Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1s3la_ | Putative phosphodiesterase MJ0936 | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
| Hit | d1g8ma2 | AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC | AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC | Cytidine deaminase-like | α/β |
Query <-- 1.956 --> IntermediateDALI alignment (Z-score: 6.1 Raw score:664.70) query 1 slqLRLALNqidstvgdiagNAEAILRWTRHSAEQGAHLVAFPEMALTgypvedlalrss 60 :::::: :::::::::::::::::::::::::::: d1s3la_ 1 ---MKIGIM------sdthdHLPNIRKAIEIFNDENVETVIHCGDFVS------------ 39 query 61 fveasrtalRELAARLaeEGFGeLPVLV---gYLDRsesaqpkygqpagaprnaaavlhR 117 ::::::: :::: ::::: :::: : d1s3la_ 40 ---------LFVIKEF--ENLN-ANIIAtygnNDGE-------------rcklkewlkdI 74 query 118 GRVALTFAkhhlpnygvfdefryfvpgdtmPIVRLHGVDIALAICEDLwqdgGRVPAAR- 176 :::::::: :::::::::::::::::: ::::::: d1s3la_ 75 NEENIIDD---------------------fISVEIDDLKFFITHGHHQ----SVLEMAIk 109 query 177 SAGAGLLLSVNASpyerdkddtrlelvrkRAQEaGCTTAYLAM-IGGQdelvfdgdsivv 235 ::::::::::::: :::: ::::::::: :::: d1s3la_ 110 SGLYDVVIYGHTH------------ervfEEVD-DVLVINPGEcCGYL------------ 144 query 236 drdgevvarapQFSEGCVVLDLDLpaaeaepptgvvddglridrlviseeplpayeaela 295 ::::::::::::: d1s3la_ 145 -----------TGIPTIGILDTEK-----------------------------------k 158 query 296 ggyadrl 302 d1s3la_ 159 eyreivl 165 FAST alignment (Normalized score: 4.01 Raw score:894.50) query 1 SLQL-RLALNQIDSTVGDIAG-----NAEAILRWTRHSAEQGAHLVAFPEMALTGYPVED 54 ::::: ::::::::::::::::::::: d1s3la_ 1 ----MKIGIM-----------SDTHDHLPNIRKAIEIFNDENVETVI------------- 32 query 55 LALRSSFVEASRT------------------------------ALRELAARLAEEGFGEL 84 ::::::::::: d1s3la_ 33 -------------HCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKD------ 73 query 85 PVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPG 144 d1s3la_ 74 ------------------------------------------------------------ 74 query 145 D--------TMPIVRLHGVDIALAICEDLWQDGGRVPAARSA-GAGLLLSVNASPYERDK 195 :::::::::::::::: :::: ::::::::: ::::::::: d1s3la_ 74 -INEENIIDDFISVEIDDLKFFITH---GHHQ-SVLEMAIKSGLYDVVIYGH-------- 120 query 196 DDTRLELVRKRAQE---------AGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAP 246 :::::::: d1s3la_ 121 --------------THERVFEEVDDVLVINP----------------------------- 137 query 247 -------QFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYA 299 :::::::::: d1s3la_ 138 GECCGYLTGIPTIGILD------------------------------------------- 154 query 300 DRL----------- 302 d1s3la_ 155 ---TEKKEYREIVL 165 TMalign alignment (TM-score: 0.40 Raw score:119.85) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 ::::::::::: :: :::::::::::::::::::::::::: d1s3la_ 1 ---MKIGIMSDTHD-----HL-PNIRKAIEIFNDENVETVIHCGDFVS------------ 39 query 61 FVEASRTALRELAARLAEEGFGELPVLVGY--LDRSE-SAQPKYGQPAGAPRNAAA-VLH 116 : :: ::: :: ::: :::::::: ::::: ::: :: d1s3la_ 40 ----L--FV-IKE-FE--NLN-ANIIATYGNNDGERCK---------------LKEW-LK 72 query 117 -RGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAA 175 ::::::::: :::::::::::::::::: :: :::::: d1s3la_ 73 DINEENIIDD---------------------FISVEIDDLKFFITHGHH-QS--VLEMAI 108 query 176 RSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAM-IGGQDELVFDGDSIV 234 :::::::::::::: :: ::: ::: ::::::::: ::: :: d1s3la_ 109 KSGLYDVVIYGHTH---------ER-VFE--EVD-DVLVINPGECCGY-----LT----- 145 query 235 VDRDGEVVARAPQFSEGCVVLDL-DLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAE 293 :::::::::: :: d1s3la_ 146 -------------GIPTIGILDTEKK---------------------------------- 158 query 294 LAGGYA-DRL 302 :::::: d1s3la_ 159 EYREIVL--- 165 HHsearch alignment (Probability: 0.38 E-value:0.00) query 4 LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAF 42 ::::::: :::::::::::::::::::::::::: d1s3la_ 1 MKIGIMS------DTHDHLPNIRKAIEIFNDENVETVIH 33
Intermediate <-- 0.838 --> HitDALI alignment (Z-score: 3.8 Raw score:308.60) d1s3la_ 1 ------------------------------------------------------------ 1 d1g8ma2 1 gvsqlplrygmnphqspaqlyttrpklpltvvngspgfinlcdalnawqlvkelkqalgi 60 d1s3la_ 1 ------------------------------------------------------------ 1 d1g8ma2 61 paaasfkhvspagaavgiplseeeaqvcmvhdlhktltplasayarsrgadrmssfgdfi 120 d1s3la_ 1 ------------------------------------------------------------ 1 d1g8ma2 121 alsdicdvptakiisrevsdgvvapgyeeealkilskkknggycvlqmdpnyepddneir 180 d1s3la_ 1 -----------------------------------------------------------M 1 : d1g8ma2 181 tlyglqlmqkrnnavidrslfknivtknktlpesavrdlivasiavkytqsnsvcyakdG 240 d1s3la_ 2 KIG-imsdthdHLPNIRKAIEIFN------------------------------------ 24 ::: ::::::::::::: d1g8ma2 241 QVIgigagqqsRIHCTRLAGDKANswwlrhhprvlsmkfkagvkraevsnaidqyvtgti 300 d1s3la_ 25 -----------------------------denvETVIHC-GDFVSLFVIKEFENLNANII 54 :::::: :::::::::::::::::::: d1g8ma2 301 gededlvkwqamfeevpaqlteaekkqwiakltAVSLSSdAFFPFRDNVDRAKRIGVQFI 360 d1s3la_ 55 ATYGNnDGERCKLKEWLKDINeeNIIDDfisveiddlkffithghhqsvlemaiksglyd 114 ::::: ::::::::::::::: ::::: d1g8ma2 361 VAPSG-SAADEVVIEACNELG-iTLIHT-------------------------------- 386 d1s3la_ 115 vviygHTHErvfeevddvlvinpgeccgyltgiptigildtekkeyreivl 165 :::: d1g8ma2 387 --nlrLFHH------------------------------------------ 393 FAST alignment (Normalized score: 1.14 Raw score:289.70) d1s3la_ 1 MKIGIMSDTHD------------------------------------------HLPNIRK 18 ::::::: d1g8ma2 1 -----------GVSQLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDALNAWQ 49 d1s3la_ 19 AIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKDINEEN 78 ::::::: d1g8ma2 50 LVKELKQ----------------------------------------------------- 56 d1s3la_ 79 IIDDFISVEIDD------------------------------------------------ 90 d1g8ma2 57 ------------ALGIPAAASFKHVSPAGAAVGIPLSEEEAQVCMVHDLHKTLTPLASAY 104 d1s3la_ 91 ------------------------------------------------------------ 91 d1g8ma2 105 ARSRGADRMSSFGDFIALSDICDVPTAKIISREVSDGVVAPGYEEEALKILSKKKNGGYC 164 d1s3la_ 91 ------------------------------------------------------------ 91 d1g8ma2 165 VLQMDPNYEPDDNEIRTLYGLQLMQKRNNAVIDRSLFKNIVTKNKTLPESAVRDLIVASI 224 d1s3la_ 91 ------------------------------------------------------------ 91 d1g8ma2 225 AVKYTQSNSVCYAKDGQVIGIGAGQQSRIHCTRLAGDKANSWWLRHHPRVLSMKFKAGVK 284 d1s3la_ 91 -------------------------------------------------LKFFIT--HGH 99 :::::: ::: d1g8ma2 285 RAEVSNAIDQYVTGTIGEDEDLVKWQAMFEEVPAQLTEAEKKQWIAKLTAVSLSSDAFFP 344 d1s3la_ 100 HQSVLEMAIKSGLYDVVIYGHTHERVFE------------EVDDVLVINPGECCGYLTGI 147 :::::::::: :::::::::: ::::::::: d1g8ma2 345 FRDNVDRAKR-IGVQFIVAPS-------GSAADEVVIEACNELGITLIH----------- 385 d1s3la_ 148 PTIGILDTEKKEYREIVL-------- 165 d1g8ma2 386 ------------------TNLRLFHH 393 TMalign alignment (TM-score: 0.48 Raw score:78.40) d1s3la_ 1 ------------------------------------------------------------ 1 d1g8ma2 1 GVSQLPLRYGMNPHQSPAQLYTTRPKLPLTVVNGSPGFINLCDALNAWQLVKELKQALGI 60 d1s3la_ 1 -------MKIG-IMSDTH-------------------DH-LPNIRKAIEIFNDENVETVI 32 :::: :::::: :: :::::::::::::::::::: d1g8ma2 61 PAAASFKHVSPAGAAVGIPLSEEEAQVCMVHDLHKTLTPLASAYARSRGADRMSSFGDFI 120 d1s3la_ 33 HCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKDIN--EENIIDDFISVEIDD 90 ::::::::::::::::::::::::: ::: ::::::::::: :::::::: d1g8ma2 121 ALSDICDVPTAKIISREVSDGVVAP---GYE-EEALKILSKKKNGGYCVLQMD------- 169 d1s3la_ 91 LKFFITHGHHQSVLEMAIKSGLYD------VVIYGHTHERVFEEVDDVLVINPG------ 138 : : :::: :: :::: :::::::::: d1g8ma2 170 ------P-N---YEPD-DN-EIRTLYGLQL--------------MQKRNNAVIDRSLFKN 203 d1s3la_ 139 ---------ECCGYLTG--IP--TI--GI-LDTEKKE-YREIV---L------------- 165 :: :: :: :: :: :: ::::: : d1g8ma2 204 IVTKNKTLP------ESAVRDLIVASIAVKYT---QSNSVCYAKDGQVIGIGAGQQSRIH 254 d1s3la_ 166 ------------------------------------------------------------ 166 d1g8ma2 255 CTRLAGDKANSWWLRHHPRVLSMKFKAGVKRAEVSNAIDQYVTGTIGEDEDLVKWQAMFE 314 d1s3la_ 166 ------------------------------------------------------------ 166 d1g8ma2 315 EVPAQLTEAEKKQWIAKLTAVSLSSDAFFPFRDNVDRAKRIGVQFIVAPSGSAADEVVIE 374 d1s3la_ 166 ------------------- 166 d1g8ma2 375 ACNELGITLIHTNLRLFHH 393 HHsearch alignment (Probability: 0.03 E-value:0.12) d1s3la_ 113 YDVVIYGHTHERVFEEVDDVLVINPG 138 :::::::::::::::::::::::::: d1g8ma2 221 VASIAVKYTQSNSVCYAKDGQVIGIG 246