Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1s3la_ | Putative phosphodiesterase MJ0936 | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
| Hit | d1jk7a_ | Protein phosphatase-1 (PP-1) | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
Query <-- 1.956 --> IntermediateDALI alignment (Z-score: 6.1 Raw score:664.70) query 1 slqLRLALNqidstvgdiagNAEAILRWTRHSAEQGAHLVAFPEMALTgypvedlalrss 60 :::::: :::::::::::::::::::::::::::: d1s3la_ 1 ---MKIGIM------sdthdHLPNIRKAIEIFNDENVETVIHCGDFVS------------ 39 query 61 fveasrtalRELAARLaeEGFGeLPVLV---gYLDRsesaqpkygqpagaprnaaavlhR 117 ::::::: :::: ::::: :::: : d1s3la_ 40 ---------LFVIKEF--ENLN-ANIIAtygnNDGE-------------rcklkewlkdI 74 query 118 GRVALTFAkhhlpnygvfdefryfvpgdtmPIVRLHGVDIALAICEDLwqdgGRVPAAR- 176 :::::::: :::::::::::::::::: ::::::: d1s3la_ 75 NEENIIDD---------------------fISVEIDDLKFFITHGHHQ----SVLEMAIk 109 query 177 SAGAGLLLSVNASpyerdkddtrlelvrkRAQEaGCTTAYLAM-IGGQdelvfdgdsivv 235 ::::::::::::: :::: ::::::::: :::: d1s3la_ 110 SGLYDVVIYGHTH------------ervfEEVD-DVLVINPGEcCGYL------------ 144 query 236 drdgevvarapQFSEGCVVLDLDLpaaeaepptgvvddglridrlviseeplpayeaela 295 ::::::::::::: d1s3la_ 145 -----------TGIPTIGILDTEK-----------------------------------k 158 query 296 ggyadrl 302 d1s3la_ 159 eyreivl 165 FAST alignment (Normalized score: 4.01 Raw score:894.50) query 1 SLQL-RLALNQIDSTVGDIAG-----NAEAILRWTRHSAEQGAHLVAFPEMALTGYPVED 54 ::::: ::::::::::::::::::::: d1s3la_ 1 ----MKIGIM-----------SDTHDHLPNIRKAIEIFNDENVETVI------------- 32 query 55 LALRSSFVEASRT------------------------------ALRELAARLAEEGFGEL 84 ::::::::::: d1s3la_ 33 -------------HCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKD------ 73 query 85 PVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPG 144 d1s3la_ 74 ------------------------------------------------------------ 74 query 145 D--------TMPIVRLHGVDIALAICEDLWQDGGRVPAARSA-GAGLLLSVNASPYERDK 195 :::::::::::::::: :::: ::::::::: ::::::::: d1s3la_ 74 -INEENIIDDFISVEIDDLKFFITH---GHHQ-SVLEMAIKSGLYDVVIYGH-------- 120 query 196 DDTRLELVRKRAQE---------AGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAP 246 :::::::: d1s3la_ 121 --------------THERVFEEVDDVLVINP----------------------------- 137 query 247 -------QFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYA 299 :::::::::: d1s3la_ 138 GECCGYLTGIPTIGILD------------------------------------------- 154 query 300 DRL----------- 302 d1s3la_ 155 ---TEKKEYREIVL 165 TMalign alignment (TM-score: 0.40 Raw score:119.85) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 ::::::::::: :: :::::::::::::::::::::::::: d1s3la_ 1 ---MKIGIMSDTHD-----HL-PNIRKAIEIFNDENVETVIHCGDFVS------------ 39 query 61 FVEASRTALRELAARLAEEGFGELPVLVGY--LDRSE-SAQPKYGQPAGAPRNAAA-VLH 116 : :: ::: :: ::: :::::::: ::::: ::: :: d1s3la_ 40 ----L--FV-IKE-FE--NLN-ANIIATYGNNDGERCK---------------LKEW-LK 72 query 117 -RGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAA 175 ::::::::: :::::::::::::::::: :: :::::: d1s3la_ 73 DINEENIIDD---------------------FISVEIDDLKFFITHGHH-QS--VLEMAI 108 query 176 RSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAM-IGGQDELVFDGDSIV 234 :::::::::::::: :: ::: ::: ::::::::: ::: :: d1s3la_ 109 KSGLYDVVIYGHTH---------ER-VFE--EVD-DVLVINPGECCGY-----LT----- 145 query 235 VDRDGEVVARAPQFSEGCVVLDL-DLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAE 293 :::::::::: :: d1s3la_ 146 -------------GIPTIGILDTEKK---------------------------------- 158 query 294 LAGGYA-DRL 302 :::::: d1s3la_ 159 EYREIVL--- 165 HHsearch alignment (Probability: 0.38 E-value:0.00) query 4 LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAF 42 ::::::: :::::::::::::::::::::::::: d1s3la_ 1 MKIGIMS------DTHDHLPNIRKAIEIFNDENVETVIH 33
Intermediate <-- 2.191 --> HitDALI alignment (Z-score: 9.9 Raw score:948.20) d1s3la_ 1 ---------------------------------------------------MKIGIMSDT 9 ::::::::: d1jk7a_ 1 klnidsiiqrllevrgskpgknvqlqeneirglclksreiflsqpilleleAPLKICGDI 60 d1s3la_ 10 HDHLPNIRKAIEIFN-DENVeTVIHCGDFV-----SLFVIKEF-ENLN---aNIIATYGN 59 ::::::::::::::: :::: ::::::::: :::::::: :::: :::::::: d1jk7a_ 61 HGQYYDLLRLFEYGGfPPES-NYLFLGDYVdrgkqSLETICLLlAYKIkypeNFFLLRGN 119 d1s3la_ 60 NDG------------------------ERCKLKEwlkdineeniIDDFISVEiddLKFFI 95 ::: ::::::: :::::::: ::::: d1jk7a_ 120 HECasinriygfydeckrryniklwktFTDCFNC----------LPIAAIVD---EKIFC 166 d1s3la_ 96 THG-------------------------------HHQS------------------vleM 106 ::: :::: : d1jk7a_ 167 CHGglspdlqsmeqirrimrptdvpdqgllcdllWSDPdkdvlgwgendrgvsftfgaeV 226 d1s3la_ 107 AIKSG---LYDVVIYGHTHE---RVFEEVddvLVINPGeCCGYL----TGIPTIGILDtE 156 ::::: :::::::::::: :::::: :::::: ::::: :::::::::: : d1jk7a_ 227 VAKFLhkhDLDLICRAHQVVedgYEFFAK--rQLVTLF-SAPNYcgefDNAGAMMSVD-E 282 d1s3la_ 157 KKEYREIVL--- 165 ::::::::: d1jk7a_ 283 TLMCSFQILkpa 294 FAST alignment (Normalized score: 6.47 Raw score:1424.00) d1s3la_ 1 M----------------------------------------------------KIGIMSD 8 ::::::: d1jk7a_ 1 -KLNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGD 59 d1s3la_ 9 THDHLPNIRKAIEIFNDENV------ETVIHCGDFV-------SLFVIKEFENLNA---- 51 :::::::::::::: :::::::: ::::::::: d1jk7a_ 60 IHGQYYDLLRLFEY------GGFPPESNYLFLGD--YVDRGKQSLETICLLL----AYKI 107 d1s3la_ 52 ----NIIATYGNNDGE-----------------------RCKLKEWLKDINEENI---ID 81 ::::::::: ::::::: :: d1jk7a_ 108 KYPENFFLLRGNH---ECASINRIYGFYDECKRRYNIKLWKTFTDC---------FNCLP 155 d1s3la_ 82 DFISVEIDDLKFFITHG------------------------------------------- 98 ::: ::: :::::: d1jk7a_ 156 IAA--IVD-EKIFCC--HGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVLG 210 d1s3la_ 99 -----------HHQSVLEMAIKSGLYDVVIYGHTHERVFEEVDDV--------------L 133 ::::::::::::::::::::: : d1jk7a_ 211 WGENDRGVSFTFGAEVVAKFLHKHDLDLICRA-------------HQVVEDGYEFFAKRQ 257 d1s3la_ 134 VINPGECCGYLT-------GIPTIGILDTEKKEYREIVL----- 165 ::: ::::: :::::::: ::::::::: d1jk7a_ 258 LVT-LFSAP---NYCGEFDNAGAMMSV-DETLMCSFQ--ILKPA 294 TMalign alignment (TM-score: 0.68 Raw score:112.48) d1s3la_ 1 ---------------------------------------------------MKIGIMSDT 9 ::::::::: d1jk7a_ 1 KLNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDI 60 d1s3la_ 10 HDHLPNIRKAIEIFNDE-NVETVIHCGDFVS----LF-VIKEF-ENL--N--ANIIATYG 58 ::::::::::::::::: ::::: ::::::: :: ::::: ::: : :::::::: d1jk7a_ 61 HGQYYDLLRLFEYGGFPPESNYL-FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGN 119 d1s3la_ 59 NND---G--------------------ERCKLKEWLKDINEENIIDDFISVEIDDLKFFI 95 ::: : ::::::: ::: : :::::::::: d1jk7a_ 120 HECASINRIYGFYDECKRRYNIKLWKTFTDCFNC---------LPI--A-AIVDEKIFCC 167 d1s3la_ 96 THG------------------------------HH-Q------S---------VLE--MA 107 ::: :: : : ::: :: d1jk7a_ 168 HGGLSPDLQSMEQIRRIMRPTDVPDQGLLCDLLWSDPDKDVLGWGENDRGVSFTFGAEVV 227 d1s3la_ 108 IKS-G-L-YDVVIYG-HTHE--RVFEEVDDVLVINPGECCGY--LTGIPTIGILDT-EKK 158 ::: : : ::::::: :::: ::::::: : :::::::::: :::::::::::: ::: d1jk7a_ 228 AKFLHKHDLDLICRAHQVVEDGYEFFAKR-Q-LVTLFSAPNYCGEFDNAGAMMSVDETLM 285 d1s3la_ 159 EYREIVL-- 165 ::::::: d1jk7a_ 286 CSFQILKPA 294 HHsearch alignment (Probability: 0.99 E-value:0.00) d1s3la_ 2 KIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLF-----VIKEFENLN----AN 52 :::::::::::::::::::::::::::::::::::::::: ::::::::: :: d1jk7a_ 53 PLKICGDIHGQYYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPEN 112 d1s3la_ 53 IIATYGNNDGE 63 ::::::::::: d1jk7a_ 113 FFLLRGNHECA 123