Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1jmva_ | Universal stress protein A, UspA | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1te2a_ | Phosphatase YniC | HAD-like | HAD-like | α/β |
Query <-- 0.827 --> IntermediateDALI alignment (Z-score: 7.9 Raw score:512.80) query 1 slqlrlalnqidstvgdiagnaeailrwtrhsaeqgahlvafpemaltgypvedlalrss 60 d1jmva_ 1 ------------------------------------------------------------ 1 query 61 fveasrtalrelaarlaeegfgelpvlvgyldrsesaqpkygqpagaprnaaavlhrgrv 120 d1jmva_ 1 ------------------------------------------------------------ 1 query 121 altfakhhlpnygvfdefryfvpgdtmpivrlhgvdialaicedlwqdggrvpaarsaga 180 d1jmva_ 1 ------------------------------------------------------------ 1 query 181 glllsvnaspyerdkddtrlelvrkraqeagcttaylamiggqdelvfdgdsivvdrdge 240 d1jmva_ 1 ------------------------------------------------------------ 1 query 241 vvarapqfsegcvvldldlpaaeaepptgvvddglridrlviseeplpayeaelaggyad 300 d1jmva_ 1 ------------------------------------------------------------ 1 query 301 rldadeevysalvvglrayvaknGFRSVLIGLSGGIDSALVAAIACDALG--aqNVYGVS 358 ::::::::::::::::::::::::::: :::::: d1jmva_ 1 -----------------------MYKHILVAVDLSEESPILLKKAVGIAKrhdaKLSIIH 37 query 359 MPS------------------kysSDHSKGDAAELARRTG---lNFRTVSIepmfdayma 397 ::: :::::::::::::::: ::::::: d1jmva_ 38 VDVnfsdlytglidvnmssmqdriSTETQKALLDLAESVDypisEKLSGSG--------- 88 query 398 slgltglaeenlqsrLRGTTLMAISNQEGH-IVLAPGNKseLAVGYS------tlygdsv 450 ::::::::::::::: :::::::: :::::: d1jmva_ 89 ---------------DLGQVLSDAIEQYDVdLLVTGHHQ--DFWSKLmsstrqvmntiki 131 query 451 gAYGPiKDVYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtg 510 :::: :::: d1jmva_ 132 dMLVV-PLRD-------------------------------------------------- 140 query 511 adaivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfgkdrrlpitnrwregh 568 d1jmva_ 141 ---------------------------------------------------------- 141 FAST alignment (Normalized score: 3.30 Raw score:930.50) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 d1jmva_ 1 ------------------------------------------------------------ 1 query 61 FVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRV 120 d1jmva_ 1 ------------------------------------------------------------ 1 query 121 ALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGA 180 d1jmva_ 1 ------------------------------------------------------------ 1 query 181 GLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGE 240 d1jmva_ 1 ------------------------------------------------------------ 1 query 241 VVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYAD 300 d1jmva_ 1 ------------------------------------------------------------ 1 query 301 RLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQ------NV 354 ::::::::::::::::::::::::: :: d1jmva_ 1 -----------------------MYKHILVAVDLSEESPILLKKAVGI----AKRHDAKL 33 query 355 YGVSMPSKYSS-----------------------DHSKGDAAELAR--RTGL-NFRTVSI 388 :::::: :::::::::::: :::: ::::: d1jmva_ 34 SIIHVD-----VNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKLSG-- 86 query 389 EPMFDAYMASLGLTGLAEENLQSR--LRGTTLMAISNQEG-HIVLAPGNKSELAVGYSTL 445 :::::::::::::: :::::::: d1jmva_ 87 ------------------------SGDLGQVLSDAIEQYDVDLLVTGHH----------- 111 query 446 Y-------------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKP 492 :::::: d1jmva_ 112 -QDFWSKLMSSTRQVMNTIK---------------------------------------- 130 query 493 DYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGF 552 d1jmva_ 131 ------------------------------------------------------------ 131 query 553 GKDRRLPITNRWREGH---------- 568 d1jmva_ 131 ----------------IDMLVVPLRD 140 TMalign alignment (TM-score: 0.17 Raw score:95.23) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 d1jmva_ 1 ------------------------------------------------------------ 1 query 61 FVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRV 120 d1jmva_ 1 ------------------------------------------------------------ 1 query 121 ALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGA 180 d1jmva_ 1 ------------------------------------------------------------ 1 query 181 GLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGE 240 d1jmva_ 1 ------------------------------------------------------------ 1 query 241 VVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYAD 300 d1jmva_ 1 ------------------------------------------------------------ 1 query 301 RLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALG--AQNVYGVS 358 ::::::::::::::::::::::::::: :::::::: d1jmva_ 1 -----------------------MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIH 37 query 359 MPSK---------------------YSSDHSKGDAAELARRT--GLNFRTVSIEPMFDAY 395 :::: :: :::::::::::: ::::::::: d1jmva_ 38 VDVNFSDLYTGLIDVNMSSMQDRIS--TE-TQKALLDLAESVDYPISEKLSGS------- 87 query 396 MASLGLTGLAEENLQSRLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLYGDS-VG-- 451 : ::::::::::::::: ::::::: ::::::::: ::: :: d1jmva_ 88 --------------G--DLGQVLSDAIEQYDVDLLVTGHH-QDFWSKLMS--STRQVMNT 128 query 452 ----AYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDR 507 ::: :: : :: d1jmva_ 129 IKIDMLV-VP-L-RD--------------------------------------------- 140 query 508 DTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREG 567 d1jmva_ 141 ------------------------------------------------------------ 141 query 568 H 568 d1jmva_ 141 - 141 HHsearch alignment (Probability: 0.04 E-value:0.35) query 19 AGNAEAILRWTRHSAEQGAHLVAF------PEMALTGYPVEDLALRSSFVEASRTALREL 72 :::::::::::::::::::::::: :::::::::::::::::::::::::::::: d1jmva_ 13 EESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDL 72 query 73 AAR 75 ::: d1jmva_ 73 AES 75
Intermediate <-- 1.539 --> HitDALI alignment (Z-score: 6.4 Raw score:475.20) d1jmva_ 1 -MYKHILVAVD---LSEE------------------------------------------ 14 :::::::::: :::: d1te2a_ 1 rQILAAIFDMDgllIDSEplwdraeldvmaslgvdisrrnelpdtlglridmvvdlwyar 60 d1jmva_ 15 ----------------------------spilLKKAVGIAKRHDAKLSIIHVDvnfsdly 46 ::::::::::::::::::::: d1te2a_ 61 qpwngpsrqevverviaraislveetrpllpgVREAVALCKEQGLLVGLASAS------- 113 d1jmva_ 47 tglidvnmssmqdristeTQKALLDLAE--SVDYPISEKLSGS---GDLG--QVLSDAIE 99 :::::::::: ::::::::::::: :::: :::::::: d1te2a_ 114 ------------------PLHMLEKVLTmfDLRDSFDALASAEklpYSKPhpQVYLDCAA 155 d1jmva_ 100 QYDV----DLLVTGHhqdfwsklmsstrQVMNTIKIDMLVVPLRD--------------- 140 :::: ::::::: ::::::::::::::::: d1te2a_ 156 KLGVdpltCVALEDS---------vngmIASKAARMRSIVVPAPEaqndprfvlanvkls 206 d1jmva_ 141 ------------ 141 d1te2a_ 207 slteltakdllg 218 FAST alignment (Normalized score: 4.81 Raw score:840.30) d1jmva_ 1 -MYKHILVAVD------------------------------------------------- 10 :::::::: d1te2a_ 1 RQILAAIFD--MDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWY 58 d1jmva_ 11 ------------------------------LSEESPILLKKAVGIAKRHDAKLSIIHVDV 40 :::::::::::::: :::::::: d1te2a_ 59 ARQPWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVALCKE----QGLLVGLA---- 110 d1jmva_ 41 NFSDLYTGLIDVNMSSMQDRISTE---TQKALLDLAESVDY---PISEKLSGSGD----- 89 ::::::::::::: ::::::::: d1te2a_ 111 ------------------------SASPLHMLEKVLTMFD-LRDSFDALASAE--KLPYS 143 d1jmva_ 90 --LGQVLSDAIEQYDV----DLLVTGHHQDFWSK-LMSSTRQVMNTIKIDMLVVPLRD-- 140 :::::::::::::: ::::: ::::::::: :::::::::: d1te2a_ 144 KPHPQVYLDCAAKLGVDPLTCVALE---------DSVNGMIASK-AARMRSIVVP---AP 190 d1jmva_ 141 ---------------------------- 141 d1te2a_ 191 EAQNDPRFVLANVKLSSLTELTAKDLLG 218 TMalign alignment (TM-score: 0.56 Raw score:78.75) d1jmva_ 1 -MYKHILVAVDLS-EES------------------------------------------- 15 :::::::::::: ::: d1te2a_ 1 RQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRNELPDTLGLRIDMVVDLWYAR 60 d1jmva_ 16 ----------------------------PILLK-KAVGIAKRHDAKLSIIHVDVNFSDLY 46 ::::: ::::::::::::::::::: d1te2a_ 61 QPWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVALCKEQGLLVGLASAS------- 113 d1jmva_ 47 TGLIDVNMSSMQDRISTETQKALLDLAE-S-VDYPISEKLSGS---GDL-GQVLSDAIEQ 100 :::::::::: : :::::::::::: ::: :::::::::: d1te2a_ 114 ------------------PLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAA 155 d1jmva_ 101 -Y-D-V--DLLVTGHHQDFWSKLMSSTRQVMNTIKIDMLVVPLRD--------------- 140 : : : ::::::: : :::::::::::::::::::: d1te2a_ 156 KLGVDPLTCVALEDS-------V--NGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLS 206 d1jmva_ 141 ------------ 141 d1te2a_ 207 SLTELTAKDLLG 218 HHsearch alignment (Probability: 0.01 E-value:0.08) d1jmva_ 1 MYKHILVAVDLSE 13 ::::::::::::: d1te2a_ 2 QILAAIFDMDGLL 14