Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tf7a1 | Circadian clock protein KaiC | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | α/β |
| Hit | d1t6na_ | Spliceosome RNA helicase BAT1 (UAP56) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | α/β |
Query <-- 0.638 --> IntermediateDALI alignment (Z-score: 3.2 Raw score:303.50) query 1 ----------------------------------------------------sLQLRLAL 8 ::::::: d1tf7a1 1 ehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqflyngiieFDEPGVF 60 query 9 NQID------------------------------------stvgDIAGNAEAILRWTRHS 32 :::: :::::::::::::::: d1tf7a1 61 VTFEetpqdiiknarsfgwdlaklvdegklfildaspdpegqevVGGFDLSALIERINYA 120 query 33 A-EQGAHLVAFPemALTGypvedlalrssfveasrTALRELAARLAEEgfgELPVLVGYL 91 : :::::::::: :::: ::::::::::::: ::::::::: d1tf7a1 121 IqKYRARRVSID--SVTS-----vfqqydassvvrRELFRLVARLKQI---GATTVMTTE 170 query 92 drsesaqpkygqpagaprN-------aaavlhrgRVALTFAKHHLPNYgvfdefryfvpg 144 : :::::::::::::: d1tf7a1 171 ------------------RieeygpiarygveefVSDNVVILRNVLEG------------ 200 query 145 dtmpivrlhgvdialaicedlwqdggrvpaarsagaglllsvnaspyerdkddtrlelvr 204 d1tf7a1 201 ------------------------------------------------------------ 201 query 205 kraqeagcttaylamiggqdelvfdgdsivvdrdgevvarapqfsegcvvldldlpaaea 264 d1tf7a1 201 ------------------------------------------------------------ 201 query 265 epptgvvddglridrlviseeplpayeaelaggyadrldadeevysalvvglrayvakng 324 d1tf7a1 201 ------------------------------------------------------------ 201 query 325 frsvliglsggidsalvaaiacdalgaqnvygvsmpskyssdhskgdaaelarrtglnfr 384 d1tf7a1 201 ------------------------------------------------------------ 201 query 385 tvsiepmfdaymaslgltglaeenlqsrlrgttlmaisnqeghivlapgnkselavgyst 444 d1tf7a1 201 ------------------------------------------------------------ 201 query 445 lygdsvgaygpikdvyktsifrlaewrnraaaergqtppipeasitkpdypvldailely 504 d1tf7a1 201 ------------------------------------------------------------ 201 query 505 vdrdtgadaivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfgkdrrlpitnrw 564 d1tf7a1 201 ----------------------errrrtleilklrgtshmkgeypftitdhginifplga 238 query 565 regh 568 d1tf7a1 239 mrlt 242 FAST alignment (Normalized score: 1.90 Raw score:703.80) query 1 ----------------------------------------------------SLQLRLAL 8 :::::::: d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 60 query 9 NQIDST-----------------------------------------VGDIAGNAEAILR 27 : ::::::::::::: d1tf7a1 61 V-----TFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIE 115 query 28 WTRHSA-EQGAHLVAFPEMALTGYPVEDLALRSS----------FVEASRTALRELAARL 76 :::::: :::::::::: :::::::::::::::: d1tf7a1 116 RINYAIQKYRARRVSID-----------------SVTSVFQQYDASSVVRRELFRLVARL 158 query 77 AEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRG---------------RVA 121 ::: :::::::::: ::: d1tf7a1 159 KQI---GATTVMTTER--------------------------IEEYGPIARYGVEEFVSD 189 query 122 LTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAG 181 :::::::: d1tf7a1 190 NVVILRNV---------------------------------------------------- 197 query 182 LLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEV 241 d1tf7a1 198 ------------------------------------------------------------ 198 query 242 VARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADR 301 d1tf7a1 198 ------------------------------------------------------------ 198 query 302 LDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPS 361 d1tf7a1 198 ------------------------------------------------------------ 198 query 362 KYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAI 421 d1tf7a1 198 ------------------------------------------------------------ 198 query 422 SNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQT 481 d1tf7a1 198 ------------------------------------------------------------ 198 query 482 PPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQY 541 d1tf7a1 198 ------------------------------------------------------------ 198 query 542 PPGTKISAKGFGKDRRLPITNRWREGH--------------------------------- 568 d1tf7a1 198 ---------------------------LEGERRRRTLEILKLRGTSHMKGEYPFTITDHG 230 query 569 ------------ 569 d1tf7a1 231 INIFPLGAMRLT 242 TMalign alignment (TM-score: 0.21 Raw score:121.48) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 :: : : d1tf7a1 1 --------------EH--------------------------------Q-A--------- 4 query 61 FVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRV 120 d1tf7a1 5 ------------------------------------------------------------ 5 query 121 ALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGA 180 d1tf7a1 5 ------------------------------------------------------------ 5 query 181 GLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGE 240 ::::: d1tf7a1 5 ------------------------------------------IAKMR------------- 9 query 241 VVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYAD 300 :: d1tf7a1 10 -------TM--------------------------------------------------- 11 query 301 RLDADEEVYSALVVGLRAYVAKN--------GFRSVLIGLSGG-IDSALVAAIACDALGA 351 :::::::::::: ::: : : :::::::::::::::: d1tf7a1 12 ----IEGFDDISHGGL-PIG--RSTLVSGTS-----------GTGKTLFSIQFLYNGIIE 53 query 352 -QNVYGVSMPSKYSSDHSKGDAAELAR--RTGL--NF-----RTVSIE-PMF--DAYMAS 398 ::::::::: : ::::::::::: :::: :: :::::: : d1tf7a1 54 FDEPGVFVTF---E--ETPQDIIKNARSFGWDLAKLVDEGKLFILDASP--DPE------ 100 query 399 LGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSE-L-----AV--GYSTL-YGDS 449 ::: ::::::::::::::::::::::::::::::::: : : ::::: ::: d1tf7a1 101 --GQE-VVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDA-SSVVRRELF-RLV 155 query 450 -VG----AYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELY 504 :: :::::: :: ::: ::::: d1tf7a1 156 ARLKQIGATTVMT--TE--------------------------------RIE-EYGPI-- 178 query 505 VDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTK----------------IS 548 : : :: :: ::: : :::: :: d1tf7a1 179 A---------------------R--YG--VE-EFV-S-DNVVILRNVLEGERRRRTLEIL 210 query 549 AKGFGK----------------------------DRRLPITNRWREGH 568 : : :: d1tf7a1 211 K-L-RGTSHMKGEYPFTITDHGINIFPLGAMRLT-------------- 242 HHsearch alignment (Probability: 0.02 E-value:0.74) query 324 GFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTG--L 381 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : d1tf7a1 26 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLV 85 query 382 NFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTT 417 :::::::::::::::::::::::::::::::::::: d1tf7a1 86 DEGKLFILDASPDPEGQEVVGGFDLSALIERINYAI 121
Intermediate <-- 1.679 --> HitDALI alignment (Z-score: 5.7 Raw score:626.10) d1tf7a1 1 ehqaiakmrtmiEGFD---------------------dishgglpigrSTLVSGTSGTGK 39 :::: :::::::::::: d1t6na_ 1 ---------sgfRDFLlkpellraivdcgfehpsevqhecipqailgmDVLCQAKSGMGK 51 d1tf7a1 40 TLFSIQFLYNGII--efdePGVFVTFE-ETPQDIIKNARsFGWD--lAKLV--------- 85 ::::::::::::: :::::::: ::::::::::: :::: :::: d1t6na_ 52 TAVFVLATLQQLEpvtgqvSVLVMCHTrELAFQISKEYE-RFSKympNVKVavffgglsi 110 d1tf7a1 86 ---------dEGKLFILDaspdpegqevvggfdlSALIER---inYAIQkyRARRVSIDS 133 :::::::: :::::: :::: ::::::::: d1t6na_ 111 kkdeevlkknCPHIVVGT---------------pGRILALarnksLNLK--HIKHFILDE 153 d1tf7a1 134 VTSVfqqydassvVRRELFRLVARLKQIG---ATTVMTTERieeygpiARYGVEEFVSD- 189 :::: :::::::::::::::: ::::::::: ::::::::::: d1t6na_ 154 CDKM--------lEQLDMRRDVQEIFRMTpheKQVMMFSAT-------LSKEIRPVCRKf 198 d1tf7a1 190 ----NVVILrnvlegerrrrtleilklrgtshmkgeypftitdhginifplgamrlt 242 ::::: d1t6na_ 199 mqdpMEIFV------------------------------------------------ 207 FAST alignment (Normalized score: 4.88 Raw score:1093.00) d1tf7a1 1 EHQAIAKMRTM---------------------------IEGFDDISHGGLPI----GRST 29 :::::: :::: d1t6na_ 1 -----------SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIP--------QAILGMDV 41 d1tf7a1 30 LVSGTSGTGKTLFSIQFLYNGIIEFDE---------PGVFVTFEE---TPQDIIKNARSF 77 :::::::::::::::::::: ::::::: ::::::::::: d1t6na_ 42 LCQAKSGMGKTAVFVLATLQ-------QLEPVTGQVSVLVMCH--TRELAFQISKEYER- 91 d1tf7a1 78 GWDLAKLVDE------------------------------GKLFILDASPDPEGQEVVGG 107 :::::: d1t6na_ 92 ----------FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG-------------- 127 d1tf7a1 108 FDLSALIERINYAIQKY-------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ 160 :::::::::: ::::::::::::::: :::::::::::::: d1t6na_ 128 -----TPGRILALAR--NKSLNLKHIKHFILDECDKMLE----QLDMRRDVQEIFRM--- 173 d1tf7a1 161 --IGATTVMTTERIEEYGPIAR-------YGVEEFVSDNVVILRNVLEGERRRRTLEILK 211 ::::::::: :::::::::::::: d1t6na_ 174 TPHEKQVMMFS-----------ATLSKEIRPVCRKFMQDPMEI----------------- 205 d1tf7a1 212 LRGTSHMKGEYPFTITDHGINIFPLGAMRLT-- 242 d1t6na_ 206 -------------------------------FV 207 TMalign alignment (TM-score: 0.44 Raw score:107.68) d1tf7a1 1 -----EHQAIAKMRTMI-------------------EGFDDISHGGLPIGRSTLVSGTSG 36 ::: :::::::::::: ::::::::: d1t6na_ 1 SGFRD---------FLLKPELLRAIVDCGFEHPSEVQHECIPQAILGM---DVLCQAKSG 48 d1tf7a1 37 TGKTLFSIQFLYNGIIEFDE----PGVFVTFE-ETPQDIIKNARSFGWD-L-AKLV---- 85 ::::::::::::::: ::: :::::::: ::::::::::: :::: : :::: d1t6na_ 49 MGKTAVFVLATLQQL--EPVTGQVSVLVMCHTRELAFQISKEYE-RFSKYMPNVKVAVFF 105 d1tf7a1 86 --------------DEGKLFILDASPDPEGQEVVGGFDLSALIERIN-Y-AIQKYRARRV 129 :::::::: :: : ::::::: : :::: ::::: d1t6na_ 106 GGLSIKKDEEVLKKNCPHIVVG-TP------------G--RILALARNKSLNLK-HIKHF 149 d1tf7a1 130 SIDSVTSVFQQYDASSVVRRELFRLVARLKQI-G-ATTVMTTERIEEYGPIARYGVEEFV 187 :::::::::: : :: ::: ::::::::: : ::::::::: : ::::::: d1t6na_ 150 ILDECDKMLE--Q---LD-MRR-DVQEIFRMTPHEKQVMMFSAT-------L-SKEIRPV 194 d1tf7a1 188 -S--D--NVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLT 242 : : :::::: d1t6na_ 195 CRKFMQDPMEIFV----------------------------------------------- 207 HHsearch alignment (Probability: 0.96 E-value:0.00) d1tf7a1 23 LPIGRSTLVSGTSGTGKTLF-SIQFLYNG-IIEFDEPGVFVTF-EETPQDIIKNARSFGW 79 :::::::::::::::::::: :::::::: ::::::::::::: :::::::::::::::: d1t6na_ 35 AILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSK 94 d1tf7a1 80 DLAKL---VDEGKL-FILDASPDPEGQEVVGGFDLSALIERINY-AIQKYRARRVSIDSV 134 ::::: :::::: ::::::::::::::::::::::::::::: ::::::::::::::: d1t6na_ 95 YMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 154 d1tf7a1 135 TSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTER 171 :::::::: ::::::::::::::::::::::::: d1t6na_ 155 DKMLEQLD----MRRDVQEIFRMTPHEKQVMMFSATL 187