Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1s3la_ | Putative phosphodiesterase MJ0936 | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
| Hit | d1s8na_ | Probable two-component system transcriptional regulator Rv1626 | CheY-like | Flavodoxin-like | α/β |
Query <-- 1.956 --> IntermediateDALI alignment (Z-score: 6.1 Raw score:664.70) query 1 slqLRLALNqidstvgdiagNAEAILRWTRHSAEQGAHLVAFPEMALTgypvedlalrss 60 :::::: :::::::::::::::::::::::::::: d1s3la_ 1 ---MKIGIM------sdthdHLPNIRKAIEIFNDENVETVIHCGDFVS------------ 39 query 61 fveasrtalRELAARLaeEGFGeLPVLV---gYLDRsesaqpkygqpagaprnaaavlhR 117 ::::::: :::: ::::: :::: : d1s3la_ 40 ---------LFVIKEF--ENLN-ANIIAtygnNDGE-------------rcklkewlkdI 74 query 118 GRVALTFAkhhlpnygvfdefryfvpgdtmPIVRLHGVDIALAICEDLwqdgGRVPAAR- 176 :::::::: :::::::::::::::::: ::::::: d1s3la_ 75 NEENIIDD---------------------fISVEIDDLKFFITHGHHQ----SVLEMAIk 109 query 177 SAGAGLLLSVNASpyerdkddtrlelvrkRAQEaGCTTAYLAM-IGGQdelvfdgdsivv 235 ::::::::::::: :::: ::::::::: :::: d1s3la_ 110 SGLYDVVIYGHTH------------ervfEEVD-DVLVINPGEcCGYL------------ 144 query 236 drdgevvarapQFSEGCVVLDLDLpaaeaepptgvvddglridrlviseeplpayeaela 295 ::::::::::::: d1s3la_ 145 -----------TGIPTIGILDTEK-----------------------------------k 158 query 296 ggyadrl 302 d1s3la_ 159 eyreivl 165 FAST alignment (Normalized score: 4.01 Raw score:894.50) query 1 SLQL-RLALNQIDSTVGDIAG-----NAEAILRWTRHSAEQGAHLVAFPEMALTGYPVED 54 ::::: ::::::::::::::::::::: d1s3la_ 1 ----MKIGIM-----------SDTHDHLPNIRKAIEIFNDENVETVI------------- 32 query 55 LALRSSFVEASRT------------------------------ALRELAARLAEEGFGEL 84 ::::::::::: d1s3la_ 33 -------------HCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKD------ 73 query 85 PVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPG 144 d1s3la_ 74 ------------------------------------------------------------ 74 query 145 D--------TMPIVRLHGVDIALAICEDLWQDGGRVPAARSA-GAGLLLSVNASPYERDK 195 :::::::::::::::: :::: ::::::::: ::::::::: d1s3la_ 74 -INEENIIDDFISVEIDDLKFFITH---GHHQ-SVLEMAIKSGLYDVVIYGH-------- 120 query 196 DDTRLELVRKRAQE---------AGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAP 246 :::::::: d1s3la_ 121 --------------THERVFEEVDDVLVINP----------------------------- 137 query 247 -------QFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYA 299 :::::::::: d1s3la_ 138 GECCGYLTGIPTIGILD------------------------------------------- 154 query 300 DRL----------- 302 d1s3la_ 155 ---TEKKEYREIVL 165 TMalign alignment (TM-score: 0.40 Raw score:119.85) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 ::::::::::: :: :::::::::::::::::::::::::: d1s3la_ 1 ---MKIGIMSDTHD-----HL-PNIRKAIEIFNDENVETVIHCGDFVS------------ 39 query 61 FVEASRTALRELAARLAEEGFGELPVLVGY--LDRSE-SAQPKYGQPAGAPRNAAA-VLH 116 : :: ::: :: ::: :::::::: ::::: ::: :: d1s3la_ 40 ----L--FV-IKE-FE--NLN-ANIIATYGNNDGERCK---------------LKEW-LK 72 query 117 -RGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAA 175 ::::::::: :::::::::::::::::: :: :::::: d1s3la_ 73 DINEENIIDD---------------------FISVEIDDLKFFITHGHH-QS--VLEMAI 108 query 176 RSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAM-IGGQDELVFDGDSIV 234 :::::::::::::: :: ::: ::: ::::::::: ::: :: d1s3la_ 109 KSGLYDVVIYGHTH---------ER-VFE--EVD-DVLVINPGECCGY-----LT----- 145 query 235 VDRDGEVVARAPQFSEGCVVLDL-DLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAE 293 :::::::::: :: d1s3la_ 146 -------------GIPTIGILDTEKK---------------------------------- 158 query 294 LAGGYA-DRL 302 :::::: d1s3la_ 159 EYREIVL--- 165 HHsearch alignment (Probability: 0.38 E-value:0.00) query 4 LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAF 42 ::::::: :::::::::::::::::::::::::: d1s3la_ 1 MKIGIMS------DTHDHLPNIRKAIEIFNDENVETVIH 33
Intermediate <-- 1.025 --> HitDALI alignment (Z-score: 3.8 Raw score:282.90) d1s3la_ 1 ---MKIGIMSD------------------thdhlpNIRKAIEIFNDENVETVIHCGDFvs 39 :::::::: ::::::::::::::::::::::: d1s8na_ 1 avpRRVLIAEDealirmdlaemlreegyeivgeagDGQEAVELAELHKPDLVIMDVKMpr 60 d1s3la_ 40 lfvIKEFENL----NANIIATYgnnDGERCKLKEWLKDINeENIIDD------FISVeid 89 ::::::: :::::::: ::::::::::::::: :::::: :::: d1s8na_ 61 rdgIDAASEIaskrIAPIVVLT---AFSQRDLVERARDAG-AMAYLVkpfsisDLIP--a 114 d1s3la_ 90 dlkffithghhqsvlemaiksglydvviyghthervfeevddvlvinpgeccgyltgipt 149 d1s8na_ 115 ielavsrfreitalegevatlserletrklverakgllqtkhgmtepdafkwiqraamdr 174 d1s3la_ 150 igildtekkeyreivl 165 d1s8na_ 175 rttmkrvaevvletlg 190 FAST alignment (Normalized score: 2.29 Raw score:405.40) d1s3la_ 1 M----KIGIMSDTHDHLP--------------------------NIRKAIEIFNDENVET 30 ::::: :::::::::::::::: d1s8na_ 1 -AVPRRVLIA--------EDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDL 51 d1s3la_ 31 VIHCGDFVSL------FVIKEFENL-----NANIIATYGNNDGERCKLKEWLKDINEENI 79 :::: :::::::: :::::::::: :::::::: :::: :::: d1s8na_ 52 VIMD------VKMPRRDGIDAASE-IASKRIAPIVVLTAF--SQRDLVER-ARDA-GAMA 100 d1s3la_ 80 IDDFISVEIDDLKFFITHGHHQSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPGE 139 :: d1s8na_ 101 YL---------------------------------------------------------- 102 d1s3la_ 140 CCGYLTGIPTIGILDTEKKEYREIVL---------------------------------- 165 d1s8na_ 103 --------------------------VKPFSISDLIPAIELAVSRFREITALEGEVATLS 136 d1s3la_ 166 ------------------------------------------------------ 166 d1s8na_ 137 ERLETRKLVERAKGLLQTKHGMTEPDAFKWIQRAAMDRRTTMKRVAEVVLETLG 190 TMalign alignment (TM-score: 0.37 Raw score:61.36) d1s3la_ 1 ---MKIGIMSDT----------------------HDHLPNIRKAIEIFNDENVETVIHCG 35 ::::::::: :::::::::::::::::::: : d1s8na_ 1 AVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEA----GDGQEAVELAELHKPDLVIM-D 55 d1s3la_ 36 DFVS-LFV-IKEFENL----NANIIATYGNNDGERCKLKEWLKDINEENIIDD-F---IS 85 :::: :: ::::::: ::::::::: : :::::::::::::::::::: : :: d1s8na_ 56 VKMPR-RDGIDAASEIASKRIAPIVVLTA--F-SQRDLVERARDAGAMAYLVKPFSISDL 111 d1s3la_ 86 VE-ID------------------------------------------------------- 89 :: :: d1s8na_ 112 IPAIELAVSRFREITALEGEVATLSERLETRKLVERAKGLLQTKHGMTEPDAFKWIQRAA 171 d1s3la_ 90 -------------------DLKFFITHGHHQSVLEMAIKSGLYDVVIYGHTHERVFEEVD 130 d1s8na_ 172 MDRRTTMKRVAEVVLETLG----------------------------------------- 190 d1s3la_ 131 DVLVINPGECCGYLTGIPTIGILDTEKKEYREIVL 165 d1s8na_ 191 ----------------------------------- 191 HHsearch alignment (Probability: 0.10 E-value:0.01) d1s3la_ 17 RKAIEIFNDENVETVIHCGDFVSL---FVIKEFE-NLNANIIATYGNND 61 :::::::::::::::::::::::: ::::::: :::::::::::::: d1s8na_ 38 QEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQ 86