Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T0542_Ad1.pdb
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1s3la_ | Putative phosphodiesterase MJ0936 | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
| Hit | d1utea_ | Mammalian purple acid phosphatase | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
Query <-- 1.956 --> IntermediateDALI alignment (Z-score: 6.1 Raw score:664.70) query 1 slqLRLALNqidstvgdiagNAEAILRWTRHSAEQGAHLVAFPEMALTgypvedlalrss 60 :::::: :::::::::::::::::::::::::::: d1s3la_ 1 ---MKIGIM------sdthdHLPNIRKAIEIFNDENVETVIHCGDFVS------------ 39 query 61 fveasrtalRELAARLaeEGFGeLPVLV---gYLDRsesaqpkygqpagaprnaaavlhR 117 ::::::: :::: ::::: :::: : d1s3la_ 40 ---------LFVIKEF--ENLN-ANIIAtygnNDGE-------------rcklkewlkdI 74 query 118 GRVALTFAkhhlpnygvfdefryfvpgdtmPIVRLHGVDIALAICEDLwqdgGRVPAAR- 176 :::::::: :::::::::::::::::: ::::::: d1s3la_ 75 NEENIIDD---------------------fISVEIDDLKFFITHGHHQ----SVLEMAIk 109 query 177 SAGAGLLLSVNASpyerdkddtrlelvrkRAQEaGCTTAYLAM-IGGQdelvfdgdsivv 235 ::::::::::::: :::: ::::::::: :::: d1s3la_ 110 SGLYDVVIYGHTH------------ervfEEVD-DVLVINPGEcCGYL------------ 144 query 236 drdgevvarapQFSEGCVVLDLDLpaaeaepptgvvddglridrlviseeplpayeaela 295 ::::::::::::: d1s3la_ 145 -----------TGIPTIGILDTEK-----------------------------------k 158 query 296 ggyadrl 302 d1s3la_ 159 eyreivl 165 FAST alignment (Normalized score: 4.01 Raw score:894.50) query 1 SLQL-RLALNQIDSTVGDIAG-----NAEAILRWTRHSAEQGAHLVAFPEMALTGYPVED 54 ::::: ::::::::::::::::::::: d1s3la_ 1 ----MKIGIM-----------SDTHDHLPNIRKAIEIFNDENVETVI------------- 32 query 55 LALRSSFVEASRT------------------------------ALRELAARLAEEGFGEL 84 ::::::::::: d1s3la_ 33 -------------HCGDFVSLFVIKEFENLNANIIATYGNNDGERCKLKEWLKD------ 73 query 85 PVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPG 144 d1s3la_ 74 ------------------------------------------------------------ 74 query 145 D--------TMPIVRLHGVDIALAICEDLWQDGGRVPAARSA-GAGLLLSVNASPYERDK 195 :::::::::::::::: :::: ::::::::: ::::::::: d1s3la_ 74 -INEENIIDDFISVEIDDLKFFITH---GHHQ-SVLEMAIKSGLYDVVIYGH-------- 120 query 196 DDTRLELVRKRAQE---------AGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAP 246 :::::::: d1s3la_ 121 --------------THERVFEEVDDVLVINP----------------------------- 137 query 247 -------QFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYA 299 :::::::::: d1s3la_ 138 GECCGYLTGIPTIGILD------------------------------------------- 154 query 300 DRL----------- 302 d1s3la_ 155 ---TEKKEYREIVL 165 TMalign alignment (TM-score: 0.40 Raw score:119.85) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 ::::::::::: :: :::::::::::::::::::::::::: d1s3la_ 1 ---MKIGIMSDTHD-----HL-PNIRKAIEIFNDENVETVIHCGDFVS------------ 39 query 61 FVEASRTALRELAARLAEEGFGELPVLVGY--LDRSE-SAQPKYGQPAGAPRNAAA-VLH 116 : :: ::: :: ::: :::::::: ::::: ::: :: d1s3la_ 40 ----L--FV-IKE-FE--NLN-ANIIATYGNNDGERCK---------------LKEW-LK 72 query 117 -RGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAA 175 ::::::::: :::::::::::::::::: :: :::::: d1s3la_ 73 DINEENIIDD---------------------FISVEIDDLKFFITHGHH-QS--VLEMAI 108 query 176 RSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAM-IGGQDELVFDGDSIV 234 :::::::::::::: :: ::: ::: ::::::::: ::: :: d1s3la_ 109 KSGLYDVVIYGHTH---------ER-VFE--EVD-DVLVINPGECCGY-----LT----- 145 query 235 VDRDGEVVARAPQFSEGCVVLDL-DLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAE 293 :::::::::: :: d1s3la_ 146 -------------GIPTIGILDTEKK---------------------------------- 158 query 294 LAGGYA-DRL 302 :::::: d1s3la_ 159 EYREIVL--- 165 HHsearch alignment (Probability: 0.38 E-value:0.00) query 4 LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAF 42 ::::::: :::::::::::::::::::::::::: d1s3la_ 1 MKIGIMS------DTHDHLPNIRKAIEIFNDENVETVIH 33
Intermediate <-- 2.523 --> HitDALI alignment (Z-score: 13.0 Raw score:1179.00) d1s3la_ 1 ----MKIGIMSDTHD----------HLPNIRKAIEIFNDENVETVIHCGDFVS------- 39 ::::::::::: :::::::::::::::::::::::::::: d1utea_ 1 ptpiLRFVAVGDWGGvpnapfhtarEMANAKAIATTVKTLGADFILSLGDNFYftgvhda 60 d1s3la_ 40 -----lFVIK-EFEN---LNANIIATYGNND--GERCKLKEWlKDINEENII-DDFISVE 87 :::: :::: ::::::::::::: ::::::::: ::::::::: ::::::: d1utea_ 61 kdkrfqETFEdVFSDpslRNVPWHVLAGNHDhlGNVSAQIAY-SKISKRWNFpSPYYRLR 119 d1s3la_ 88 ID------DLKF------------------------------------------------ 93 :: :::: d1utea_ 120 FKiprsnvSVAIfmldtvtlcgnsddfvsqqperprnlalartqlawikkqlaaakedyv 179 d1s3la_ 94 -FITHGH---------HQSV---LEMAIKSGLYDVVIYGHTHERVFEEV-DDVLVINPGE 139 :::::: :::: :::::::::::::::::::::::::: :::::::::: d1utea_ 180 lVAGHYPvwsiaehgpTHCLvkqLLPLLTTHKVTAYLCGHDHNLQYLQDeNGLGFVLSGA 239 d1s3la_ 140 CCGYLT---------------------GIPTIGILDTE--KKEYREIVL----------- 165 :::::: ::::::::::: ::::::::: d1utea_ 240 GNFMDPskkhlrkvpngylrfhfgaenSLGGFAYVEITpkEMSVTYIEAsgkslfktklp 299 d1s3la_ 166 --- 166 d1utea_ 300 rra 302 FAST alignment (Normalized score: 8.57 Raw score:1914.00) d1s3la_ 1 ----MKIGIMSDTHD------------HLPNIRKAIEIFNDENVETVIHCGDFV------ 38 ::::::::: ::::::::::::::::::::::::: d1utea_ 1 PTPILRFVAVGDW--GGVPNAPFHTAREMANAKAIATTVKTLGADFILSLGD--NFYFTG 56 d1s3la_ 39 --------SLFV-IKEFEN-----LNANIIATYGNND---GERCKLKEWLKDINEENI-I 80 :::: :::: :::::::::::: :::::::::::: ::::: : d1utea_ 57 VHDAKDKRFQETFEDVF--SDPSLRNVPWHVLAGNH-DHLGNVSAQIAYSKI-SKRWNFP 112 d1s3la_ 81 DDFISVEI---------------------------------------------------- 88 ::::::: d1utea_ 113 SPYYRLR-FKIPRSNVSVAIFMLDTVTLCGNSDDFVSQQPERPRNLALARTQLAWIKKQL 171 d1s3la_ 89 ----DDLKFFITHGHH-----------------QSVLEMAIKSGLYDVVIYGHT--HERV 125 :::::::: :::::::::: :::::::: :::: d1utea_ 172 AAAKEDYVLVAG----HYPVWSIAEHGPTHCLVKQLLPLLTTH-KVTAYLCG--HDHNLQ 224 d1s3la_ 126 FEEV-DDVLVINPGECCGYLTGI----------------------------PTIGILDTE 156 :::: ::::::::::: ::::::: d1utea_ 225 YLQDENGLGFVLSGAG-------NFMDPSKKHLRKVPNGYLRFHFGAENSLGGFAYVE-- 275 d1s3la_ 157 ----KKEYREIVL---------------- 165 ::::::: d1utea_ 276 ITPKEMSVTYI--EASGKSLFKTKLPRRA 302 TMalign alignment (TM-score: 0.81 Raw score:132.95) d1s3la_ 1 ----MKIGIMSDTHD-------H--LPNIRKAIEIFND-ENVETVIHCGDFV---S---- 39 ::::::::::: : ::::::::::::: ::::::::::::: : d1utea_ 1 PTPILRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDA 60 d1s3la_ 40 ---LF--VIKE-FEN--L-NANIIATYGNND--GERCKLKEWLKDINEENIIDDFISVEI 88 :: :::: ::: : :::::::::::: ::::::::::::::::::::::::::: d1utea_ 61 KDKRFQETFEDVFSDPSLRNVPWHVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRF 120 d1s3la_ 89 -D-----D-------------------------------------------------LKF 93 : : ::: d1utea_ 121 KIPRSNVSVAIFMLDTVTLCGNSDDFVSQQPERPRNLALARTQLAWIKKQLAAAKEDYVL 180 d1s3la_ 94 FITHGH---------HQSV---LEMAIKSGLYDVVIYGHTHERVFEEV-DDVLVINPGEC 140 :::::: :::: :::::::::::::::::::::::::: ::::::::::: d1utea_ 181 VAGHYPVWSIAEHGPTHCLVKQLLPLLTTHKVTAYLCGHDHNLQYLQDENGLGFVLSGAG 240 d1s3la_ 141 CGYLT-------------------G-I-PTIGILDTE--KKEYREIVL------------ 165 ::::: : : ::::::::: ::::::::: d1utea_ 241 NFMDPSKKHLRKVPNGYLRFHFGAENSLGGFAYVEITPKEMSVTYIEASGKSLFKTKLPR 300 d1s3la_ 166 -- 166 d1utea_ 301 RA 302 HHsearch alignment (Probability: 1.00 E-value:0.00) d1s3la_ 1 MKIGIMSDTHDHLP----------NIRKAIEIFNDENVETVIHCGDFVSL---------F 41 :::::::::::::: :::::::::::::::::::::::::: : d1utea_ 5 LRFVAVGDWGGVPNAPFHTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAKDKR 64 d1s3la_ 42 VI-------KEFENLNANIIATYGNNDGERCKLKEW--LKDI------------------ 74 :: ::::::::::::::::::::::::::: :::: d1utea_ 65 FQETFEDVFSDPSLRNVPWHVLAGNHDHLGNVSAQIAYSKISKRWNFPSPYYRLRFKIPR 124 d1s3la_ 75 -------------------------------------NEENIIDDFISVEIDDLKFFITH 97 ::::::::::::::::::::::: d1utea_ 125 SNVSVAIFMLDTVTLCGNSDDFVSQQPERPRNLALARTQLAWIKKQLAAAKEDYVLVAGH 184 d1s3la_ 98 GHHQ------------SVLEMAIKSGLYDVVIYGHTHERVFEE-VDDVLVINPGECCGYL 144 :::: ::::::::::::::::::::::::::: :::::::::::::::: d1utea_ 185 YPVWSIAEHGPTHCLVKQLLPLLTTHKVTAYLCGHDHNLQYLQDENGLGFVLSGAGNFMD 244 d1s3la_ 145 ---------------------TGIPTIGILDTEKKEYRE 162 :::::::::::::::::: d1utea_ 245 PSKKHLRKVPNGYLRFHFGAENSLGGFAYVEITPKEMSV 283