Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tf7a1 | Circadian clock protein KaiC | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | α/β |
| Hit | d1g6oa_ | Hexameric traffic ATPase, HP0525 | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | α/β |
Query <-- 0.638 --> IntermediateDALI alignment (Z-score: 3.2 Raw score:303.50) query 1 ----------------------------------------------------sLQLRLAL 8 ::::::: d1tf7a1 1 ehqaiakmrtmiegfddishgglpigrstlvsgtsgtgktlfsiqflyngiieFDEPGVF 60 query 9 NQID------------------------------------stvgDIAGNAEAILRWTRHS 32 :::: :::::::::::::::: d1tf7a1 61 VTFEetpqdiiknarsfgwdlaklvdegklfildaspdpegqevVGGFDLSALIERINYA 120 query 33 A-EQGAHLVAFPemALTGypvedlalrssfveasrTALRELAARLAEEgfgELPVLVGYL 91 : :::::::::: :::: ::::::::::::: ::::::::: d1tf7a1 121 IqKYRARRVSID--SVTS-----vfqqydassvvrRELFRLVARLKQI---GATTVMTTE 170 query 92 drsesaqpkygqpagaprN-------aaavlhrgRVALTFAKHHLPNYgvfdefryfvpg 144 : :::::::::::::: d1tf7a1 171 ------------------RieeygpiarygveefVSDNVVILRNVLEG------------ 200 query 145 dtmpivrlhgvdialaicedlwqdggrvpaarsagaglllsvnaspyerdkddtrlelvr 204 d1tf7a1 201 ------------------------------------------------------------ 201 query 205 kraqeagcttaylamiggqdelvfdgdsivvdrdgevvarapqfsegcvvldldlpaaea 264 d1tf7a1 201 ------------------------------------------------------------ 201 query 265 epptgvvddglridrlviseeplpayeaelaggyadrldadeevysalvvglrayvakng 324 d1tf7a1 201 ------------------------------------------------------------ 201 query 325 frsvliglsggidsalvaaiacdalgaqnvygvsmpskyssdhskgdaaelarrtglnfr 384 d1tf7a1 201 ------------------------------------------------------------ 201 query 385 tvsiepmfdaymaslgltglaeenlqsrlrgttlmaisnqeghivlapgnkselavgyst 444 d1tf7a1 201 ------------------------------------------------------------ 201 query 445 lygdsvgaygpikdvyktsifrlaewrnraaaergqtppipeasitkpdypvldailely 504 d1tf7a1 201 ------------------------------------------------------------ 201 query 505 vdrdtgadaivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfgkdrrlpitnrw 564 d1tf7a1 201 ----------------------errrrtleilklrgtshmkgeypftitdhginifplga 238 query 565 regh 568 d1tf7a1 239 mrlt 242 FAST alignment (Normalized score: 1.90 Raw score:703.80) query 1 ----------------------------------------------------SLQLRLAL 8 :::::::: d1tf7a1 1 EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 60 query 9 NQIDST-----------------------------------------VGDIAGNAEAILR 27 : ::::::::::::: d1tf7a1 61 V-----TFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIE 115 query 28 WTRHSA-EQGAHLVAFPEMALTGYPVEDLALRSS----------FVEASRTALRELAARL 76 :::::: :::::::::: :::::::::::::::: d1tf7a1 116 RINYAIQKYRARRVSID-----------------SVTSVFQQYDASSVVRRELFRLVARL 158 query 77 AEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRG---------------RVA 121 ::: :::::::::: ::: d1tf7a1 159 KQI---GATTVMTTER--------------------------IEEYGPIARYGVEEFVSD 189 query 122 LTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAG 181 :::::::: d1tf7a1 190 NVVILRNV---------------------------------------------------- 197 query 182 LLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEV 241 d1tf7a1 198 ------------------------------------------------------------ 198 query 242 VARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADR 301 d1tf7a1 198 ------------------------------------------------------------ 198 query 302 LDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPS 361 d1tf7a1 198 ------------------------------------------------------------ 198 query 362 KYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTTLMAI 421 d1tf7a1 198 ------------------------------------------------------------ 198 query 422 SNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQT 481 d1tf7a1 198 ------------------------------------------------------------ 198 query 482 PPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQY 541 d1tf7a1 198 ------------------------------------------------------------ 198 query 542 PPGTKISAKGFGKDRRLPITNRWREGH--------------------------------- 568 d1tf7a1 198 ---------------------------LEGERRRRTLEILKLRGTSHMKGEYPFTITDHG 230 query 569 ------------ 569 d1tf7a1 231 INIFPLGAMRLT 242 TMalign alignment (TM-score: 0.21 Raw score:121.48) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 :: : : d1tf7a1 1 --------------EH--------------------------------Q-A--------- 4 query 61 FVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRV 120 d1tf7a1 5 ------------------------------------------------------------ 5 query 121 ALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGA 180 d1tf7a1 5 ------------------------------------------------------------ 5 query 181 GLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGE 240 ::::: d1tf7a1 5 ------------------------------------------IAKMR------------- 9 query 241 VVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYAD 300 :: d1tf7a1 10 -------TM--------------------------------------------------- 11 query 301 RLDADEEVYSALVVGLRAYVAKN--------GFRSVLIGLSGG-IDSALVAAIACDALGA 351 :::::::::::: ::: : : :::::::::::::::: d1tf7a1 12 ----IEGFDDISHGGL-PIG--RSTLVSGTS-----------GTGKTLFSIQFLYNGIIE 53 query 352 -QNVYGVSMPSKYSSDHSKGDAAELAR--RTGL--NF-----RTVSIE-PMF--DAYMAS 398 ::::::::: : ::::::::::: :::: :: :::::: : d1tf7a1 54 FDEPGVFVTF---E--ETPQDIIKNARSFGWDLAKLVDEGKLFILDASP--DPE------ 100 query 399 LGLTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSE-L-----AV--GYSTL-YGDS 449 ::: ::::::::::::::::::::::::::::::::: : : ::::: ::: d1tf7a1 101 --GQE-VVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDA-SSVVRRELF-RLV 155 query 450 -VG----AYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELY 504 :: :::::: :: ::: ::::: d1tf7a1 156 ARLKQIGATTVMT--TE--------------------------------RIE-EYGPI-- 178 query 505 VDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTK----------------IS 548 : : :: :: ::: : :::: :: d1tf7a1 179 A---------------------R--YG--VE-EFV-S-DNVVILRNVLEGERRRRTLEIL 210 query 549 AKGFGK----------------------------DRRLPITNRWREGH 568 : : :: d1tf7a1 211 K-L-RGTSHMKGEYPFTITDHGINIFPLGAMRLT-------------- 242 HHsearch alignment (Probability: 0.02 E-value:0.74) query 324 GFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTG--L 381 ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : d1tf7a1 26 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLV 85 query 382 NFRTVSIEPMFDAYMASLGLTGLAEENLQSRLRGTT 417 :::::::::::::::::::::::::::::::::::: d1tf7a1 86 DEGKLFILDASPDPEGQEVVGGFDLSALIERINYAI 121
Intermediate <-- 1.762 --> HitDALI alignment (Z-score: 7.7 Raw score:748.70) d1tf7a1 1 ------------------------------------------------------------ 1 d1g6oa_ 1 lsaedkkfleveralkeaalnplrhateelfgdflkmeniteicyngnkvvwvlknngew 60 d1tf7a1 1 ------------------------------------------------------------ 1 d1g6oa_ 61 qpfdvrdrkafslsrlmhfarccasfkkktidnyenpilssnlangervqivlspvtvnd 120 d1tf7a1 1 -----ehqaiakmrtmIEGF-----------dDISHGGL----pIGRSTLVSGTSGTGKT 40 :::: ::::::: :::::::::::::::: d1g6oa_ 121 etisisiripskttypHSFFeeqgfynlldnkEQAISAIkdgiaIGKNVIVCGGTGSGKT 180 d1tf7a1 41 LFSIQFLYNGIieFDEPGVFVTFEetpQDIIknarsfgwdLAKLvdeGKLFILDaSPDPe 100 ::::::::::: ::::::::::: :::: :::: ::::::: :::: d1g6oa_ 181 TYIKSIMEFIP--KEERIISIEDT---EEIV---------FKHH---KNYTQLF-FGGN- 221 d1tf7a1 101 gqevvggfDLSALIERINYAIqkyrARRVSIDSvTSVFqqydassvvrrELFRLVARLKQ 160 ::::::::::::: :::::::: :::: ::::::::::: d1g6oa_ 222 -------iTSADCLKSCLRMR----PDRIILGE-LRSS-----------EAYDFYNVLCS 258 d1tf7a1 161 IGATTVMTTERIeeyGPIArYGVE----------------------efVSDNVVILRNVl 198 :::::::::::: :::: :::: ::::::::::: d1g6oa_ 259 GHKGTLTTLHAG--sSEEA-FIRLanmsssnsaarnikfesliegfkdLIDMIVHINHH- 314 d1tf7a1 199 egerrrRTLEILKLRgtshmkgeypftitdhginifplgamrlt 242 ::::::::: d1g6oa_ 315 ------KQCDEFYIK----------------------------- 323 FAST alignment (Normalized score: 4.33 Raw score:1211.00) d1tf7a1 1 EHQAIAKMRTMI------------------------------------------------ 12 d1g6oa_ 1 ------------LSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKMENITEICYNGN 48 d1tf7a1 13 ------------------------------------------------------------ 13 d1g6oa_ 49 KVVWVLKNNGEWQPFDVRDRKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLANGER 108 d1tf7a1 13 ----------------------------------EGFDDISHGGLP-------------- 24 :::::::: d1g6oa_ 109 VQIVLSPVTVNDETISISIRIPSKTTYPHSFFEEQGFYNLLD----NKEQAISAIKDGIA 164 d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFLYNGIIE--FDEPGVFVTFEETPQDIIKNARSFGWDL- 81 ::::::::::::::::::::::::: :::::::::: d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEF----IPKEERIISIED------------------T 202 d1tf7a1 82 ----AKLVDEG-KLFILDASPDPEGQEVVGGF----DLSALIERINYAIQKYRARRVSID 132 :::: ::::::: ::::::::::: ::::::::: d1g6oa_ 203 EEIVFKHH---KNYTQLFF-------------GGNITSADCLKSCLR----MRPDRIILG 242 d1tf7a1 133 SVTSVFQQYDAS-SVVRRELFRLVARLKQI--GATTVMTTERIEEYGPIARY-------- 181 :: :::::::::::: :::::::::: d1g6oa_ 243 EL----------RSSEAYDFYNVLC-----SGHKGTLTTLHA----------GSSEEAFI 277 d1tf7a1 182 ---------------------GVEEFVSDNVVILRNVLEGERRRRTLEILKLRGTSHMKG 220 :::::::::::::: ::::: d1g6oa_ 278 RLANMSSSNSAARNIKFESLIEGFKDLIDMIVHIN-------HHKQC------------- 317 d1tf7a1 221 EYPFTITDHGINIFPLGAMRLT------ 242 d1g6oa_ 318 ----------------------DEFYIK 323 TMalign alignment (TM-score: 0.49 Raw score:117.49) d1tf7a1 1 ------------------------------------------------------------ 1 d1g6oa_ 1 LSAEDKKFLEVERALKEAALNPLRHATEELFGDFLKMENITEICYNGNKVVWVLKNNGEW 60 d1tf7a1 1 ------------------------------------------------------------ 1 d1g6oa_ 61 QPFDVRDRKAFSLSRLMHFARCCASFKKKTIDNYENPILSSNLANGERVQIVLSPVTVND 120 d1tf7a1 1 ---------------EHQAIAKMRTMIE--------------G-FDDISHGGLPIGRSTL 30 ::: : :::::::::::::::: d1g6oa_ 121 ETISISIRIPSKTTY----------PHSFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVI 170 d1tf7a1 31 VSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKL 90 :::::::::::::::::::: :::::::::: :: : :: : ::: : : :: d1g6oa_ 171 VCGGTGSGKTTYIKSIMEFI--PKEERIISIE-DT-E--EI--V----FKH--H--K-NY 213 d1tf7a1 91 FILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRE 150 ::::: :: :: : :: ::::::::: : :::::::::: : : : d1g6oa_ 214 TQLFF-GG--NI--T---SA-DCLKSCLRM-R---PDRIILGELR--S--------S--E 248 d1tf7a1 151 LFRLVARLKQIGATTVMTTERIEEYGPIARYGVEE-----------------F--VS--D 189 ::::::::::::::::::::: : ::::: ::::: : :: : d1g6oa_ 249 AYDFYNVLCSGHKGTLTTLHA-G-SSEEA-FIRLANMSSSNSAARNIKFESLIEGFKDLI 305 d1tf7a1 190 NVVILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFPLGAMRLT 242 :::::::: :::::::::: d1g6oa_ 306 DMIVHINH-----HKQCDEFYIK------------------------------ 323 HHsearch alignment (Probability: 0.96 E-value:0.00) d1tf7a1 17 DISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARS 76 ::::::::::::::::::::::::::::::: : :::::::: :::::::::::::::: d1g6oa_ 157 SAIKDGIAIGKNVIVCGGTGSGKTTYIKSIM-E-FIPKEERI--ISIEDTEEIVFKHHKN 212 d1tf7a1 77 FGWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTS 136 :::::::::::::: ::::::::::::::::::: d1g6oa_ 213 ----------------------YTQLFFGGNITSAD----CLKSCLRMRPDRIILGELR- 245 d1tf7a1 137 VFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIA 179 :: :::::::::::::::::::::::::::::: d1g6oa_ 246 -------SS----EAYDFYNVLCSGHKGTLTTLHAGSSEEAFI 277