Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tx2a_ | Dihydropteroate synthetase | Dihydropteroate synthetase-like | TIM beta/alpha-barrel | α/β |
| Hit | d1e4mm_ | Plant beta-glucosidase (myrosinase) | (Trans)glycosidases | TIM beta/alpha-barrel | α/β |
Query <-- 0.687 --> IntermediateDALI alignment (Z-score: 2.9 Raw score:483.20) query 1 ---------------SLQLRLALN----qidstvgdiagnAEAILRWTRHSAEQGAHLVA 41 ::::::::: :::::::::::::::::::: d1tx2a_ 1 kwdydlrcgeytlnlNEKTLIMGIlnvtpdsfsdggsyneVDAAVRHAKEMRDEGAHIID 60 query 42 fpemALTGypvedlalrSSFVEASRTALRELAARLAeEGFGeLPVLVGYldrsesaqpky 101 :::: ::::::::::::::::::: :::: ::::::: d1tx2a_ 61 ---iGGES-------faKVSVEEEIKRVVPMIQAVS-KEVK-LPISIDT----------- 97 query 102 gqpagaprnaaavlhrGRVALT-FAKHhlpnygvfdefryfvPGDT-mpivrlhgvdiaL 159 :::::: :::: :::: : d1tx2a_ 98 -----ykaevakqaieAGAHIInDIWG--------------aKAEPkiaevaahydvpiI 138 query 160 AICE---------dlwQDGGR----vpaarsagaglllsvnaspyerdkDDTRLELVRKR 206 :::: ::::: ::::::::::: d1tx2a_ 139 LMHNrdnmnyrnlmadMIADLydsikiakdagvrdeniildpgigfaktPEQNLEAMRNL 198 query 207 aQEAG---ctTAYLAmiggqdelvFDGD------------------sivVDRDGevvara 245 :::: ::::: :::: ::::: d1tx2a_ 199 -EQLNvlgypVLLGT-------srKSFIghvldlpveerlegtgatvclGIEKG------ 244 query 246 pqfsegCVVLdldlpaaeaepptgvvddglridrlviseeplpayeaeLAGGyadrldad 305 :::: :::: d1tx2a_ 245 cefvrvHDVK-----------------------------------emsRMAK-------- 261 query 306 eevysalvvglrayvakngfrsvliglsggidsalvaaiacdalgaqnvygvsmpskyss 365 d1tx2a_ 262 ------------------------------------------------------------ 262 query 366 dhskgdaaelarrtglnfrtvsiepmfdaymaslgltglaeenlqsrlrgttlmaisnqe 425 d1tx2a_ 262 ------------------------------------------------------------ 262 query 426 ghivlapgnkselavgystlygdsvgaygpikdvyktsifrlaewrnraaaergqtppip 485 d1tx2a_ 262 ------------------------------------------------------------ 262 query 486 easitkpdypvldailelyvdrdtgadaivaagydrelvvktlrmvdtaeykrrqyppgt 545 d1tx2a_ 262 ------------------------------------------------------------ 262 query 546 kisakgfgkdrrlpitnrwregh 568 d1tx2a_ 262 ---------------mmdamigk 269 FAST alignment (Normalized score: 1.23 Raw score:478.70) query 1 ----------------SLQLRLALNQIDSTVGD---IAGNAEAILRWTRHSAEQGAHLVA 41 ::::::::::::::::: :::::::::::::::::::::::: d1tx2a_ 1 KWDYDLRCGEYTLNLNEKTLIMGILNVTPDSFSDGGSYNEVDAAVRHAKEMRDEGAHIID 60 query 42 FPEMALTGYPVEDLALRSSFVEASRTALRELAARLAEEGF-------------------- 81 :: d1tx2a_ 61 IG--------------------------------------GESFAKVSVEEEIKRVVPMI 82 query 82 ------GELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVF 135 ::::::: d1tx2a_ 83 QAVSKEVKLPISI----------------------------------------------- 95 query 136 DEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGAGLLLSVNASPYERDK 195 d1tx2a_ 96 ------------------------------------------------------------ 96 query 196 DDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQFSEGCVVL 255 d1tx2a_ 96 ------------------------------------------------------------ 96 query 256 DLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADRLDADEEVYSALVVG 315 d1tx2a_ 96 ------------------------------------------------------------ 96 query 316 LRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYGVS----------------- 358 d1tx2a_ 96 -------------------------------------------DTYKAEVAKQAIEAGAH 112 query 359 ----------------------------MPSKYSSDHSKGDAAELARRTGLNFRTVSIEP 390 :::: d1tx2a_ 113 IINDIWGAKAEPKIAEVAAHYDVPIILMHNRD---------------------------- 144 query 391 MFDAYMASLG----LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLY 446 :::::::::::::::::::: d1tx2a_ 145 ----------NMNYRNLMADMIADLYDSIKIAKD-------------------------- 168 query 447 GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVD 506 d1tx2a_ 169 ------------------------------------------------------------ 169 query 507 RDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWRE 566 d1tx2a_ 169 ------------------------------------------------------------ 169 query 567 GH---------------------------------------------------------- 568 d1tx2a_ 169 --AGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLPV 226 query 569 ------------------------------------------- 569 d1tx2a_ 227 EERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAMIGK 269 TMalign alignment (TM-score: 0.25 Raw score:142.24) query 1 --SLQL------RLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPV 52 :::: ::: : :::: :::: ::: d1tx2a_ 1 KWDYDLRCGEYTLNL------------------------N-EKTL--IMGI--LNV---- 27 query 53 EDLALRSSFV--E-ASRTALRELAARLAEEGFGELPVLVGYLDR---SESAQPKYGQPAG 106 :: ::::: : :::::::::::::: ::: :::::::::: :: : : d1tx2a_ 28 --TP-DSFSDGGSYNEVDAAVRHAKEMR-DEG--AHIIDIGGESFAK---VS--V-E--- 72 query 107 APR-NAA-AV--LHRGRV-ALTFAKHHLPNYGVFDEFRYFVPGDTMPIV-RLHGVDIALA 160 ::: ::: :: :::::: ::::::::: :::::::: : ::::: d1tx2a_ 73 EEIKRVVPMIQAVSKEVKLPISIDTYKA-------------EVAKQAIEA-G---AHIIN 115 query 161 ICEDLWQDGGRVPAARSAGAGLLLSVNASP-YERD-K---DD-TRLELVRKRAQE--AGC 212 :::::::::::::::::: : ::::::::: :::: : :: :::::::::::: ::: d1tx2a_ 116 DIWGAKAEPKIAEVAAHY-D-VPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRD 173 query 213 T-TAYLAMIGG-QDELV-FD--GD--SIVVDRDGEVVARAPQFSE-GCVVLDLDLPAAEA 264 : ::::::::: ::: :: :: ::::: :::::::: ::: d1tx2a_ 174 ENIILDPGIGFA--KTPEQNLEAMRNLEQLN--VLGYPVLL-GTSR-------------- 214 query 265 EPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYADRLDADEEVYSALVVGLRAYVAKNG 324 :::::::: ::::: d1tx2a_ 215 ----------------------------------------------KSFIGHVL-DLPVE 227 query 325 FR----------------------------------------SVLIGLSGGIDSALVAAI 344 :: d1tx2a_ 228 ERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAMIGK------------------ 269 query 345 ACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGL 404 d1tx2a_ 270 ------------------------------------------------------------ 270 query 405 AEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSI 464 d1tx2a_ 270 ------------------------------------------------------------ 270 query 465 FRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELV 524 d1tx2a_ 270 ------------------------------------------------------------ 270 query 525 VKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 568 d1tx2a_ 270 -------------------------------------------- 270 HHsearch alignment (Probability: 0.05 E-value:0.02) query 494 YPVLDAILELYVDRDTGADAIV---AAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAK 550 :::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: d1tx2a_ 156 IADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRK 215 query 551 GF 552 :: d1tx2a_ 216 SF 217
Intermediate <-- 0.680 --> HitDALI alignment (Z-score: 9.7 Raw score:1223.80) d1tx2a_ 1 --------kwdydlrcgeytlnlNEKTLIMGILNV--TPDSFSD---------------- 34 :::::::::::: ::::::: d1e4mm_ 1 eitcqenlpftcgntdalnsssfSSDFIFGVASSAyqIEGTIGRglniwdgfthrypnks 60 d1tx2a_ 35 -------ggsyNEVDAAVRHAKEMRDEGAHIIDIGGEsfakvsvEEEIK----------- 76 :::::::::::::::::::::::::: ::::: d1e4mm_ 61 gpdhgngdttcDSFSYWQKDIDVLDELNATGYRFSIA-------WSRIIprgkrsrgvne 113 d1tx2a_ 77 rvVPMIQAVSKEVK---LPISIDTY-----------------------KAEVAKQAIEAG 110 :::::::::::: :::::::: :::::::::::: d1e4mm_ 114 kgIDYYHGLISGLIkkgITPFVTLFhwdlpqtlqdeyegfldpqiiddFKDYADLCFEEF 173 d1tx2a_ 111 ---AHIINDIW------------------------------------------gaKAEP- 124 :::::::: :::: d1e4mm_ 174 gdsVKYWLTINqlysvptrgygsaldapgrcsptvdpscyagnsstepyivahhqLLAHa 233 d1tx2a_ 125 KIAEVAAH----YDVPIILMHN-------------rdnmNYRNLMADMIADLYDS----- 162 :::::::: :::::::::: :::::::::::::::: d1e4mm_ 234 KVVDLYRKnythQGGKIGPTMItrwflpyndtdrhsiaaTERMKEFFLGWFMGPLtngty 293 d1tx2a_ 163 ----------------------IKIAkdagvrdenIILDPGIGfaKTPE----------- 189 :::: :::::::: :::: d1e4mm_ 294 pqimidtvgerlpsfspeesnlVKGS--------yDFLGLNYY--FTQYaqpspnpvnst 343 d1tx2a_ 190 ---------------------------------------qnLEAMRNLEQLNV--LGYPV 208 :::::::::::: ::::: d1e4mm_ 344 nhtammdagakltyinasghyigplfekdkadstdniyyypKGIYSVMDYFKNkyYNPLI 403 d1tx2a_ 209 LL-GTSRK--sfighvldlPVEERLEGTGATVCLGIEKG------CEFVRVH-------- 251 :: ::::: :::::::::::::::::::: ::::::: d1e4mm_ 404 YVtENGIStpgdenrnqsmLDYTRIDYLCSHLCFLNKVIkekdvnVKGYLAWalgdnyef 463 d1tx2a_ 252 -------------------------dvKEMSRMAKMmdamigk 269 ::::::::: d1e4mm_ 464 nkgftvrfglsyidwnnvtdrdlkksgQWYQSFISP------- 499 FAST alignment (Normalized score: 4.95 Raw score:1814.00) d1tx2a_ 1 KWDYDLRCGEYTLNLNE-------------------------KTLIMGILNV---TPDSF 32 ::::::::: ::::: d1e4mm_ 1 -----------------EITCQENLPFTCGNTDALNSSSFSSDFIFGVASS-AYQIEGTI 42 d1tx2a_ 33 SDGGSYN---------------------------------EVDAAVRHAKEMRDEGAHII 59 ::::::::::: :::::: d1e4mm_ 43 -------GRGLNIWDGFTHRYPNKSGPDHGNGDTTCDSFSYWQKDIDVLDE---LNATGY 92 d1tx2a_ 60 DIGGESFAKVS----------------VEEEIKRVVPMIQAVSKEVKLPISIDTY----- 98 ::: :::::::::::::::: ::::::::: d1e4mm_ 93 RFS--------IAWSRIIPRGKRSRGVNEKGIDYYHGLISGLI-KKGITPFVT--LFHWD 141 d1tx2a_ 99 --------------------KAEVAKQAIE---AGAHIINDIWGAKA------------- 122 :::::::::: ::::::: d1e4mm_ 142 LPQTLQDEYEGFLDPQIIDDFKDYADLCFEEFGDSVKYWL-------TINQLYSVPTRGY 194 d1tx2a_ 123 ------------------------------EPKIAEVAAH-----------YDVPIILMH 141 :::::::::: :::::::: d1e4mm_ 195 GSALDAPGRCSPTVDPSCYAGNSSTEPYIVAHHQLLAHAKVVDLYRKNYTHQGGKIGPT- 253 d1tx2a_ 142 NRDNMNYR------------------NLMADMIADLYDSIKIAKDAGVRDEN-------- 175 :::::::::::::::::: d1e4mm_ 254 --------MITRWFLPYNDTDRHSIAATERMKEFFLGWFMGPLT--------NGTYPQIM 297 d1tx2a_ 176 -----------------------IILDPGIGFAK-------------------------- 186 :::::: d1e4mm_ 298 IDTVGERLPSFSPEESNLVKGSYDFLGLN-----YYFTQYAQPSPNPVNSTNHTAMMDAG 352 d1tx2a_ 187 ------------------------------TPEQNLEAMRNLEQLNV--LGYPVLLGTSR 214 :::::::: :::::: ::::::: d1e4mm_ 353 AKLTYINASGHYIGPLFEKDKADSTDNIYYYPKGIYSV---MDYFKNKYYNPLIYV---- 405 d1tx2a_ 215 KSFIGHVLDLPVE--------------------ERLEGTGATVCLGIE------KGCEFV 248 ::::::::::::::: :::::: d1e4mm_ 406 -------------TENGISTPGDENRNQSMLDYTRIDYLCSHLCFLNKVIKEKDVNVKGY 452 d1tx2a_ 249 RVH-----------------------------------DVKEMSRMAKMMDAMIGK- 269 : :::::::::: d1e4mm_ 453 L--AWALGDNYEFNKGFTVRFGLSYIDWNNVTDRDLKKSGQWYQSFIS--------P 499 TMalign alignment (TM-score: 0.53 Raw score:143.15) d1tx2a_ 1 -----------------------KWDYDLRCGEYTLNLNEKTLIMGILN--VTPD----- 30 ::::::::::: :::: d1e4mm_ 1 EITCQENLPFTCGNTDALNSSSF---------------SSDFIFGVASSAYQIEGTIGRG 45 d1tx2a_ 31 -----------------------S-FSDGGSYNEVDAAVRHAKEMRDEGAHIIDIGGESF 66 : :::::: ::::::::::::: ::::::::: d1e4mm_ 46 LNIWDGFTHRYPNKSGPDHGNGDTTCDSFSY--WQKDIDVLDELNA----TGYRFSIAW- 98 d1tx2a_ 67 AKVSV----------E-EEIKRVVPMIQAVSKEVKLPISIDTYK---------------- 99 ::: : :::::::::::::::: :::::::::: d1e4mm_ 99 --SRIIPRGKRSRGVNEKGIDYYHGLISGLIKK-GITPFVTLFHWDLPQTLQDEYEGFLD 155 d1tx2a_ 100 --AEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAH-YD--VPIILM--H--NR--DN--- 145 ::::::::::::::: :: :::::: : :: :: d1e4mm_ 156 PQ------------------IIDDFKDYADLCFEEFGDSVKYWLTINQLYSVPTRGYGSA 197 d1tx2a_ 146 ----------------------MNYRNLMADMIADLYDSIKIAKDAGVRD-ENIILDPGI 182 :::::: :::::::::::::::: :::: ::::::::: d1e4mm_ 198 LDAPGRCSPTVDPSCYAGNSSTEPYIVA-HHQLLAHAKVVDLYRK-NYTHQGGKIGPTMI 255 d1tx2a_ 183 G------------------FAKTPEQNLEAMRNLEQ-LNV-------------------- 203 : :::::::::::: ::: d1e4mm_ 256 TRWFLPYNDTDRHSIAATE-----RMKEFFLGWFMGPLTNGTYPQIMIDTVGERLPSFSP 310 d1tx2a_ 204 ------LG-YPVLLGTSRKSFI----------------------GHVL----------DL 224 :: ::::::::::::: ::: :: d1e4mm_ 311 EESNLVKGSYDFLGLNYYFTQYAQPSPNPVNSTNHTAMMDAGAK-LTYINASGHYIGPLF 369 d1tx2a_ 225 PVE------ERLEGTGATVCLGIEKG-----C-EFVRVHD-------------------- 252 ::: ::::::::::::::::: : ::::::: d1e4mm_ 370 EKDKADSTDNIYYYPKGIYSVMDYFKNKYYNPLIYVTENGISTPGDENRNQSMLDYTRID 429 d1tx2a_ 253 -VKEMSRMAKMMDAMIGK------------------------------------------ 269 ::::::::::::::::: d1e4mm_ 430 YLCSHLCFLNKVIKEKDVNVKGYLAWALGDNYEFNKGFTVRFGLSYIDWNNVTDRDLKKS 489 d1tx2a_ 270 ---------- 270 d1e4mm_ 490 GQWYQSFISP 499 HHsearch alignment (Probability: 0.02 E-value:0.32) d1tx2a_ 42 DAAVRHAKEMRDEGAHIIDIG 62 ::::::::::::::::::::: d1e4mm_ 75 SYWQKDIDVLDELNATGYRFS 95