Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1s3la_ | Putative phosphodiesterase MJ0936 | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
| Hit | d1ey3a_ | Enoyl-CoA hydratase (crotonase) | ClpP/crotonase | ClpP/crotonase | α/β |
Query <-- 1.956 --> IntermediateDALI alignment (Z-score: 6.1 Raw score:664.70) query 1 slqLRLALNqidstvgdiagNAEAILRWTRHSAEQGAHLVAFPEMALTgypvedlalrss 60 :::::: :::::::::::::::::::::::::::: d1s3la_ 1 ---MKIGIM------sdthdHLPNIRKAIEIFNDENVETVIHCGDFVS------------ 39 query 61 fveasrtalRELAARLaeEGFGeLPVLV---gYLDRsesaqpkygqpagaprnaaavlhR 117 ::::::: :::: ::::: :::: : d1s3la_ 40 ---------LFVIKEF--ENLN-ANIIAtygnNDGE-------------rcklkewlkdI 74 query 118 GRVALTFAkhhlpnygvfdefryfvpgdtmPIVRLHGVDIALAICEDLwqdgGRVPAAR- 176 :::::::: :::::::::::::::::: ::::::: d1s3la_ 75 NEENIIDD---------------------fISVEIDDLKFFITHGHHQ----SVLEMAIk 109 query 177 SAGAGLLLSVNASpyerdkddtrlelvrkRAQEaGCTTAYLAM-IGGQdelvfdgdsivv 235 ::::::::::::: :::: ::::::::: :::: d1s3la_ 110 SGLYDVVIYGHTH------------ervfEEVD-DVLVINPGEcCGYL------------ 144 query 236 drdgevvarapQFSEGCVVLDLDLpaaeaepptgvvddglridrlviseeplpayeaela 295 ::::::::::::: d1s3la_ 145 -----------TGIPTIGILDTEK-----------------------------------k 158 query 296 ggyadrl 302 d1s3la_ 159 eyreivl 165 FAST alignment (Normalized score: 4.01 Raw score:894.50) query 1 SLQL-RLALNQIDSTVGDIAG-----NAEAILRWTRHSAEQGAHLVAFPEMALTGYPVED 54 ::::: ::::::::::::::::::::: d1s3la_ 1 ----MKIGIM-----------SDTHDHLPNIRKAIEIFNDENVETVI------------- 32 query 55 LALRSSFVEASRT------------------------------ALRELAARLAEEGFGEL 84 ::::::::::: d1s3la_ 33 -------------HCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKD------ 73 query 85 PVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPG 144 d1s3la_ 74 ------------------------------------------------------------ 74 query 145 D--------TMPIVRLHGVDIALAICEDLWQDGGRVPAARSA-GAGLLLSVNASPYERDK 195 :::::::::::::::: :::: ::::::::: ::::::::: d1s3la_ 74 -INEENIIDDFISVEIDDLKFFITH---GHHQ-SVLEMAIKSGLYDVVIYGH-------- 120 query 196 DDTRLELVRKRAQE---------AGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAP 246 :::::::: d1s3la_ 121 --------------THERVFEEVDDVLVINP----------------------------- 137 query 247 -------QFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYA 299 :::::::::: d1s3la_ 138 GECCGYLTGIPTIGILD------------------------------------------- 154 query 300 DRL----------- 302 d1s3la_ 155 ---TEKKEYREIVL 165 TMalign alignment (TM-score: 0.40 Raw score:119.85) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 ::::::::::: :: :::::::::::::::::::::::::: d1s3la_ 1 ---MKIGIMSDTHD-----HL-PNIRKAIEIFNDENVETVIHCGDFVS------------ 39 query 61 FVEASRTALRELAARLAEEGFGELPVLVGY--LDRSE-SAQPKYGQPAGAPRNAAA-VLH 116 : :: ::: :: ::: :::::::: ::::: ::: :: d1s3la_ 40 ----L--FV-IKE-FE--NLN-ANIIATYGNNDGERCK---------------LKEW-LK 72 query 117 -RGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAA 175 ::::::::: :::::::::::::::::: :: :::::: d1s3la_ 73 DINEENIIDD---------------------FISVEIDDLKFFITHGHH-QS--VLEMAI 108 query 176 RSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAM-IGGQDELVFDGDSIV 234 :::::::::::::: :: ::: ::: ::::::::: ::: :: d1s3la_ 109 KSGLYDVVIYGHTH---------ER-VFE--EVD-DVLVINPGECCGY-----LT----- 145 query 235 VDRDGEVVARAPQFSEGCVVLDL-DLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAE 293 :::::::::: :: d1s3la_ 146 -------------GIPTIGILDTEKK---------------------------------- 158 query 294 LAGGYA-DRL 302 :::::: d1s3la_ 159 EYREIVL--- 165 HHsearch alignment (Probability: 0.38 E-value:0.00) query 4 LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAF 42 ::::::: :::::::::::::::::::::::::: d1s3la_ 1 MKIGIMS------DTHDHLPNIRKAIEIFNDENVETVIH 33
Intermediate <-- 0.696 --> HitDALI alignment (Z-score: 3.1 Raw score:319.50) d1s3la_ 1 ------------MKIGIMSD---------thdHLPNIRKAIEIFNDE-NVETVIHCG--- 35 :::::::: ::::::::::::::: ::::::::: d1ey3a_ 1 fqyiitekkgknSSVGLIQLnrpkalnalcngLIEELNQALETFEEDpAVGAIVLTGgek 60 d1s3la_ 36 dFVSL--------------------fviKEFENLNANIIATYGNNDGE-rCKLKEWlkdi 74 :::: :::::::::::::::::::: :::::: d1ey3a_ 61 aFAAGadikemqnrtfqdcysgkflshwDHITRIKKPVIAAVNGYALGggCELAMM---- 116 d1s3la_ 75 neeNIIDD---------------------------------------------------- 82 ::::: d1ey3a_ 117 --cDIIYAgekaqfgqpeillgtipgaggtqrltravgkslamemvltgdrisaqdakqa 174 d1s3la_ 83 -----------FISV------EIDDlkffithghhqsvlemaiksglydvviyghtherv 125 :::: :::: d1ey3a_ 175 glvskifpvetLVEEaiqcaeKIAN----------------nskiivamakesvnaafem 218 d1s3la_ 126 feevddvlvinpgeccgyltgiptigildtekkeyreivl 165 d1ey3a_ 219 tltegnklekklfystfatddrregmsafvekrkanfkdh 258 FAST alignment (Normalized score: 2.24 Raw score:462.00) d1s3la_ 1 ------------MKIGIMSDTHD--------------HLPNIRKAIEIFND-ENVETVIH 33 :::::: :::::::::::::: :::::::: d1ey3a_ 1 FQYIITEKKGKNSSVGLI-----QLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVL 55 d1s3la_ 34 CGDFVSL-----------------------------FVIKEFENLNANIIATYGNNDGER 64 : ::::::::::::::::::::: d1ey3a_ 56 T------GGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYA--- 106 d1s3la_ 65 CKLKEWLKDINEENIIDDFISVEIDDLKFFITHGHHQSVLEMAIKSGLYDVVIYGHTHER 124 ::::::::: d1ey3a_ 107 LGGGCELAM--------------------------------------------------- 115 d1s3la_ 125 VFEEVDDVLVINPGECCGYLTGIPTIGILDTEKKEYREIVL------------------- 165 d1ey3a_ 116 -----------------------------------------MCDIIYAGEKAQFGQPEIL 134 d1s3la_ 166 ------------------------------------------------------------ 166 d1ey3a_ 135 LGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQCA 194 d1s3la_ 166 ------------------------------------------------------------ 166 d1ey3a_ 195 EKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKAN 254 d1s3la_ 166 ---- 166 d1ey3a_ 255 FKDH 258 TMalign alignment (TM-score: 0.41 Raw score:66.84) d1s3la_ 1 -----------M-KIGIMSDT-----H-D---HLPNIRKAIEIFNDEN-VETVIHCG--- 35 : :::::::: : : :::::::::::::::: :::::::: d1ey3a_ 1 FQYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEK 60 d1s3la_ 36 -DFVSL------------------F-VIKEFENLNANIIATYGNNDGERCKLKEWLKDIN 75 ::::: : ::::::::::::::::::::::::::::::: d1ey3a_ 61 AFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYALGGGCELAMMC--- 117 d1s3la_ 76 EENIIDDFI--------------------------------------------------- 84 ::::::: d1ey3a_ 118 --DIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAG 175 d1s3la_ 85 ---SVEIDDLKFFITHGHHQSVLEMA-IKSGLYDVVIYGHTHERVFEEVDDVL-----VI 135 ::: : :: : ::::: : d1ey3a_ 176 LVS---------KIF---P--VE--TL-------VEEAI-------------QCAEKI-- 197 d1s3la_ 136 NPGECCGYLTGIPTIGILDTE--------------------------------------- 156 :: d1ey3a_ 198 -------------------ANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATD 238 d1s3la_ 157 --------------------KKEYREIVL 165 d1ey3a_ 239 DRREGMSAFVEKRKANFKDH--------- 258 HHsearch alignment (Probability: 0.01 E-value:0.24) d1s3la_ 14 PNIRKAIEIFNDE-NVETVIHCGD 36 ::::::::::::: :::::::::: d1ey3a_ 35 EELNQALETFEEDPAVGAIVLTGG 58