Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1uf5a_ | N-carbamoyl-D-aminoacid amidohydrolase | Carbon-nitrogen hydrolase | Carbon-nitrogen hydrolase | α+β |
| Hit | d1vhua_ | Hypothetical protein AF1521 | Macro domain-like | Macro domain-like | α/β |
Query <-- 1.392 --> IntermediateDALI alignment (Z-score: 24.9 Raw score:2592.30) query 1 SLQLRLALNQIDSTV--GDIAGNAEAILRWTRHSAEQGAHLVAFPEMALtGYPVE----- 53 ::::::::::::::: :::::::::::::::::::::::::::::::: ::::: d1uf5a_ 1 TRQMILAVGQQGPIAraETREQVVVRLLDMLTKAASRGANFIVFPELAL-TTFFPrwhft 59 query 54 --dLALRssFVEASRT-ALRELAARLAeegFGELPVLVGYLDRSESAqpkygqPAGAPRN 110 :::: ::::::: :::::::::: ::::::::::::::::: ::::::: d1uf5a_ 60 deaELDS-fYETEMPGpVVRPLFEKAA---ELGIGFNLGYAELVVEG------GVKRRFN 109 query 111 AAAVLH-RGRVALTFAKHHLPNY--------gVFDEFRYFVPGD-TMPIVRLHGVDIALA 160 :::::: :::::::::::::::: :::::::::::: ::::::::::::::: d1uf5a_ 110 TSILVDkSGKIVGKYRKIHLPGHkeyeayrpfQHLEKRYFEPGDlGFPVYDVDAAKMGMF 169 query 161 ICEDLWQDgGRVPAARSAGAGLLLSVNASPYE------RDKD--DTRLELVRKRAQEAGC 212 :::::::: ::::::::::::::::::::::: :::: :::::::::::::::: d1uf5a_ 170 IANDRRWP-EAWRVMGLRGAEIICGGYNTPTHnppvpqHDHLtsFHHLLSMQAGSYQNGA 228 query 213 TTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPaaeaepptgvvd 272 :::::::::::::::::::::::::::::::::::::::::::::::: d1uf5a_ 229 WSAAAGKAGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLD------------ 276 query 273 dglridrlviseeplpayeaelaggyadrl 302 d1uf5a_ 277 ---rcrelrehifnfkqhrqpqhygliael 303 FAST alignment (Normalized score: 18.04 Raw score:5458.00) query 1 SLQLRLALNQ-IDSTVG-DIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLAL- 57 :::::::::: :::::: ::::::::::::::::::::::::::::::::: d1uf5a_ 1 TRQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTT--------F 52 query 58 -----------RSSFVEAS------RTALRELAARLAEEGFGELPVLVGYLDRSESAQPK 100 :::: ::::::::::::: ::::::::::::: d1uf5a_ 53 FPRWHFTDEAELDSF----YETEMPGPVVRPLFEKAAE---LGIGFNLGYAELV------ 99 query 101 YGQP----AGAPRNAAAV-LHRGRVALTFAKHHLPNYG------------VFDEFRYFVP 143 :::::::::: ::::::::::::::: :::::::::: d1uf5a_ 100 ----VEGGVKRRFNTSILVDKSGKIVGKYRKIHL----PGHKEYEAYRPFQHLEKRYFEP 151 query 144 GD-TMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKD------ 196 :: ::::::::::::::::::::::: ::::::::::::::::::::: d1uf5a_ 152 GDLGFPVYDVDAAKMGMFIANDRRWP-EAWRVMGLRGAEIICGGYNTP------THNPPV 204 query 197 --------DTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQF 248 :::::::::::::::::::::::::::::::::::::::::::::::::::: d1uf5a_ 205 PQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKAGMEENCMLLGHSCIVAPTGEIVALTTTL 264 query 249 SEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADRL------ 302 :::::::::: d1uf5a_ 265 EDEVITAAVD--------------------------------------------LDRCRE 280 query 303 ----------------------- 303 d1uf5a_ 281 LREHIFNFKQHRQPQHYGLIAEL 303 TMalign alignment (TM-score: 0.73 Raw score:221.60) query 1 SLQLRLALNQID-STVGD-IAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPV-E-DLA 56 :::::::::::: ::::: ::::::::::::::::::::::::::::::::::: : ::: d1uf5a_ 1 TRQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTD 60 query 57 LR-SSFVEASRTALRELAARLAEEGFG-ELPVLVGYLDRSESAQPKYGQPAGAPRNAAAV 114 :: ::::: :::::::::::::::::: ::::::::::::::: ::::::::::: d1uf5a_ 61 EAELDSFY-ETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEG------GVKRRFNTSIL 113 query 115 LH-RGRVALTFAKHHLPNYG--------VFDEFRYFVPGDT-MPIVRLHGVDIALAICED 164 :: ::::::::::::::::: ::::::::::::: :::::::::::::::::: d1uf5a_ 114 VDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIAND 173 query 165 LWQDGGRVPAARSAGAGLLLSVNASPYE-------RDKD-DTRLELVRKRAQEAGCTTAY 216 ::::: :::::::::::::::::::::: :::: :::::::::::::::::::: d1uf5a_ 174 RRWPE-AWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAA 232 query 217 LAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAE------------- 263 ::::::::::::::::::::::::::::::::::::::::::::::: d1uf5a_ 233 AGKAGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHR 292 query 264 -------AEPPTGVVDDG-LRIDRLVISEEPLPAYEAELAGGYADRL 302 ::: d1uf5a_ 293 QPQHYGL--------IAEL---------------------------- 303 HHsearch alignment (Probability: 1.00 E-value:0.00) query 1 SLQLRLALNQIDST--VGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALR 58 :::::::::::::: :::::::::::::::::::::::::::::::::::::::::::: d1uf5a_ 1 TRQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTD 60 query 59 SSFVEA---------SRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPR 109 :::::: :::::::::::: :::::::::::::: ::::::: d1uf5a_ 61 EAELDSFYETEMPGPVVRPLFEKAAEL------GIGFNLGYAELVVE------GGVKRRF 108 query 110 NAAAVLH-RGRVALTFAKHHLPNYGVFD--------EFRYFVPGDT-MPIVRLHGVDIAL 159 ::::::: :::::::::::::::::::: :::::::::: ::::::::::::: d1uf5a_ 109 NTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGM 168 query 160 AICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDT--------RLELVRKRAQEAG 211 :::::::::: :::::::::::::::::::::::::::: ::::::::::::: d1uf5a_ 169 FIANDRRWPE-AWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNG 227 query 212 CTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPT-GV 270 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: d1uf5a_ 228 AWSAAAGKAGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFN 287 query 271 VDDGLRID 278 :::::::: d1uf5a_ 288 FKQHRQPQ 295
Intermediate <-- 0.789 --> HitDALI alignment (Z-score: 1.1 Raw score:283.90) d1uf5a_ 1 ---------------------trqmiLAVGQQGP-------------------------- 13 :::::::: d1vhua_ 1 mevlfeakvgditlklaqgditqypaKAIVNAANkrlehgggvayaiakacagdaglyte 60 d1uf5a_ 14 -----------------------------------------IARA-----eTREQVVVRL 27 :::: ::::::::: d1vhua_ 61 iskkamreqfgrdyidhgevvvtpamnleergikyvfhtvgPICSgmwseeLKEKLYKAF 120 d1uf5a_ 28 LDMLTKAASRGANFIVFPelALTTFFprwhftdeaeldSFYEtempgpvVRPLFEKaAEL 87 :::::::::::::::::: :::::: :::: ::::::: ::: d1vhua_ 121 LGPLEKAEEMGVESIAFP--AVSAGI---------ygcDLEK--vvetfLEAVKNF-KGS 166 d1uf5a_ 88 GI-GFNLGYaelvveggvkrrFNTSilvdksgkivgkyrkihlpghkeyeayrpfqhlek 146 :: :::::: :::: d1vhua_ 167 AVkEVALVI---------ydrKSAE----------------------------------- 182 d1uf5a_ 147 ryfepgdlgfpvydvdaakmgmfiandrrwpeawrvmglrgaeiicggyntpthnppvpq 206 d1vhua_ 183 ------------------------------------------------------------ 183 d1uf5a_ 207 hdhltsfhhllsmqagsyqngawsaaagkagmeencmllghscivaptgeivaltttled 266 d1vhua_ 183 ------------------------------------------------------------ 183 d1uf5a_ 267 evitaavdldrcrelrehifnfkqhrqpqhygliael 303 d1vhua_ 183 ---------------------------valkvfersl 192 FAST alignment (Normalized score: 1.42 Raw score:343.10) d1uf5a_ 1 TRQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTD 60 d1vhua_ 1 ------------------------------------------------------------ 1 d1uf5a_ 61 EAELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVD----- 115 d1vhua_ 1 -------------------------------------------------------MEVLF 5 d1uf5a_ 116 ------------------------------------------------------------ 116 d1vhua_ 6 EAKVGDITLKLAQGDITQYPAKAIVNAANKRLEHGGGVAYAIAKACAGDAGLYTEISKKA 65 d1uf5a_ 116 -----------------------KSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPG 152 ::::::::: :::: d1vhua_ 66 MREQFGRDYIDHGEVVVTPAMNLEERGIKYVF--HTVG---------------------- 101 d1uf5a_ 153 DLGFPVYDVDAAKMGMFIANDRR------------------WPEAWRVMGLRGAEIICGG 194 :::::::::::::::::: d1vhua_ 102 -----------------------PICSGMWSEELKEKLYKAFLGPLEKAEEMGVESIAF- 137 d1uf5a_ 195 YNTPTHNPPVPQHDHL----------TSFHHLLSMQAGSYQNG-------AWSAAAGKAG 237 :::::::::::::: ::::::: d1vhua_ 138 ----------------PAVSAGIYGCDLEKVVETFLEAVK---NFKGSAVKEVALVI--- 175 d1uf5a_ 238 MEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHRQPQHY 297 d1vhua_ 176 ------------------------------------------------------------ 176 d1uf5a_ 298 GLIAEL----------------- 303 d1vhua_ 176 ------YDRKSAEVALKVFERSL 192 TMalign alignment (TM-score: 0.29 Raw score:87.20) d1uf5a_ 1 TRQMILA--------------VGQQGPIARAETREQVVVRLLDMLTKAASRGANFI---- 42 ::: :: : :::: d1vhua_ 1 ----MEVLFEAKVGDITLKLA----------------------QG--D----ITQYPAKA 28 d1uf5a_ 43 VFPELALTTF-FP--RWHFTDEAELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELV 99 ::::: : : ::: ::::: d1vhua_ 29 IVNAA----NK-RLE------------HGG----------------------GVAYA--- 46 d1uf5a_ 100 VEGGVKRRFNTSILVDKSGKIVG-KYR--KI---------HLPG----HKEYEAYRPFQH 143 ::::: :::: ::: :: :::: d1vhua_ 47 ----------IAKAC----AGDAGLYTEISKKAMREQFGRDYIDHGEV------------ 80 d1uf5a_ 144 LEKRYFEPGDLGFPVY-DVDAAKMGMFIANDRRWPEAWRVMGLRGAEIICGGYNTPTH-- 200 : ::::: ::::::::::::: ::::: d1vhua_ 81 --------V--VTPAMNLEERGIKYVFHTV-----------------------GPICSGM 107 d1uf5a_ 201 -NPPVPQHDHLTSFHHLLSMQAGSYQNGA-WSAAAGKAGMEENCML--LGH--SC--I-- 250 :::::::::::::::::::::::: :::::::::::: ::: ::: :: : d1vhua_ 108 W----SEELKEKLYKAFLGPLEKAEEMGVESIAFPAVSAGIY-GCDLEKVVETFLEAVKN 162 d1uf5a_ 251 V-APTGEIVALTT-TL-EDEV-I--------TAAVDLDRCRELREHIFNFKQHRQPQHYG 298 : ::::::::::: : :::: : d1vhua_ 163 FKGSAVKEVALVIY-DRKSAEVALKVFERSL----------------------------- 192 d1uf5a_ 299 LIAEL 303 d1vhua_ 193 ----- 193 HHsearch alignment (Probability: 0.04 E-value:0.17) d1uf5a_ 36 SRGANFIVFPEL 47 :::::::::::: d1vhua_ 23 QYPAKAIVNAAN 34