Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1s3la_ | Putative phosphodiesterase MJ0936 | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
| Hit | d1auia_ | Protein phosphatase-2B (PP-2B, calcineurin A subunit) | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
Query <-- 1.956 --> IntermediateDALI alignment (Z-score: 6.1 Raw score:664.70) query 1 slqLRLALNqidstvgdiagNAEAILRWTRHSAEQGAHLVAFPEMALTgypvedlalrss 60 :::::: :::::::::::::::::::::::::::: d1s3la_ 1 ---MKIGIM------sdthdHLPNIRKAIEIFNDENVETVIHCGDFVS------------ 39 query 61 fveasrtalRELAARLaeEGFGeLPVLV---gYLDRsesaqpkygqpagaprnaaavlhR 117 ::::::: :::: ::::: :::: : d1s3la_ 40 ---------LFVIKEF--ENLN-ANIIAtygnNDGE-------------rcklkewlkdI 74 query 118 GRVALTFAkhhlpnygvfdefryfvpgdtmPIVRLHGVDIALAICEDLwqdgGRVPAAR- 176 :::::::: :::::::::::::::::: ::::::: d1s3la_ 75 NEENIIDD---------------------fISVEIDDLKFFITHGHHQ----SVLEMAIk 109 query 177 SAGAGLLLSVNASpyerdkddtrlelvrkRAQEaGCTTAYLAM-IGGQdelvfdgdsivv 235 ::::::::::::: :::: ::::::::: :::: d1s3la_ 110 SGLYDVVIYGHTH------------ervfEEVD-DVLVINPGEcCGYL------------ 144 query 236 drdgevvarapQFSEGCVVLDLDLpaaeaepptgvvddglridrlviseeplpayeaela 295 ::::::::::::: d1s3la_ 145 -----------TGIPTIGILDTEK-----------------------------------k 158 query 296 ggyadrl 302 d1s3la_ 159 eyreivl 165 FAST alignment (Normalized score: 4.01 Raw score:894.50) query 1 SLQL-RLALNQIDSTVGDIAG-----NAEAILRWTRHSAEQGAHLVAFPEMALTGYPVED 54 ::::: ::::::::::::::::::::: d1s3la_ 1 ----MKIGIM-----------SDTHDHLPNIRKAIEIFNDENVETVI------------- 32 query 55 LALRSSFVEASRT------------------------------ALRELAARLAEEGFGEL 84 ::::::::::: d1s3la_ 33 -------------HCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKD------ 73 query 85 PVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPG 144 d1s3la_ 74 ------------------------------------------------------------ 74 query 145 D--------TMPIVRLHGVDIALAICEDLWQDGGRVPAARSA-GAGLLLSVNASPYERDK 195 :::::::::::::::: :::: ::::::::: ::::::::: d1s3la_ 74 -INEENIIDDFISVEIDDLKFFITH---GHHQ-SVLEMAIKSGLYDVVIYGH-------- 120 query 196 DDTRLELVRKRAQE---------AGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAP 246 :::::::: d1s3la_ 121 --------------THERVFEEVDDVLVINP----------------------------- 137 query 247 -------QFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYA 299 :::::::::: d1s3la_ 138 GECCGYLTGIPTIGILD------------------------------------------- 154 query 300 DRL----------- 302 d1s3la_ 155 ---TEKKEYREIVL 165 TMalign alignment (TM-score: 0.40 Raw score:119.85) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 ::::::::::: :: :::::::::::::::::::::::::: d1s3la_ 1 ---MKIGIMSDTHD-----HL-PNIRKAIEIFNDENVETVIHCGDFVS------------ 39 query 61 FVEASRTALRELAARLAEEGFGELPVLVGY--LDRSE-SAQPKYGQPAGAPRNAAA-VLH 116 : :: ::: :: ::: :::::::: ::::: ::: :: d1s3la_ 40 ----L--FV-IKE-FE--NLN-ANIIATYGNNDGERCK---------------LKEW-LK 72 query 117 -RGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAA 175 ::::::::: :::::::::::::::::: :: :::::: d1s3la_ 73 DINEENIIDD---------------------FISVEIDDLKFFITHGHH-QS--VLEMAI 108 query 176 RSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAM-IGGQDELVFDGDSIV 234 :::::::::::::: :: ::: ::: ::::::::: ::: :: d1s3la_ 109 KSGLYDVVIYGHTH---------ER-VFE--EVD-DVLVINPGECCGY-----LT----- 145 query 235 VDRDGEVVARAPQFSEGCVVLDL-DLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAE 293 :::::::::: :: d1s3la_ 146 -------------GIPTIGILDTEKK---------------------------------- 158 query 294 LAGGYA-DRL 302 :::::: d1s3la_ 159 EYREIVL--- 165 HHsearch alignment (Probability: 0.38 E-value:0.00) query 4 LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAF 42 ::::::: :::::::::::::::::::::::::: d1s3la_ 1 MKIGIMS------DTHDHLPNIRKAIEIFNDENVETVIH 33
Intermediate <-- 2.330 --> HitDALI alignment (Z-score: 9.5 Raw score:975.20) d1s3la_ 1 ------------------------------------------------------------ 1 d1auia_ 1 tdrvvkavpfppshrltakevfdndgkprvdilkahlmkegrleesvalriitegasilr 60 d1s3la_ 1 ---------MKIGIMSDTHDHLPNIRKAIEIFNDenvETVIHCGDFV-----SLFVIKEF 46 ::::::::::::::::::::::::: :::::::::: :::::::: d1auia_ 61 qeknlldidAPVTVCGDIHGQFFDLMKLFEVGGSpanTRYLFLGDYVdrgyfSIECVLYL 120 d1s3la_ 47 ENL----naNIIATYGNNDG------------------------ERCKLKEwlkdineen 78 ::: ::::::::::: ::::::: d1auia_ 121 WALkilypkTLFLLRGNHECrhlteyftfkqeckikyservydaCMDAFDC--------- 171 d1s3la_ 79 iIDDFISVEiddLKFFITHG-------------------------------HHQS----- 102 :::::::: :::::::: :::: d1auia_ 172 -LPLAALMN---QQFLCVHGglspeintlddirkldrfkeppaygpmcdilWSDPledfg 227 d1s3la_ 103 ------------------VLEM-aIKSGL----YDVVIYGHTHE---RVFEEVD----DV 132 :::: ::::: ::::::::::: ::::::: :: d1auia_ 228 nektqehfthntvrgcsyFYSYpaVCEFLqhnnLLSILRAHEAQdagYRMYRKSqttgFP 287 d1s3la_ 133 LVINPGeCCGYL----TGIPTIGILDteKKEYREIVL----------------------- 165 :::::: ::::: :::::::::: ::::::::: d1auia_ 288 SLITIF-SAPNYldvyNNKAAVLKYE--NNVMNIRQFncsphpywlpnfmdvftwslpfv 344 d1s3la_ 166 ---------------------------------- 166 d1auia_ 345 gekvtemlvnvlnicssfeeakgldrinermppr 378 FAST alignment (Normalized score: 5.51 Raw score:1377.00) d1s3la_ 1 M----------------------------------------------------------- 1 d1auia_ 1 -TDRVVKAVPFPPSHRLTAKEVFDNDGKPRVDILKAHLMKEGRLEESVALRIITEGASIL 59 d1s3la_ 2 -----------KIGIMSDTHDHLPNIRKAIEIFNDENV------ETVIHCGDFV------ 38 ::::::::::::::::::::: :::::::: d1auia_ 60 RQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEV------GGSPANTRYLFLGD--YVDRGY 111 d1s3la_ 39 -SLFVIKEFENLNA-------NIIATYGNNDG----------------------ERCKLK 68 :::::::::: ::::::::: :::::: d1auia_ 112 FSIECVLYLWA---LKILYPKTLFLLRGNH--ECRHLTEYFTFKQECKIKYSERVYDACM 166 d1s3la_ 69 EWLKDINEENI---IDDFISVEIDDLKFFITHG--------------------------- 98 :: ::::: ::: :::::: d1auia_ 167 DA---------FDCLPLAA--LMN-QQFLCV--HGGLSPEINTLDDIRKLDRFKEPPAYG 212 d1s3la_ 99 ----------------------------------HHQSVLEMAIKS-GLYDVVIYGHTHE 123 ::::::::::: ::::::::: d1auia_ 213 PMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCEFLQ-HNNLLSILRA---- 267 d1s3la_ 124 RVF-----------EEVDDV-----LVINPGECCGYLT-------GIPTIGILDTE--KK 158 :::: :::: ::::: ::::::: :: d1auia_ 268 ---HEAQDAGYRMYRKSQ--TTGFPSLIT-IFSAP---NYLDVYNNKAAVLK----YENN 314 d1s3la_ 159 EYREIVL----------------------------------------------------- 165 ::::: d1auia_ 315 VMNIR--QFNCSPHPYWLPNFMDVFTWSLPFVGEKVTEMLVNVLNICSSFEEAKGLDRIN 372 d1s3la_ 166 ------ 166 d1auia_ 373 ERMPPR 378 TMalign alignment (TM-score: 0.71 Raw score:116.83) d1s3la_ 1 ------------------------------------------------------------ 1 d1auia_ 1 TDRVVKAVPFPPSHRLTAKEVFDNDGKPRVDILKAHLMKEGRLEESVALRIITEGASILR 60 d1s3la_ 1 ---------MKIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFV-----SLFVIKEF 46 :::::::::::::::::::::::::::::::::::::: :::::::: d1auia_ 61 QEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYL 120 d1s3la_ 47 -ENL--N-ANIIATYGNNDG------------------------ERCKLKEWLKDINEEN 78 ::: : :::::::::::: ::::::: d1auia_ 121 WALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDC--------- 171 d1s3la_ 79 IIDDFISVEIDDLKFFITHG-------------------------------HH-Q----- 101 ::: ::::: :::::::: :: : d1auia_ 172 -LPL-AALMN--QQFLCVHGGLSPEINTLDDIRKLDRFKEPPAYGPMCDILWSDPLEDFG 227 d1s3la_ 102 -------S---------V-LE--MAIKS-G-L-YDVVIYGHTHE---RVFEEVD--D-VL 133 : : :: ::::: : : ::::::::::: ::::::: : :: d1auia_ 228 NEKTQEHFTHNTVRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFP 287 d1s3la_ 134 -VINPGECCGYL--TGIPTIGILDTEKKEYREIVL------------------------- 165 ::::::::::: ::::::::::::::::::::: d1auia_ 288 SLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPFVGEK 347 d1s3la_ 166 ------------------------------- 166 d1auia_ 348 VTEMLVNVLNICSSFEEAKGLDRINERMPPR 378 HHsearch alignment (Probability: 0.98 E-value:0.00) d1s3la_ 2 KIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLFV-----IKEFEN----LNAN 52 ::::::::::::::::::::::::::::::::::::::::: :::::: :::: d1auia_ 71 PVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKT 130 d1s3la_ 53 IIATYGNNDGER 64 :::::::::::: d1auia_ 131 LFLLRGNHECRH 142