Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1uf5a_ | N-carbamoyl-D-aminoacid amidohydrolase | Carbon-nitrogen hydrolase | Carbon-nitrogen hydrolase | α+β |
| Hit | d1ntfa_ | Salivary nitrophorin | DNase I-like | DNase I-like | α+β |
Query <-- 1.392 --> IntermediateDALI alignment (Z-score: 24.9 Raw score:2592.30) query 1 SLQLRLALNQIDSTV--GDIAGNAEAILRWTRHSAEQGAHLVAFPEMALtGYPVE----- 53 ::::::::::::::: :::::::::::::::::::::::::::::::: ::::: d1uf5a_ 1 TRQMILAVGQQGPIAraETREQVVVRLLDMLTKAASRGANFIVFPELAL-TTFFPrwhft 59 query 54 --dLALRssFVEASRT-ALRELAARLAeegFGELPVLVGYLDRSESAqpkygqPAGAPRN 110 :::: ::::::: :::::::::: ::::::::::::::::: ::::::: d1uf5a_ 60 deaELDS-fYETEMPGpVVRPLFEKAA---ELGIGFNLGYAELVVEG------GVKRRFN 109 query 111 AAAVLH-RGRVALTFAKHHLPNY--------gVFDEFRYFVPGD-TMPIVRLHGVDIALA 160 :::::: :::::::::::::::: :::::::::::: ::::::::::::::: d1uf5a_ 110 TSILVDkSGKIVGKYRKIHLPGHkeyeayrpfQHLEKRYFEPGDlGFPVYDVDAAKMGMF 169 query 161 ICEDLWQDgGRVPAARSAGAGLLLSVNASPYE------RDKD--DTRLELVRKRAQEAGC 212 :::::::: ::::::::::::::::::::::: :::: :::::::::::::::: d1uf5a_ 170 IANDRRWP-EAWRVMGLRGAEIICGGYNTPTHnppvpqHDHLtsFHHLLSMQAGSYQNGA 228 query 213 TTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPaaeaepptgvvd 272 :::::::::::::::::::::::::::::::::::::::::::::::: d1uf5a_ 229 WSAAAGKAGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLD------------ 276 query 273 dglridrlviseeplpayeaelaggyadrl 302 d1uf5a_ 277 ---rcrelrehifnfkqhrqpqhygliael 303 FAST alignment (Normalized score: 18.04 Raw score:5458.00) query 1 SLQLRLALNQ-IDSTVG-DIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLAL- 57 :::::::::: :::::: ::::::::::::::::::::::::::::::::: d1uf5a_ 1 TRQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTT--------F 52 query 58 -----------RSSFVEAS------RTALRELAARLAEEGFGELPVLVGYLDRSESAQPK 100 :::: ::::::::::::: ::::::::::::: d1uf5a_ 53 FPRWHFTDEAELDSF----YETEMPGPVVRPLFEKAAE---LGIGFNLGYAELV------ 99 query 101 YGQP----AGAPRNAAAV-LHRGRVALTFAKHHLPNYG------------VFDEFRYFVP 143 :::::::::: ::::::::::::::: :::::::::: d1uf5a_ 100 ----VEGGVKRRFNTSILVDKSGKIVGKYRKIHL----PGHKEYEAYRPFQHLEKRYFEP 151 query 144 GD-TMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKD------ 196 :: ::::::::::::::::::::::: ::::::::::::::::::::: d1uf5a_ 152 GDLGFPVYDVDAAKMGMFIANDRRWP-EAWRVMGLRGAEIICGGYNTP------THNPPV 204 query 197 --------DTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQF 248 :::::::::::::::::::::::::::::::::::::::::::::::::::: d1uf5a_ 205 PQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKAGMEENCMLLGHSCIVAPTGEIVALTTTL 264 query 249 SEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADRL------ 302 :::::::::: d1uf5a_ 265 EDEVITAAVD--------------------------------------------LDRCRE 280 query 303 ----------------------- 303 d1uf5a_ 281 LREHIFNFKQHRQPQHYGLIAEL 303 TMalign alignment (TM-score: 0.73 Raw score:221.60) query 1 SLQLRLALNQID-STVGD-IAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPV-E-DLA 56 :::::::::::: ::::: ::::::::::::::::::::::::::::::::::: : ::: d1uf5a_ 1 TRQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTD 60 query 57 LR-SSFVEASRTALRELAARLAEEGFG-ELPVLVGYLDRSESAQPKYGQPAGAPRNAAAV 114 :: ::::: :::::::::::::::::: ::::::::::::::: ::::::::::: d1uf5a_ 61 EAELDSFY-ETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEG------GVKRRFNTSIL 113 query 115 LH-RGRVALTFAKHHLPNYG--------VFDEFRYFVPGDT-MPIVRLHGVDIALAICED 164 :: ::::::::::::::::: ::::::::::::: :::::::::::::::::: d1uf5a_ 114 VDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIAND 173 query 165 LWQDGGRVPAARSAGAGLLLSVNASPYE-------RDKD-DTRLELVRKRAQEAGCTTAY 216 ::::: :::::::::::::::::::::: :::: :::::::::::::::::::: d1uf5a_ 174 RRWPE-AWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNGAWSAA 232 query 217 LAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAE------------- 263 ::::::::::::::::::::::::::::::::::::::::::::::: d1uf5a_ 233 AGKAGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFNFKQHR 292 query 264 -------AEPPTGVVDDG-LRIDRLVISEEPLPAYEAELAGGYADRL 302 ::: d1uf5a_ 293 QPQHYGL--------IAEL---------------------------- 303 HHsearch alignment (Probability: 1.00 E-value:0.00) query 1 SLQLRLALNQIDST--VGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALR 58 :::::::::::::: :::::::::::::::::::::::::::::::::::::::::::: d1uf5a_ 1 TRQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTD 60 query 59 SSFVEA---------SRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPR 109 :::::: :::::::::::: :::::::::::::: ::::::: d1uf5a_ 61 EAELDSFYETEMPGPVVRPLFEKAAEL------GIGFNLGYAELVVE------GGVKRRF 108 query 110 NAAAVLH-RGRVALTFAKHHLPNYGVFD--------EFRYFVPGDT-MPIVRLHGVDIAL 159 ::::::: :::::::::::::::::::: :::::::::: ::::::::::::: d1uf5a_ 109 NTSILVDKSGKIVGKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGM 168 query 160 AICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDKDDT--------RLELVRKRAQEAG 211 :::::::::: :::::::::::::::::::::::::::: ::::::::::::: d1uf5a_ 169 FIANDRRWPE-AWRVMGLRGAEIICGGYNTPTHNPPVPQHDHLTSFHHLLSMQAGSYQNG 227 query 212 CTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPT-GV 270 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :: d1uf5a_ 228 AWSAAAGKAGMEENCMLLGHSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFN 287 query 271 VDDGLRID 278 :::::::: d1uf5a_ 288 FKQHRQPQ 295
Intermediate <-- 1.244 --> HitDALI alignment (Z-score: 4.9 Raw score:655.30) d1uf5a_ 1 -TRQMILAVGQQGPIAraETREqvvVRLLDMLTKaaSRGANFIVFPelaltTFFPrwhft 59 ::::::::::::::: :::: ::::::::: :::::::::: :::: d1ntfa_ 1 pPAQLSVHTVSWNSGH--ERAP---TNLEELLGLnsGETPDVIAVA---vqGFGF----- 47 d1uf5a_ 60 deaeLDSFyetempGPVV-RPLFEKAAELGIG-fnLGYAelvveggvkrrfntSILVDKS 117 :::: :::: ::::::::::::: :::: ::::::: d1ntfa_ 48 ---qTDKP----qqGPACvKNFQSLLTSKGYTklkNTIT----------etmgLTVYCLE 90 d1uf5a_ 118 -----gkivGKYRKiHLPGHKeyeayrpfqhlekryfepgdlgfpVYDVdaakmgmfian 172 ::::: :::::: :::: d1ntfa_ 91 khldqntlkNETII-VTVDDQ----------------kksggivtSFTI----------- 122 d1uf5a_ 173 drrwpeawrvmglrGAEIICGGYnTPTHNPP-vPQHDhlTSFHhllSMQAGsyQNGAWSA 231 ::::::::: ::::::: :::: :::: ::::: ::::::: d1ntfa_ 123 -------------yNKRFSFTTS-RMSDEDVtsTNTK--YAYDtrlDYSKK-dDPSDFLF 165 d1uf5a_ 232 AAGK-------------------------------------------------------- 235 :::: d1ntfa_ 166 WIGDlnvrvetnathakslvdqnnidglmafdqlkkakeqklfdgwtepqvtfkptykfk 225 d1uf5a_ 236 -----agmeencmlLGHSCIVAPT----------geivaltttLEDEVITAAVDLdrcre 280 :::::::::: :::::::::::: d1ntfa_ 226 pntdeydlsatpswTDRALYKSGTgktiqplsynsltnykqteHRPVLAKFRVTL----- 280 d1uf5a_ 281 lrehifnfkqhrqpqhygliael 303 d1ntfa_ 281 ----------------------- 281 FAST alignment (Normalized score: 3.74 Raw score:1090.00) d1uf5a_ 1 T--RQMILAVGQQGPI--ARAETREQV-VVRLLDMLTKAA-----SRGANFIVFPELALT 50 ::::::::: ::::: ::::::: ::::::::: d1ntfa_ 1 -PPAQLSVHTVS----WNSGHER----APTNLEEL-----LGLNSGETPDVIAV------ 40 d1uf5a_ 51 TFFPRWHFTDEAELDSFYETEMPGPV------------------VRPLFEKAAELGIG-F 91 :::::::::::::: : d1ntfa_ 41 --------------------------AVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKL 74 d1uf5a_ 92 NLGYAELVVEGGVKRR---FNTSILVDKSGKI-----------VGKYRKIHLPGHKEYEA 137 ::: :::::::: :::: ::::: d1ntfa_ 75 KNT-------------ITETMGLTVYC-----LEKHLDQNTLKNETI--IVTVD------ 108 d1uf5a_ 138 YRPFQHLEKRYFEPGDL-------GFPVYDVDAAKMGMFIANDR---------------- 174 ::::::::::::::: d1ntfa_ 109 -----------------DQKKSGGIVTSFTIYNKRFSFT-----TSRMSDEDVTSTNTKY 146 d1uf5a_ 175 -RWPEAWRV----MGLRGAEIICGGYNTPTHNPPVPQHDHL------------------- 210 :::: :::::::::::::::: d1ntfa_ 147 AYDTR----LDYSKKDDPSDFLFWIGDLN------------VRVETNATHAKSLVDQNNI 190 d1uf5a_ 211 -------TSFHHLLSMQAGSYQNGAWSAAAGKAGMEENCML------------------- 244 :::::: d1ntfa_ 191 DGLMAFDQLKKAK----------------------------EQKLFDGWTEPQVTFKPTY 222 d1uf5a_ 245 -----------------LGHSCIVAPT------GEIVALTTT-----------LEDEVIT 270 ::::::: ::::: ::::::: d1ntfa_ 223 KFKPNTDEYDLSATPSWTDRALYK---SGTGKTIQPLS----YNSLTNYKQTEHRPVLAK 275 d1uf5a_ 271 AAVDLDRCRELREHIFNFKQHRQPQHYGLIAEL-- 303 ::: d1ntfa_ 276 FRV------------------------------TL 280 TMalign alignment (TM-score: 0.50 Raw score:151.97) d1uf5a_ 1 T-RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFT 59 : :::::::::: :::: ::: : ::::::::::::::::::::::: :: d1ntfa_ 1 PPAQLSVHTVSW-NSGH-ERA-P--TNLEELLGLNSGETPDVIAVAVQ----GF------ 45 d1uf5a_ 60 DEAELDSFYETEMPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVKRRFNTSILVDKSG- 118 ::::::::: ::::::::::::::::::::::::: :::::::::::: d1ntfa_ 46 --GFQTDKPQQ--GPACVKNFQSLLTSKGYTKLKNTIT---------ETMGLTVYCLEKH 92 d1uf5a_ 119 K-I--V-GKYRKIHLPGHKEYEAYRPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFIAN-- 172 : : : :::::::: :::::::: : ::::::::::::::::: d1ntfa_ 93 LDQNTLKNETIIVTV---------------DDQKKSGG-I-VTSFTIYNKRFSFTTSRMS 135 d1uf5a_ 173 ----------DRRWPEAWRVMGLRGAEIICGGYNTPTHNP-------------------P 203 :::::::::::::::::::::::::::::: d1ntfa_ 136 DEDVTSTNTKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLM- 194 d1uf5a_ 204 VPQHDHLTSFHHL--LSMQAGSYQNGAWSA-----AAGKAGMEE------N--C--MLLG 246 ::::::::: ::::::: :: :::::: : : :::: d1ntfa_ 195 ----AFDQLKKAKEQKLFDGWT------EPQVTFK---PTYKFKPNTDEYDLSATPSWTD 241 d1uf5a_ 247 HSCIVAP-TGEIVA-LTTTL--------EDEVITAAVDLDRCRELREHIFNFKQHRQPQH 296 ::::::: :::::: ::::: ::::::::::: d1ntfa_ 242 RALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL--------------------- 280 d1uf5a_ 297 YGLIAEL 303 d1ntfa_ 281 ------- 281 HHsearch alignment (Probability: 0.19 E-value:0.01) d1uf5a_ 2 RQMILAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIV--FPELALT 50 ::::::::::: :::: ::::::::::::: ::::::::: ::::::: d1ntfa_ 3 AQLSVHTVSWN-SGHE-RAPTNLEELLGLN---SGETPDVIAVAVQGFGFQ 48