Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1s3la_ | Putative phosphodiesterase MJ0936 | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
| Hit | d1s95a_ | Serine/threonine protein phosphatase 5, PP5 | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
Query <-- 1.956 --> IntermediateDALI alignment (Z-score: 6.1 Raw score:664.70) query 1 slqLRLALNqidstvgdiagNAEAILRWTRHSAEQGAHLVAFPEMALTgypvedlalrss 60 :::::: :::::::::::::::::::::::::::: d1s3la_ 1 ---MKIGIM------sdthdHLPNIRKAIEIFNDENVETVIHCGDFVS------------ 39 query 61 fveasrtalRELAARLaeEGFGeLPVLV---gYLDRsesaqpkygqpagaprnaaavlhR 117 ::::::: :::: ::::: :::: : d1s3la_ 40 ---------LFVIKEF--ENLN-ANIIAtygnNDGE-------------rcklkewlkdI 74 query 118 GRVALTFAkhhlpnygvfdefryfvpgdtmPIVRLHGVDIALAICEDLwqdgGRVPAAR- 176 :::::::: :::::::::::::::::: ::::::: d1s3la_ 75 NEENIIDD---------------------fISVEIDDLKFFITHGHHQ----SVLEMAIk 109 query 177 SAGAGLLLSVNASpyerdkddtrlelvrkRAQEaGCTTAYLAM-IGGQdelvfdgdsivv 235 ::::::::::::: :::: ::::::::: :::: d1s3la_ 110 SGLYDVVIYGHTH------------ervfEEVD-DVLVINPGEcCGYL------------ 144 query 236 drdgevvarapQFSEGCVVLDLDLpaaeaepptgvvddglridrlviseeplpayeaela 295 ::::::::::::: d1s3la_ 145 -----------TGIPTIGILDTEK-----------------------------------k 158 query 296 ggyadrl 302 d1s3la_ 159 eyreivl 165 FAST alignment (Normalized score: 4.01 Raw score:894.50) query 1 SLQL-RLALNQIDSTVGDIAG-----NAEAILRWTRHSAEQGAHLVAFPEMALTGYPVED 54 ::::: ::::::::::::::::::::: d1s3la_ 1 ----MKIGIM-----------SDTHDHLPNIRKAIEIFNDENVETVI------------- 32 query 55 LALRSSFVEASRT------------------------------ALRELAARLAEEGFGEL 84 ::::::::::: d1s3la_ 33 -------------HCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKD------ 73 query 85 PVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPG 144 d1s3la_ 74 ------------------------------------------------------------ 74 query 145 D--------TMPIVRLHGVDIALAICEDLWQDGGRVPAARSA-GAGLLLSVNASPYERDK 195 :::::::::::::::: :::: ::::::::: ::::::::: d1s3la_ 74 -INEENIIDDFISVEIDDLKFFITH---GHHQ-SVLEMAIKSGLYDVVIYGH-------- 120 query 196 DDTRLELVRKRAQE---------AGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAP 246 :::::::: d1s3la_ 121 --------------THERVFEEVDDVLVINP----------------------------- 137 query 247 -------QFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYA 299 :::::::::: d1s3la_ 138 GECCGYLTGIPTIGILD------------------------------------------- 154 query 300 DRL----------- 302 d1s3la_ 155 ---TEKKEYREIVL 165 TMalign alignment (TM-score: 0.40 Raw score:119.85) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 ::::::::::: :: :::::::::::::::::::::::::: d1s3la_ 1 ---MKIGIMSDTHD-----HL-PNIRKAIEIFNDENVETVIHCGDFVS------------ 39 query 61 FVEASRTALRELAARLAEEGFGELPVLVGY--LDRSE-SAQPKYGQPAGAPRNAAA-VLH 116 : :: ::: :: ::: :::::::: ::::: ::: :: d1s3la_ 40 ----L--FV-IKE-FE--NLN-ANIIATYGNNDGERCK---------------LKEW-LK 72 query 117 -RGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAA 175 ::::::::: :::::::::::::::::: :: :::::: d1s3la_ 73 DINEENIIDD---------------------FISVEIDDLKFFITHGHH-QS--VLEMAI 108 query 176 RSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAM-IGGQDELVFDGDSIV 234 :::::::::::::: :: ::: ::: ::::::::: ::: :: d1s3la_ 109 KSGLYDVVIYGHTH---------ER-VFE--EVD-DVLVINPGECCGY-----LT----- 145 query 235 VDRDGEVVARAPQFSEGCVVLDL-DLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAE 293 :::::::::: :: d1s3la_ 146 -------------GIPTIGILDTEKK---------------------------------- 158 query 294 LAGGYA-DRL 302 :::::: d1s3la_ 159 EYREIVL--- 165 HHsearch alignment (Probability: 0.38 E-value:0.00) query 4 LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAF 42 ::::::: :::::::::::::::::::::::::: d1s3la_ 1 MKIGIMS------DTHDHLPNIRKAIEIFNDENVETVIH 33
Intermediate <-- 2.260 --> HitDALI alignment (Z-score: 9.5 Raw score:931.50) d1s3la_ 1 -----------------------------------------------------------M 1 : d1s95a_ 1 ysgpkledgkvtisfmkelmqwykdqkklhrkcayqilvqvkevlsklstlvettlketE 60 d1s3la_ 2 KIGIMSDTHDHLPNIRKAIEIFND-enVETVIHCGDFV-----SLFVIKEFENL----na 51 :::::::::::::::::::::::: ::::::::::: ::::::::::: d1s95a_ 61 KITVCGDTHGQFYDLLNIFELNGLpseTNPYIFNGDFVdrgsfSVEVILTLFGFkllypd 120 d1s3la_ 52 NIIATYGNNDG------------------------ERCKLKEwlkdineeniIDDFISVE 87 ::::::::::: ::::::: :::::::: d1s95a_ 121 HFHLLRGNHETdnmnqiygfegevkakytaqmyelFSEVFEW----------LPLAQCIN 170 d1s3la_ 88 iddLKFFITHG--------------------------------HHQS------------- 102 :::::::: :::: d1s95a_ 171 ---GKVLIMHGglfsedgvtlddirkiernrqppdsgpmcdllWSDPqpqngrsiskrgv 227 d1s3la_ 103 --VLEM-aIKSGL----YDVVIYGHTHE---RVFEEVddVLVINPGeCCGYL----TGIP 148 :::: ::::: ::::::::::: :::::: ::::::: ::::: :::: d1s95a_ 228 scQFGPdvTKAFLeennLDYIIRSHEVKaegYEVAHG--GRCVTVF-SAPNYcdqmGNKA 284 d1s3la_ 149 TIGILDTEKKEYREIVL----------------------- 165 ::::::::::::::::: d1s95a_ 285 SYIHLQGSDLRPQFHQFtavphpnvkpmayantllqlgmm 324 FAST alignment (Normalized score: 6.04 Raw score:1397.00) d1s3la_ 1 -----------------------------------------------------------M 1 : d1s95a_ 1 YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETE 60 d1s3la_ 2 KIGIMSDTHDHLPNIRKAIEIFNDENV-------ETVIHCGDFV-------SLFVIKEFE 47 ::::::::::::::::::::: :::::::: ::::::::: d1s95a_ 61 KITVCGDTHGQFYDLLNIFEL------NGLPSETNPYIFNGD--FVDRGSFSVEVILTLF 112 d1s3la_ 48 NLNA--------NIIATYGNNDGE-----------------------RCKLKEWLKDINE 76 ::::::::: ::::::: d1s95a_ 113 ----GFKLLYPDHFHLLRGNH---ETDNMNQIYGFEGEVKAKYTAQMYELFSEV------ 159 d1s3la_ 77 ENI---IDDFISVEIDDLKFFITHGH---------------------------------- 99 ::::: ::: :::::: d1s95a_ 160 ---FEWLPLAQ--CIN-GKVLIM---HGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLL 210 d1s3la_ 100 ---------------------HQSVLEMAIKS-GLYDVVIYGHTHERVFE---------- 127 :::::::::: ::::::::: d1s95a_ 211 WSDPQPQNGRSISKRGVSCQFGPDVTKAFLE-ENNLDYIIRS--------HEVKAEGYEV 261 d1s3la_ 128 EVDDVLVINPGECCGYLT-------GIPTIGILDTEKKEYREIVL--------------- 165 :::: :::: ::::: :::::::::::::::::: d1s95a_ 262 AHGG-RCVT-VFSAP---NYCDQMGNKASYIHLQGSDLRPQFH--QFTAVPHPNVKPMAY 314 d1s3la_ 166 ---------- 166 d1s95a_ 315 ANTLLQLGMM 324 TMalign alignment (TM-score: 0.69 Raw score:113.49) d1s3la_ 1 -----------------------------------------------------------M 1 : d1s95a_ 1 YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETE 60 d1s3la_ 2 KIGIMSDTHDHLPNIRKAIE-IFNDE-NVETVIHCGDFV-----SLFVIKEF-ENL--N- 50 :::::::::::::::::::: ::::: ::: :::::::: :::::::: ::: : d1s95a_ 61 KITVCGDTHGQFYDLLNIFELNGLPSETNP-YIFNGDFVDRGSFSVEVILTLFGFKLLYP 119 d1s3la_ 51 -ANIIATYGNND---G-----------------ERCKLKEWLKDINEENIIDDFISVEID 89 ::::::::::: : :::::::::: ::: : :::: d1s95a_ 120 DHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEW------LPL--A-QCIN 170 d1s3la_ 90 DLKFFITHG-------------------------------HH-Q---------------S 102 ::::::::: :: : : d1s95a_ 171 GKVLIMHGGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQ 230 d1s3la_ 103 VLE-MAIKS-G-L-YDVVIYG-HTHE--RVFEEVDDVLVINPGECCGY---LTGIPTIGI 152 ::: ::::: : : ::::::: :::: :::::: :::::::::::: ::::::::: d1s95a_ 231 FGPDVTKAFLEENNLDYIIRSHEVKAEGYEVAHG--GRCVTVFSAPNYCDQMGNKASYIH 288 d1s3la_ 153 LDTEKKEYREIVL----------------------- 165 ::::::::::::: d1s95a_ 289 LQGSDLRPQFHQFTAVPHPNVKPMAYANTLLQLGMM 324 HHsearch alignment (Probability: 0.99 E-value:0.00) d1s3la_ 2 KIGIMSDTHDHLPNIRKAIEIFNDENVE-TVIHCGDFVSLFVI-----KEFENL----NA 51 :::::::::::::::::::::::::::: :::::::::::::: :::::: :: d1s95a_ 61 KITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPD 120 d1s3la_ 52 NIIATYGNNDGERCKL----KEWLK-DINEE---------NIIDDFISVEIDDLKFFITH 97 :::::::::::::::: ::::: ::::: :::::: ::::::::::: d1s95a_ 121 HFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLPLA---QCINGKVLIMH 177 d1s3la_ 98 GHHQS----------------------------------------------------VLE 105 ::::: ::: d1s95a_ 178 GGLFSEDGVTLDDIRKIERNRQPPDSGPMCDLLWSDPQPQNGRSISKRGVSCQFGPDVTK 237 d1s3la_ 106 MAIKSGLYDVVIYGHTHERV-F-EEVDDVLVINPGECC---GYLTGIPTIGILDTEKKEY 160 :::::::::::::::::::: : ::::::: ::::::: ::::::::::::::::::: d1s95a_ 238 AFLEENNLDYIIRSHEVKAEGYEVAHGGRC-VTVFSAPNYCDQMGNKASYIHLQGSDLRP 296 d1s3la_ 161 REI 163 ::: d1s95a_ 297 QFH 299