- 192 d1ii7a_ 224 gslerwdfgdyevryewdgikfkerygvnkgfyivedfkprfveikvrpfidvkikgsee 283 d1ijba_ 193 ------------------------------------------------------------ 193 d1ii7a_ 284 eirkaikrliplipknayvrlnigwrkpfdlteikellnveylkidtwri 333 d1ijba_ 193 ----------------------------------------sylcdlapea 202 FAST alignment (Normalized score: 1.15 Raw score:298.00) d1ii7a_ 1 ------------MKFAHLADIHLGYEQFHKPQ--------REEEFAEAFKNALEIAVQEN 40 :::::: :::::::::::::::::::: d1ijba_ 1 SEPPLHDFYCSRLLDLVF--------------LLDGSSRLSEAEFEVLKAFVVDMMERLR 46 d1ii7a_ 41 V-----DFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNHDRTQRGPSVL 95 :::::: d1ijba_ 47 -VSQKWVRVAVV------------------------------------------------ 57 d1ii7a_ 96 NLLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANK 155 d1ijba_ 58 ------------------------------------------------------------ 58 d1ii7a_ 156 EILKRLFRPTDNAILMLHQGVREVSEARGEDYFEIGLGDLPEGYLYYALGHIHKRYETSY 215 d1ijba_ 58 ------------------------------------------------------------ 58 d1ii7a_ 216 SGSP-------------------------------------------------------- 219 d1ijba_ 58 ----EYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSEVLKYTLFQIFSKIDRP 113 d1ii7a_ 220 ---VVYPGSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIVED---------------- 260 :::: d1ijba_ 114 EASRIAL-------------------------------------LLMASQEPQRMSRNFV 136 d1ii7a_ 261 --------FKPRFVEIKVRPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGWRKPF 312 ::::::::::: d1ijba_ 137 RYVQGLKKKKVIVIPVGIG----------------------------------------- 155 d1ii7a_ 313 DLTEIKELLNVEYLKIDTWRI--------------------------------------- 333 d1ijba_ 156 ---------------------PHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSY 194 d1ii7a_ 334 -------- 334 d1ijba_ 195 LCDLAPEA 202 TMalign alignment (TM-score: 0.32 Raw score:105.65) d1ii7a_ 1 ---MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDL------- 50 ::: :::: ::::::::::: d1ijba_ 1 SEP----------------------------PLH--DFYC--SRLLDLVFLLDGSSRLSE 28 d1ii7a_ 51 --FHSSRPSPGT--LKKA--IALLQIPKEHSIPVFAIEGNHDRTQRGPSVLNLLEDFG-L 103 :::: : : : :::::::::::::::: ::::::::::: ::::: : d1ijba_ 29 AEFEVL-K---AFV---VDM--MERLRVSQKWVRVAVV---EYHDGSHAYIG-LKDRKRP 75 d1ii7a_ 104 --V-------------------YVIGMRK-EKVENEYLTSERLGNGEYLVKGVYKDLEIH 141 : ::::: :: :::: :::::::::: d1ijba_ 76 SELRRIASQVKYAGSQVASTSE--VLKYTL-FQ----IFSK---------IDRPEASRIA 119 d1ii7a_ 142 GMKYMSSAWFEANKEILKRLFR--PTDNAILMLHQGVREVSEARGEDYFEIG-LGDLPEG 198 ::::::::: :::::::::::: :::::::::::: : :::::: ::::::: d1ijba_ 120 LLLMASQEP-QRMSRNFVRYVQGLKKKKVIVIPVGI----G-----PHANLKQIRLIEKQ 169 d1ii7a_ 199 YLYYALGHIHKR-YETSYSGSPVVYPGSLERWDFGDYEVRYEWDGIKFKERYGVNKGFY- 256 :::::::::::: ::: ::::: d1ijba_ 170 APENKAFVLSSVD-------------ELE-------------------------QQRDEI 191 d1ii7a_ 257 -IV--EDF---KPRFVEIKVRPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGWRK 310 :: ::: d1ijba_ 192 VSYLCDLAPEA------------------------------------------------- 202 d1ii7a_ 311 PFDLTEIKELLNVEYLKIDTWRI 333 d1ijba_ 203 ----------------------- 203 HHsearch alignment (Probability: 0.09 E-value:0.07) d1ii7a_ 285 IRKAIKRLI 293 ::::::::: d1ijba_ 184 LEQQRDEIV 192