Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1jmva_ | Universal stress protein A, UspA | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1enya_ | Enoyl-ACP reductase | NAD(P)-binding Rossmann-fold domains | NAD(P)-binding Rossmann-fold domains | α/β |
Query <-- 0.827 --> IntermediateDALI alignment (Z-score: 7.9 Raw score:512.80) query 1 slqlrlalnqidstvgdiagnaeailrwtrhsaeqgahlvafpemaltgypvedlalrss 60 d1jmva_ 1 ------------------------------------------------------------ 1 query 61 fveasrtalrelaarlaeegfgelpvlvgyldrsesaqpkygqpagaprnaaavlhrgrv 120 d1jmva_ 1 ------------------------------------------------------------ 1 query 121 altfakhhlpnygvfdefryfvpgdtmpivrlhgvdialaicedlwqdggrvpaarsaga 180 d1jmva_ 1 ------------------------------------------------------------ 1 query 181 glllsvnaspyerdkddtrlelvrkraqeagcttaylamiggqdelvfdgdsivvdrdge 240 d1jmva_ 1 ------------------------------------------------------------ 1 query 241 vvarapqfsegcvvldldlpaaeaepptgvvddglridrlviseeplpayeaelaggyad 300 d1jmva_ 1 ------------------------------------------------------------ 1 query 301 rldadeevysalvvglrayvaknGFRSVLIGLSGGIDSALVAAIACDALG--aqNVYGVS 358 ::::::::::::::::::::::::::: :::::: d1jmva_ 1 -----------------------MYKHILVAVDLSEESPILLKKAVGIAKrhdaKLSIIH 37 query 359 MPS------------------kysSDHSKGDAAELARRTG---lNFRTVSIepmfdayma 397 ::: :::::::::::::::: ::::::: d1jmva_ 38 VDVnfsdlytglidvnmssmqdriSTETQKALLDLAESVDypisEKLSGSG--------- 88 query 398 slgltglaeenlqsrLRGTTLMAISNQEGH-IVLAPGNKseLAVGYS------tlygdsv 450 ::::::::::::::: :::::::: :::::: d1jmva_ 89 ---------------DLGQVLSDAIEQYDVdLLVTGHHQ--DFWSKLmsstrqvmntiki 131 query 451 gAYGPiKDVYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtg 510 :::: :::: d1jmva_ 132 dMLVV-PLRD-------------------------------------------------- 140 query 511 adaivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfgkdrrlpitnrwregh 568 d1jmva_ 141 ---------------------------------------------------------- 141 FAST alignment (Normalized score: 3.30 Raw score:930.50) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 d1jmva_ 1 ------------------------------------------------------------ 1 query 61 FVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRV 120 d1jmva_ 1 ------------------------------------------------------------ 1 query 121 ALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGA 180 d1jmva_ 1 ------------------------------------------------------------ 1 query 181 GLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGE 240 d1jmva_ 1 ------------------------------------------------------------ 1 query 241 VVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYAD 300 d1jmva_ 1 ------------------------------------------------------------ 1 query 301 RLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQ------NV 354 ::::::::::::::::::::::::: :: d1jmva_ 1 -----------------------MYKHILVAVDLSEESPILLKKAVGI----AKRHDAKL 33 query 355 YGVSMPSKYSS-----------------------DHSKGDAAELAR--RTGL-NFRTVSI 388 :::::: :::::::::::: :::: ::::: d1jmva_ 34 SIIHVD-----VNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKLSG-- 86 query 389 EPMFDAYMASLGLTGLAEENLQSR--LRGTTLMAISNQEG-HIVLAPGNKSELAVGYSTL 445 :::::::::::::: :::::::: d1jmva_ 87 ------------------------SGDLGQVLSDAIEQYDVDLLVTGHH----------- 111 query 446 Y-------------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKP 492 :::::: d1jmva_ 112 -QDFWSKLMSSTRQVMNTIK---------------------------------------- 130 query 493 DYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGF 552 d1jmva_ 131 ------------------------------------------------------------ 131 query 553 GKDRRLPITNRWREGH---------- 568 d1jmva_ 131 ----------------IDMLVVPLRD 140 TMalign alignment (TM-score: 0.17 Raw score:95.23) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 d1jmva_ 1 ------------------------------------------------------------ 1 query 61 FVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRV 120 d1jmva_ 1 ------------------------------------------------------------ 1 query 121 ALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGA 180 d1jmva_ 1 ------------------------------------------------------------ 1 query 181 GLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGE 240 d1jmva_ 1 ------------------------------------------------------------ 1 query 241 VVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYAD 300 d1jmva_ 1 ------------------------------------------------------------ 1 query 301 RLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALG--AQNVYGVS 358 ::::::::::::::::::::::::::: :::::::: d1jmva_ 1 -----------------------MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIH 37 query 359 MPSK---------------------YSSDHSKGDAAELARRT--GLNFRTVSIEPMFDAY 395 :::: :: :::::::::::: ::::::::: d1jmva_ 38 VDVNFSDLYTGLIDVNMSSMQDRIS--TE-TQKALLDLAESVDYPISEKLSGS------- 87 query 396 MASLGLTGLAEENLQSRLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLYGDS-VG-- 451 : ::::::::::::::: ::::::: ::::::::: ::: :: d1jmva_ 88 --------------G--DLGQVLSDAIEQYDVDLLVTGHH-QDFWSKLMS--STRQVMNT 128 query 452 ----AYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDR 507 ::: :: : :: d1jmva_ 129 IKIDMLV-VP-L-RD--------------------------------------------- 140 query 508 DTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREG 567 d1jmva_ 141 ------------------------------------------------------------ 141 query 568 H 568 d1jmva_ 141 - 141 HHsearch alignment (Probability: 0.04 E-value:0.35) query 19 AGNAEAILRWTRHSAEQGAHLVAF------PEMALTGYPVEDLALRSSFVEASRTALREL 72 :::::::::::::::::::::::: :::::::::::::::::::::::::::::: d1jmva_ 13 EESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDL 72 query 73 AAR 75 ::: d1jmva_ 73 AES 75
Intermediate <-- 1.085 --> HitDALI alignment (Z-score: 5.6 Raw score:544.80) d1jmva_ 1 ----MYKHILVAVDLSEESpILLKKAVGIAKRhDAKLSIIHVDvnfsdlytglidvnmss 56 ::::::::::::::: :::::::::::: :::::::::: d1enya_ 1 agllDGKRILVSGIITDSS-IAFHIARVAQEQ-GAQLVLTGFD----------------- 41 d1jmva_ 57 mqdristeTQKALLDLAESVDYPIsEKLSGS---gDLGQVLSDAIEQY-----DVDLLVT 108 :::::::::::::::: :::::: ::::::::::::: ::::::: d1enya_ 42 --------RLRLIQRITDRLPAKA-PLLELDvqneEHLASLAGRVTEAigagnKLDGVVH 92 d1jmva_ 109 GHHQD-------------------FWSKL-MSSTRQVMNTIK------IDMLVVP----- 137 ::::: ::::: :::::::::::: ::::::: d1enya_ 93 SIGFMpqtgmginpffdapyadvsKGIHIsAYSYASMAKALLpimnpgGSIVGMDfdpsr 152 d1jmva_ 138 ------------------------------------------------------------ 138 d1enya_ 153 ampaynwmtvaksalesvnrfvareagkygvrsnlvaagpirtlamsaivggalgeeaga 212 d1jmva_ 138 -----------------------------------------------------lrd 140 d1enya_ 213 qiqlleegwdqrapigwnmkdatpvaktvcallsdwlpattgdiiyadggahtqll 268 FAST alignment (Normalized score: 4.72 Raw score:915.00) d1jmva_ 1 MY------KHILVAVDLSEES-------PILLKKAVGIAKRHDAKLSIIHVDVNFSDLYT 47 ::::: :::::::::::: ::::::::: d1enya_ 1 --AGLLDGKRILV--------SGIITDSSIAFHIARVAQE-QGAQLVLTG---------- 39 d1jmva_ 48 GLIDVNMSSMQDRISTE--TQKALLDLAESVDYPISEKLSGSG-----DLGQVLSDAIEQ 100 ::::::::::::::: :::::: :::::::::::: d1enya_ 40 -----------------FDRLRLIQRITDRLPAK-APLLEL--DVQNEEHLASLAGRVTE 79 d1jmva_ 101 -----YDVDLLVTGHHQD--------------------FWSK----LMSSTRQVMNTIK- 130 ::::::::: :::: ::::::::::: d1enya_ 80 AIGAGNKLDGVVHS----IGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKA--L 133 d1jmva_ 131 -------IDMLVVPLRD------------------------------------------- 140 :::::: d1enya_ 134 LPIMNPGGSIVGM----DFDPSRAMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVA 189 d1jmva_ 141 ------------------------------------------------------------ 141 d1enya_ 190 AGPIRTLAMSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSDWL 249 d1jmva_ 141 ------------------- 141 d1enya_ 250 PATTGDIIYADGGAHTQLL 268 TMalign alignment (TM-score: 0.58 Raw score:81.57) d1jmva_ 1 ---M-YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSS 56 : :::::::::: :::::::::::::::: :::::::::: d1enya_ 1 AGLLDGKRILVSGII-TDSSIAFHIARVAQEQ-GAQLVLTGFD----------------- 41 d1jmva_ 57 MQDRISTETQKALLDLAESVDYPISEKLSGS--GD-LGQVLSDAIEQ-Y---D-VDLLVT 108 :::::::::::: :::::::::: :: ::::::::::: : : :::::: d1enya_ 42 --------RLRLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVH 92 d1jmva_ 109 GHHQD-----------------F--WSK--LMSSTRQVMNTIK--I----DMLVVP---- 137 ::::: : :: ::::::::::::: : :::::: d1enya_ 93 SIGFMPQTGMGINPFFDAPYADVSK-GIHISAYSYASMAKALLPIMNPGGSIVGMDFDPS 151 d1jmva_ 138 --------------------------------------L--R----D------------- 140 : : : d1enya_ 152 RAMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAG 211 d1jmva_ 141 --------------------------------------------------------- 141 d1enya_ 212 AQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGAHTQLL 268 HHsearch alignment (Probability: 0.07 E-value:0.10) d1jmva_ 22 AVGIAKRHDAKLSIIH 37 ::::::: :::::::: d1enya_ 25 ARVAQEQ-GAQLVLTG 39