Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ni5a1 | Putative cell cycle protein MesJ, N-terminal domain | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1xyza_ | Xylanase | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
Query <-- 0.958 --> IntermediateDALI alignment (Z-score: 13.9 Raw score:1146.20) query 1 slqlrlalnqidstvgdiagnaeailrwtrhsaeqgahlvafpemaltgypvedlalrss 60 d1ni5a1 1 ------------------------------------------------------------ 1 query 61 fveasrtalrelaarlaeegfgelpvlvgyldrsesaqpkygqpagaprnaaavlhrgrv 120 d1ni5a1 1 ------------------------------------------------------------ 1 query 121 altfakhhlpnygvfdefryfvpgdtmpivrlhgvdialaicedlwqdggrvpaarsaga 180 d1ni5a1 1 ------------------------------------------------------------ 1 query 181 glllsvnaspyerdkddtrlelvrkraqeagcttaylamiggqdelvfdgdsivvdrdge 240 d1ni5a1 1 ------------------------------------------------------------ 1 query 241 vvarapqfsegcvvldldlpaaeaepptgvvddglridrlviseeplpayeaelaggyad 300 d1ni5a1 1 ------------------------------------------------------------ 1 query 301 rldadeevysALVVGLRAYVAknGFRSVLIGLSGGIDSALVAAIACDALG---aQNVYGV 357 ::::::::::: ::::::::::::::::::::::::::: :::::: d1ni5a1 1 ----------SMTLTLNRQLL--TSRQILVAFSGGLDSTVLLHQLVQWRTenpgVALRAI 48 query 358 SMPSKYS--SDHSKGDAAELARRTGLNFRTVSIEpmFDAYMaslgltglAEEN-LQSRLR 414 ::::::: ::::::::::::::::::::::::: ::::: :::: :::::: d1ni5a1 49 HVHHGLSanADAWVTHCENVCQQWQVPLVVERVQ--LAQEG--------LGIEaQARQAR 98 query 415 GTTLMAISNqEGHIVLAPGNKSELAVG-----------------ystlygdsvgAYGPIK 457 ::::::::: ::::::::::::::::: :::::: d1ni5a1 99 YQAFARTLL-PGEVLVTAQHLDDQCETfllalkrgsgpaglsamaevsefagtrLIRPLL 157 query 458 DVYKTSIFRLAEWRNraaaergqtppIPEAS------------------------itkPD 493 ::::::::::::::: ::::: :: d1ni5a1 158 ARTRGELVQWARQYD-----------LRWIEdesnqddsydrnflrlrvvpllqqrwpHF 206 query 494 YPVLDAIlELYVdRDTGadaivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfg 553 ::::::: :::: :::: d1ni5a1 207 AEATARSaALCA-EQES------------------------------------------- 222 query 554 kdrrlpitnrwregh 568 d1ni5a1 223 ----------lldel 227 FAST alignment (Normalized score: 6.05 Raw score:2174.00) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 d1ni5a1 1 ------------------------------------------------------------ 1 query 61 FVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRV 120 d1ni5a1 1 ------------------------------------------------------------ 1 query 121 ALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGA 180 d1ni5a1 1 ------------------------------------------------------------ 1 query 181 GLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGE 240 d1ni5a1 1 ------------------------------------------------------------ 1 query 241 VVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYAD 300 d1ni5a1 1 ------------------------------------------------------------ 1 query 301 RLDADEEVYSA-LVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQ------- 352 ::::::::: :::::::::::::::::::::::::: d1ni5a1 1 -----------SMTLTLNRQL--LTSRQILVAFSGGLDSTVLLHQLVQW----RTENPGV 43 query 353 NVYGVSMPSKYS--SDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAE---- 406 :::::::::::: :::::::::::::::::::::::: d1ni5a1 44 ALRAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERV------------------QLAQ 85 query 407 -----ENLQSRLRGTTLMAISNQ--EGHIVLAPGNKSELAVGYSTLYGDSVG-------- 451 ::::::::::::::: ::::::::::::::: d1ni5a1 86 EGLGIEAQARQARYQAFART---LLPGEVLVTAQHLDDQC------------ETFLLALK 130 query 452 ---------------------AYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASIT 490 ::::::::::::::::::: d1ni5a1 131 RGSGPAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQ-------------------- 170 query 491 KP-----------------------------------DYPVLDAILELYVDRDTGADAIV 515 :::::::::::::: d1ni5a1 171 --YDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAE--------- 219 query 516 AAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH------- 568 d1ni5a1 220 -----------------------------------------------------QESLLDE 226 query 569 - 569 d1ni5a1 227 L 227 TMalign alignment (TM-score: 0.28 Raw score:157.99) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 d1ni5a1 1 ------------------------------------------------------------ 1 query 61 FVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRV 120 d1ni5a1 1 ------------------------------------------------------------ 1 query 121 ALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGA 180 d1ni5a1 1 ------------------------------------------------------------ 1 query 181 GLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGE 240 d1ni5a1 1 ------------------------------------------------------------ 1 query 241 VVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYAD 300 d1ni5a1 1 ------------------------------------------------------------ 1 query 301 RLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALG--A-QNVYGV 357 ::::::::::: : :::::::::::::::::::::::::: : :::::: d1ni5a1 1 ----------SMTLTLNRQLL-T-SRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAI 48 query 358 SMPSKYS--SDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEE-NLQSRLR 414 ::::::: ::::::::::::::::::::::::: : : ::: ::: ::::::: d1ni5a1 49 HVHHGLSANADAWVTHCENVCQQWQVPLVVERVQ--L---A----QEG-LGIEAQARQAR 98 query 415 GTTLMAISNQEGHIVLAPGNKSELAVG-YS-----------------TLYGDS-V---GA 452 :::::::: :::::::::::::::::: :: : : :: d1ni5a1 99 YQAFARTL-LPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEV-----SEFAGTRL 152 query 453 YGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITK-------------PD-YPVLD 498 :::::::::::::::::::: : :::::: :: ::::: d1ni5a1 153 IRPLLARTRGELVQWARQYD-----------L-RWIEDESNQDDSYDRNFLRLRVVPLLQ 200 query 499 AILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRL 558 :::::::: : : ::::::::: d1ni5a1 201 QRWPHFAE-A----------------------T------------------ARSAALCAE 219 query 559 P-------ITNRWREGH 568 : d1ni5a1 220 QESLLDEL--------- 227 HHsearch alignment (Probability: 0.96 E-value:0.00) query 326 RSVLIGLSGGIDSALVAAIACDALGAQ---NVYGVSMPSKYSS--DHSKGDAAELARRTG 380 ::::::::::::::::::::::::::: ::::::::::::: ::::::::::::::: d1ni5a1 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANADAWVTHCENVCQQWQ 73 query 381 LNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAISNQEGHIVLA--------- 431 ::::::::: ::::::::::::::::::::::::::::::::: d1ni5a1 74 VPLVVERVQ---------LAQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLDDQCET 124 query 432 ------PGNKSELAVGYSTLYGDSVGAYG-PIKDVYKTSIFRLAEWRN 472 ::::::::::::::::::::::: :::::::::::::::::: d1ni5a1 125 FLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYD 172
Intermediate <-- 0.902 --> HitDALI alignment (Z-score: 1.7 Raw score:289.00) d1ni5a1 1 ------------------------------------------------------------ 1 d1xyza_ 1 nalrdyaeargikigtcvnypfynnsdptynsilqrefsmvvcenemkfdalqprqnvfd 60 d1ni5a1 1 ------------------------------------------------------------ 1 d1xyza_ 61 fskgdqllafaerngmqmrghtliwhnqnpswltngnwnrdsllavmknhittvmthykg 120 d1ni5a1 1 ---------------------------smtLTLNRQLLTS-------rQILV--AFSG-G 23 :::::::::: :::: :::: : d1xyza_ 121 kivewdvanecmddsgnglrssiwrnvigqDYLDYAFRYAreadpdalLFYNdyNIEDlG 180 d1ni5a1 24 LDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANaDAWVTHCENVCQQWQ----VPLV-V 78 :::::::::::::::::::::::::::::::::: ::::::::::::::: :::: : d1xyza_ 181 PKSNAVFNMIKSMKERGVPIDGVGFQCHFINGMS-PEYLASIDQNIKRYAeigvIVSFtE 239 d1ni5a1 79 ERVQLAQE---------------------------------------glgIEAQarqary 99 :::::::: :::: d1xyza_ 240 IDIRIPQSenpatafqvqannykelmkiclanpncntfvmwgftdkytwiPGTF------ 293 d1ni5a1 100 qafartllpgevlvtaqhlddqcetfllalkrgsgpaglsamaevsefagtrlirpllar 159 d1xyza_ 294 ------------------------------------------------------------ 294 d1ni5a1 160 trgelvqwarqydlrwiedesnqddsydrnflrlrvvpllqqrwphfaeatarsaalcae 219 d1xyza_ 294 -----------------------------------------pgygnpliydsnynpkpay 312 d1ni5a1 220 qeslldel 227 d1xyza_ 313 naikealm 320 FAST alignment (Normalized score: 2.31 Raw score:622.60) d1ni5a1 1 SMT--------------------------------------------------------- 3 d1xyza_ 1 ---NALRDYAEARGIKIGTCVNYPFYNNSDPTYNSILQREFSMVVCENEMKFDALQPRQN 57 d1ni5a1 4 ------------------------------------------------------------ 4 d1xyza_ 58 VFDFSKGDQLLAFAERNGMQMRGHTLIWHNQNPSWLTNGNWNRDSLLAVMKNHITTVMTH 117 d1ni5a1 4 ---------------------------------LTLNRQLLTS-------RQILVA---- 19 ::::::::: :::::: d1xyza_ 118 YKGKIVEWDVANECMDDSGNGLRSSIWRNVIGQDYLDYAFRY-AREADPDALLFYNDYNI 176 d1ni5a1 20 FSGGLDSTVLLHQLVQWRTENPGVA-LRAIHV--HHGL-SANADAWVTHCENVCQQWQVP 75 ::::::::::::::::::: :::: :::::: :::: ::::::::::::::::::::: d1xyza_ 177 EDLGPKSNAVFNMIKSMKE--RGVPIDGVGFQCHFINGMSPEYLASIDQNIKRYAEIGVI 234 d1ni5a1 76 LV-VERVQLAQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHLDDQCETFLLALKRGSG 134 :: ::::: d1xyza_ 235 VSFTEIDI---------------------------------------------------- 242 d1ni5a1 135 PAGLSAMAEVSEFAGTRLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRNFLRLR 194 d1xyza_ 243 ------------------------------------------------------------ 243 d1ni5a1 195 VVPLLQQRWPHFAEATARSAALCAEQESLLDEL--------------------------- 227 d1xyza_ 243 ---------------------------------RIPQSENPATAFQVQANNYKELMKICL 269 d1ni5a1 228 --------------------------------------------------- 228 d1xyza_ 270 ANPNCNTFVMWGFTDKYTWIPGTFPGYGNPLIYDSNYNPKPAYNAIKEALM 320 TMalign alignment (TM-score: 0.38 Raw score:85.30) d1ni5a1 1 ------------------------------------------SM--T------------- 3 :: : d1xyza_ 1 NALRDYAEARGIKIGTCVNYPFYNNSDPTYNSILQREFSMVVCENEMKFDALQPRQNVFD 60 d1ni5a1 4 ---L--TL-------NRQL----------------------------------------- 10 : :: :::: d1xyza_ 61 FSKGDQLLAFAERNGMQMRGHTLIWHNQNPSWLTNGNWNRDSLLAVMKNHITTVMTHYKG 120 d1ni5a1 11 LTSRQI-LVAFSGGL-----DST------------VLLH--QLV-QWRTENPGVALRAI- 48 :::::: ::::::: : : :: :::::::::::::: d1xyza_ 121 KIVEWDV-ANECMDDSGNGL--RSSIWRNVIGQDY---LDY-AFRYAREADPDALLFYND 173 d1ni5a1 49 --HVHHGLSANADAWVTHCEN-VCQ----QWQVPLVV--------ERVQLAQEGLGIEAQ 93 ::::: :::::::::: :: :::::: ::::: d1xyza_ 174 YNIEDLG----PKSNAVFNMIK-SMKERG--VPIDGVGFQCHFIN----------GMSPE 216 d1ni5a1 94 ARQARYQAFARTLLPGEVLVTAQHLDDQCE---TFLLALKRGSGPAGLSA-MA-EVSEFA 148 :::::::::::::::::::::::: :::: ::::::::::::::: :: ::::: d1xyza_ 217 YLASIDQNIKRYAEIGVIVSFTEI--DIRIPQS--ENPATAFQVQANNYKELMK-ICLAN 271 d1ni5a1 149 GTRLIRPLLA----RTRG-ELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRW 203 :::::::::: :::: : :: :::: d1xyza_ 272 PNCNTFVMWGFTDKYTWIP--G--------------------------TF---PGYG--- 297 d1ni5a1 204 PHFAE-ATA-R-SAALCAEQES--LLDEL 227 ::: ::: : :::::::::: : d1xyza_ 298 --NPLIYDSNYNPKPAYNAIKEAL--M-- 320 HHsearch alignment (Probability: 0.89 E-value:0.00) d1ni5a1 63 THCENVCQQWQ 73 ::::::::::: d1xyza_ 109 NHITTVMTHYK 119