Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1emsa2 | NIT-FHIT fusion protein, N-terminal domain | Carbon-nitrogen hydrolase | Carbon-nitrogen hydrolase | α+β |
| Hit | d1gcia_ | Subtilisin | Subtilisin-like | Subtilisin-like | α/β |
Query <-- 1.249 --> IntermediateDALI alignment (Z-score: 25.8 Raw score:2597.80) query 1 --SLQLRLALNQIDSTvGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGyPVED-LAL 57 :::::::::::::: :::::::::::::::::::::::::::::::::: :::: ::: d1emsa2 1 maTGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFI-GLNKnEQI 58 query 58 RssFVEASR-TALRELAARLAeegFGELPVLV-GYLDRSEsaqpkygqPAGA-PRNAAAV 114 : :::::: ::::::::::: :::::::: ::::::: :::: ::::::: d1emsa2 59 D--LAMATDcEYMEKYRELAR---KHNIWLSLgGLHHKDP--------SDAAhPWNTHLI 105 query 115 LH-RGRVALTFAKHHLPNY-----gvFDEFRYFVPG-DTMPIVRLHGVDIALAICEDLWQ 167 :: :::::::::::::::: :::::::::: ::::::::::::::::::::::: d1emsa2 106 IDsDGVTRAEYNKLHLFDLeipgkvrLMESEFSKAGtEMIPPVDTPIGRLGLSICYDVRF 165 query 168 DGgRVPAARSAGAGLLLSVNASPYErdkdDTRLELVRKRAQEAGCTTAYLAMIGG-QDEL 226 :: :::::::::::::::::::::: :::::::::::::::::::::::::: :::: d1emsa2 166 PE-LSLWNRKRGAQLLSFPSAFTLN-tglAHWETLLRARAIENQCYVVAAAQTGAhNPKR 223 query 227 VFDGDSIVVDRDGEVVARAPQfSEGCVVLDLDLPaaeaepptgvvddglridrlviseep 286 ::::::::::::::::::::: :::::::::::: d1emsa2 224 QSYGHSMVVDPWGAVVAQCSE-RVDMCFAEIDLS-------------------------- 256 query 287 lpayeaelaggyadrl 302 d1emsa2 257 -yvdtlremqpvfshr 271 FAST alignment (Normalized score: 18.48 Raw score:5286.00) query 1 --SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLAL- 57 ::::::::::::: ::::::::::::::::::::::::::::::::: d1emsa2 1 MATGRHFIAVCQMTS-DNDLEKNFQAAKNMIERAGEKKCEMVFLPECFD----------F 49 query 58 -------RSSFVEASR-TALRELAARLAEEGFGELPVLV-GYLDRSESAQPKYGQPA--- 105 ::::::::: :::::::::::: ::::::: ::::::: d1emsa2 50 IGLNKNEQIDLAMATDCEYMEKYRELARK---HNIWLSLGGLHHKDP----------SDA 96 query 106 GAPRNAAAVL-HRGRVALTFAKHHLPNYGV---------FDEFRYFVPGDTM-PIVRLHG 154 :::::::::: ::::::::::::::: ::::::::::::: ::::: d1emsa2 97 AHPWNTHLIIDSDGVTRAEYNKLHLF----DLEIPGKVRLMESEFSKAGTEMIPPVDT-- 150 query 155 --VDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKD-----DTRLELVRKRA 207 :::::::::::::: ::::::::::::::::::::: ::::::::::: d1emsa2 151 PIGRLGLSICYDVRFP-ELSLWNRKRGAQLLSFPSAFT------LNTGLAHWETLLRARA 203 query 208 QEAGCTTAYLAMIGG-QDELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEP 266 ::::::::::::::: :::::::::::::::::::::::: ::::::::::: d1emsa2 204 IENQCYVVAAAQTGAHNPKRQSYGHSMVVDPWGAVVAQCS-ERVDMCFAEID-------- 254 query 267 PTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADRL----------------- 302 d1emsa2 255 ------------------------------------LSYVDTLREMQPVFSHR 271 TMalign alignment (TM-score: 0.72 Raw score:216.66) query 1 --SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALR 58 :::::::::::::: :::::::::::::::::::::::::::::::::: :::::::: d1emsa2 1 MATGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFI-GLNKNEQI 58 query 59 SSFVEASRTALRELAARLAEEGFGELPVLV-GYLDRSESAQPKYGQPAG-APRNAAAVLH 116 ::::::::::::::::::: :: :::::: :::::::: :: :::::::::: d1emsa2 59 -DLAMATDCEYMEKYRELAR-KH-NIWLSLGGLHHKDPS--------DAAHPWNTHLIID 107 query 117 -RGRVALTFAKHHLPNY-----GVFDEFRYFVPG-DTMPIVRLHGVDIALAICEDLWQDG 169 :::::::::::::::: :::::::::::: ::::::::::::::::::::::::: d1emsa2 108 SDGVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPE 167 query 170 GRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQ-DELVF 228 : ::::::::::::::::::::::: :::::::::::::::::::::::::::: ::::: d1emsa2 168 L-SLWNRKRGAQLLSFPSAFTLNTG-LAHWETLLRARAIENQCYVVAAAQTGAHNPKRQS 225 query 229 DGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAE------------AEPPTGVVDDGLR 276 :::::::::::::::::: :::::::::::::::: d1emsa2 226 YGHSMVVDPWGAVVAQCS-ERVDMCFAEIDLSYVDTLREMQPVFSHR------------- 271 query 277 IDRLVISEEPLPAYEAELAGGYADRL 302 d1emsa2 272 -------------------------- 272 HHsearch alignment (Probability: 1.00 E-value:0.00) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 :::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: d1emsa2 3 TGRHFIAVCQMTSD-NDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLA 61 query 61 FVEASR--TALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLH-R 117 :::::: :::::::::: :::::::::::::: :::::::::::::: : d1emsa2 62 MATDCEYMEKYRELARKH------NIWLSLGGLHHKDP------SDAAHPWNTHLIIDSD 109 query 118 GRVALTFAKHHL-----PNYGVFDEFRYFVPGDTM-PIVRLHGVDIALAICEDLWQDGGR 171 :::::::::::: :::::::::::::::::: :::::::::::::::::::::: : d1emsa2 110 GVTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPE-L 168 query 172 VPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGG-QDELVFDG 230 ::::::::::::::::::::::: ::::::::::::::::::::::::::: :::::::: d1emsa2 169 SLWNRKRGAQLLSFPSAFTLNTG-LAHWETLLRARAIENQCYVVAAAQTGAHNPKRQSYG 227 query 231 DSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGL 275 ::::::::::::::::: ::::::::::::::::::::::::::: d1emsa2 228 HSMVVDPWGAVVAQCSE-RVDMCFAEIDLSYVDTLREMQPVFSHR 271
Intermediate <-- 0.709 --> HitDALI alignment (Z-score: 1.5 Raw score:347.60) d1emsa2 1 --------------------MATGRHFIAVCQM--------------------------- 13 ::::::::::::: d1gcia_ 1 aqsvpwgisrvqapaahnrgLTGSGVKVAVLDTgisthpdlnirggasfvpgepstqdgn 60 d1emsa2 14 --------------------------------tsdndleKNFQAAKNMIERAGEKKCEMV 41 ::::::::::::::::::::: d1gcia_ 61 ghgthvagtiaalnnsigvlgvapsaelyavkvlgasgsGSVSSIAQGLEWAGNNGMHVA 120 d1emsa2 42 FLPecFDFIglnkneqidlamaTDCEYMEKYRELARKHNIWLSLGGLhhkdpsdaahpwn 101 ::: :::: ::::::::::::::::::::::::: d1gcia_ 121 NLS--LGSP-------------SPSATLEQAVNSATSRGVLVVAASG---nsgagsisyp 162 d1emsa2 102 thliidsdgvtraeynkLHLFdleipgkvrlmesefskagtemippvdtpigrlGLSICy 161 :::: ::::: d1gcia_ 163 aryanamavgatdqnnnRASF--------------------------sqygaglDIVAP- 195 d1emsa2 162 DVRFP-elslwnrkrgaqllSFPSaftlntglahwetllraraienqcyvvaaaqtgahn 220 ::::: :::: d1gcia_ 196 GVNVQstypgstyaslngtsMATP------------------------------------ 219 d1emsa2 221 pkrqsyghsmvvdpwgavvaqcservdmcfaeiDLSY----------------------- 257 :::: d1gcia_ 220 ------------------------hvagaaalvKQKNpswsnvqirnhlkntatslgstn 255 d1emsa2 258 vdtlremqpvfshr 271 d1gcia_ 256 lygsglvnaeaatr 269 FAST alignment (Normalized score: 1.93 Raw score:521.40) d1emsa2 1 MA----------------------TGRHFIAVCQMTSDNDLEK----------------- 21 ::::::::: d1gcia_ 1 --AQSVPWGISRVQAPAAHNRGLTGSGVKVAVL----------DTGISTHPDLNIRGGAS 48 d1emsa2 22 ----------------------------------------------------NFQAAKNM 29 :::::::: d1gcia_ 49 FVPGEPSTQDGNGHGTHVAGTIAALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQG 108 d1emsa2 30 IERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCEY-------MEKYRELARK---H 79 :::::::::::::: :::::::::: : d1gcia_ 109 LEWAGNNGMHVANL-------------------------SLGSPSPSATLEQAVNSATSR 143 d1emsa2 80 NIWLSLGGLHHKDPSDAAHPWNTHLIIDSDG----------------------------- 110 ::::::::: d1gcia_ 144 GVLVVAASG----------------------NSGAGSISYPARYANAMAVGATDQNNNRA 181 d1emsa2 111 -------VTRAEYNKLHLFDLEIPGKVRLMESEFSKAGTEMIPPVDTPIGRLGLSICYDV 163 :::::::: d1gcia_ 182 SFSQYGAGLDIVAPG--------------------------------------------- 196 d1emsa2 164 RFPELSLWNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQCYVVAAAQTGAHNPKR 223 d1gcia_ 197 ------------------------------------------------------------ 197 d1emsa2 224 QSYGHSMVVDPWGAVVAQCSERVDMCFAEIDLSYVDTLREMQPVFSHR------------ 271 d1gcia_ 197 ------------------------------------------------VNVQSTYPGSTY 208 d1emsa2 272 ------------------------------------------------------------ 272 d1gcia_ 209 ASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNLYGSGLVNAEAAT 268 d1emsa2 272 - 272 d1gcia_ 269 R 269 TMalign alignment (TM-score: 0.34 Raw score:91.20) d1emsa2 1 -------MATGRHFIAVCQ-------------MTSDNDLEKNFQAAKNMIERAGEKKCEM 40 : :: ::: : d1gcia_ 1 AQSVPWG-----------ISRVQAPAAHNRGL-------------------TG--SGV-K 27 d1emsa2 41 VFLPECFDFI------------GLNKNEQIDLAMATDCEYM------------------- 69 :::::::::: ::::: ::: d1gcia_ 28 VAVLDTGISTHPDLNIRGGASF----------VPGEP-STQDGNGHGTHVAGTIAALNNS 76 d1emsa2 70 ----------EKYRELARKHNIWLSLGGLHHKDPSDAAHPWN--TH--LI-IDSDGVT-- 112 :::::::::: ::::: :: :: ::::::: d1gcia_ 77 IGVLGVAPSA-----------ELYAVKVLGA------SGSGSVSSIAQGLEWAGNNGMHV 119 d1emsa2 113 RA-EY-NKLHLFDLEIPGKVRLMESEFSKAGTEM-IPP-VD--T--PIGRLGLSICYDVR 164 : : :::: :::: ::: :: : ::: :::: : ::: d1gcia_ 120 -AN-LSLGSP--------------------SPSATLEQAVNSATSRGVL-VVAA-S-GNS 154 d1emsa2 165 -FPELSLWNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQCYVVAA--AQTGAHNP 221 ::::::::: :::::::: : ::::::::::::::::::::::: :::::::: d1gcia_ 155 GAGSISYPAR-YANAMAVG---A----TDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGS 206 d1emsa2 222 KRQSY----GH-SMVVDPWGAVVAQCSERVDMCFAE----------IDLSYVDTL----R 262 ::::: :: :::: ::: :::: ::::::::: d1gcia_ 207 TYASLNGTSMATPHVA------GAA-------ALVKQKNPSWSNVQIRNHLKNTATSLG- 252 d1emsa2 263 EMQPV--------------FSHR 271 ::: d1gcia_ 253 --STNLYGSGLVNAEAATR---- 269 HHsearch alignment (Probability: 0.21 E-value:0.01) d1emsa2 165 FPELSLWNRKRGAQLLSFPSAFTLNTGLAHWETLLRARAIENQC-YVVAAAQTGA 218 ::::::::::::::::::: :::::::::::::: :::::::: :::::::::: d1gcia_ 105 IAQGLEWAGNNGMHVANLS--LGSPSPSATLEQAV-NSATSRGVLVVAASGNSGA 156