Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1s3la_ | Putative phosphodiesterase MJ0936 | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
| Hit | d1t57a_ | Hypothetical protein MTH1675 | PK C-terminal domain-like | Pyruvate kinase C-terminal domain-like | α/β |
Query <-- 1.956 --> IntermediateDALI alignment (Z-score: 6.1 Raw score:664.70) query 1 slqLRLALNqidstvgdiagNAEAILRWTRHSAEQGAHLVAFPEMALTgypvedlalrss 60 :::::: :::::::::::::::::::::::::::: d1s3la_ 1 ---MKIGIM------sdthdHLPNIRKAIEIFNDENVETVIHCGDFVS------------ 39 query 61 fveasrtalRELAARLaeEGFGeLPVLV---gYLDRsesaqpkygqpagaprnaaavlhR 117 ::::::: :::: ::::: :::: : d1s3la_ 40 ---------LFVIKEF--ENLN-ANIIAtygnNDGE-------------rcklkewlkdI 74 query 118 GRVALTFAkhhlpnygvfdefryfvpgdtmPIVRLHGVDIALAICEDLwqdgGRVPAAR- 176 :::::::: :::::::::::::::::: ::::::: d1s3la_ 75 NEENIIDD---------------------fISVEIDDLKFFITHGHHQ----SVLEMAIk 109 query 177 SAGAGLLLSVNASpyerdkddtrlelvrkRAQEaGCTTAYLAM-IGGQdelvfdgdsivv 235 ::::::::::::: :::: ::::::::: :::: d1s3la_ 110 SGLYDVVIYGHTH------------ervfEEVD-DVLVINPGEcCGYL------------ 144 query 236 drdgevvarapQFSEGCVVLDLDLpaaeaepptgvvddglridrlviseeplpayeaela 295 ::::::::::::: d1s3la_ 145 -----------TGIPTIGILDTEK-----------------------------------k 158 query 296 ggyadrl 302 d1s3la_ 159 eyreivl 165 FAST alignment (Normalized score: 4.01 Raw score:894.50) query 1 SLQL-RLALNQIDSTVGDIAG-----NAEAILRWTRHSAEQGAHLVAFPEMALTGYPVED 54 ::::: ::::::::::::::::::::: d1s3la_ 1 ----MKIGIM-----------SDTHDHLPNIRKAIEIFNDENVETVI------------- 32 query 55 LALRSSFVEASRT------------------------------ALRELAARLAEEGFGEL 84 ::::::::::: d1s3la_ 33 -------------HCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKD------ 73 query 85 PVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPG 144 d1s3la_ 74 ------------------------------------------------------------ 74 query 145 D--------TMPIVRLHGVDIALAICEDLWQDGGRVPAARSA-GAGLLLSVNASPYERDK 195 :::::::::::::::: :::: ::::::::: ::::::::: d1s3la_ 74 -INEENIIDDFISVEIDDLKFFITH---GHHQ-SVLEMAIKSGLYDVVIYGH-------- 120 query 196 DDTRLELVRKRAQE---------AGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAP 246 :::::::: d1s3la_ 121 --------------THERVFEEVDDVLVINP----------------------------- 137 query 247 -------QFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYA 299 :::::::::: d1s3la_ 138 GECCGYLTGIPTIGILD------------------------------------------- 154 query 300 DRL----------- 302 d1s3la_ 155 ---TEKKEYREIVL 165 TMalign alignment (TM-score: 0.40 Raw score:119.85) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 ::::::::::: :: :::::::::::::::::::::::::: d1s3la_ 1 ---MKIGIMSDTHD-----HL-PNIRKAIEIFNDENVETVIHCGDFVS------------ 39 query 61 FVEASRTALRELAARLAEEGFGELPVLVGY--LDRSE-SAQPKYGQPAGAPRNAAA-VLH 116 : :: ::: :: ::: :::::::: ::::: ::: :: d1s3la_ 40 ----L--FV-IKE-FE--NLN-ANIIATYGNNDGERCK---------------LKEW-LK 72 query 117 -RGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAA 175 ::::::::: :::::::::::::::::: :: :::::: d1s3la_ 73 DINEENIIDD---------------------FISVEIDDLKFFITHGHH-QS--VLEMAI 108 query 176 RSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAM-IGGQDELVFDGDSIV 234 :::::::::::::: :: ::: ::: ::::::::: ::: :: d1s3la_ 109 KSGLYDVVIYGHTH---------ER-VFE--EVD-DVLVINPGECCGY-----LT----- 145 query 235 VDRDGEVVARAPQFSEGCVVLDL-DLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAE 293 :::::::::: :: d1s3la_ 146 -------------GIPTIGILDTEKK---------------------------------- 158 query 294 LAGGYA-DRL 302 :::::: d1s3la_ 159 EYREIVL--- 165 HHsearch alignment (Probability: 0.38 E-value:0.00) query 4 LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAF 42 ::::::: :::::::::::::::::::::::::: d1s3la_ 1 MKIGIMS------DTHDHLPNIRKAIEIFNDENVETVIH 33
Intermediate <-- 1.192 --> HitDALI alignment (Z-score: 4.4 Raw score:346.30) d1s3la_ 1 ----mkigimsdthdHLPNIRKAIEIFNDENVETVIHCgdFVSLFV-IKEFENLNANIIA 55 ::::::::::::::::::::::: :::::: ::::::::::::: d1t57a_ 1 mekkicyfeepgkenTERVLELVGERADQLGIRNFVVA--SVSGETaLRLSEMVEGNIVS 58 d1s3la_ 56 TYGNN-------dGERCKLKEWLKDINeeNIIDD---fisveiddlkffithghhqsvle 105 ::::: :::::::::::::: ::::: d1t57a_ 59 VTHHAgfrekgqlELEDEARDALLERG--VNVYAgshalsgvgrgisnrfggvtpveima 116 d1s3la_ 106 maiksglydvviyghthervfeevddvlvinpgeccgyltgiPTIGILDTE------KKE 159 ::::::::: ::: d1t57a_ 117 etlrmvsqgfkvcveiaimaadaglipvdeeviaiggtawgaDTALVLTPAhmnsvfDLR 176 d1s3la_ 160 YR-EIVL--- 165 :: :::: d1t57a_ 177 IHeVIAMprp 186 FAST alignment (Normalized score: 3.19 Raw score:559.10) d1s3la_ 1 MKIGIMSDTHD---------------HLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKE 45 ::::::::::::::::::::::: ::::::::: d1t57a_ 1 -----------MEKKICYFEEPGKENTERVLELVGERADQLGIRNFVVA--SVSGETALR 47 d1s3la_ 46 -FENLNANIIATYGNNDGE-------------RCKLKEWLKDINEENIIDDFISVEIDDL 91 :::::::::::: :::::::::: :::::: d1t57a_ 48 LSEMVEGNIVSVT------HHAGFREKGQLELEDEARDALLE--RGVNVY---------- 89 d1s3la_ 92 KFFITHGHHQSVLEMAIKSGLYDVVIYGHTHERVFEEVDDVLVINPGECCGYLTGI---- 147 d1t57a_ 90 --------------------------------------------------------AGSH 93 d1s3la_ 148 ------------------------------------------------------------ 148 d1t57a_ 94 ALSGVGRGISNRFGGVTPVEIMAETLRMVSQGFKVCVEIAIMAADAGLIPVDEEVIAIGG 153 d1s3la_ 148 -----PTIGILDTEKKEYREIVL--------------------- 165 ::::::: d1t57a_ 154 TAWGADTALVLT-----------PAHMNSVFDLRIHEVIAMPRP 186 TMalign alignment (TM-score: 0.48 Raw score:79.96) d1s3la_ 1 ----------MKIGIMSDTHD-HLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENL 49 :::: ::::::::::::::::::::::::: :::::::::::: d1t57a_ 1 MEKKICYFEE-------PGKENTERVLELVGERADQLGIRNFVVASV-SGETALRLSEMV 52 d1s3la_ 50 NANIIATYG---NN----DGERCKLKEWLKDINEENIIDDFISVEIDDLKFFITHGHHQS 102 ::::::::: :: ::::::::::::::: ::::::: ::::::: d1t57a_ 53 EGNIVSVTHHAGFREKGQLELEDEARDALLERG--VNVYAGS-----------HALSGVG 99 d1s3la_ 103 VL-------EM-AI------KSGLYDVVIYGH--THERVFEEVDDVLVIN---------- 136 :: :: : :: :::::: ::: d1t57a_ 100 RGISNRFGGVTP-VEIMAET----------LRMVSQGFKV-------CVEIAIMAADAGL 141 d1s3la_ 137 --------PGECCGY-LTGIPTIGILDTE------KKEYREIVL---- 165 ::::::: :::::::::: ::::::::: d1t57a_ 142 IPVDEEVIAIGGTAWG---ADTALVLTPAHMNSVFDLRIHEVIAMPRP 186 HHsearch alignment (Probability: 0.02 E-value:0.30) d1s3la_ 12 HLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIATY 57 ::::::::::::::::::::::::: :::::::::::::::::::: d1t57a_ 16 TERVLELVGERADQLGIRNFVVASV-SGETALRLSEMVEGNIVSVT 60