Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1jmva_ | Universal stress protein A, UspA | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1iira_ | UDP-glucosyltransferase GtfB | UDP-Glycosyltransferase/glycogen phosphorylase | UDP-Glycosyltransferase/glycogen phosphorylase | α/β |
Query <-- 0.827 --> IntermediateDALI alignment (Z-score: 7.9 Raw score:512.80) query 1 slqlrlalnqidstvgdiagnaeailrwtrhsaeqgahlvafpemaltgypvedlalrss 60 d1jmva_ 1 ------------------------------------------------------------ 1 query 61 fveasrtalrelaarlaeegfgelpvlvgyldrsesaqpkygqpagaprnaaavlhrgrv 120 d1jmva_ 1 ------------------------------------------------------------ 1 query 121 altfakhhlpnygvfdefryfvpgdtmpivrlhgvdialaicedlwqdggrvpaarsaga 180 d1jmva_ 1 ------------------------------------------------------------ 1 query 181 glllsvnaspyerdkddtrlelvrkraqeagcttaylamiggqdelvfdgdsivvdrdge 240 d1jmva_ 1 ------------------------------------------------------------ 1 query 241 vvarapqfsegcvvldldlpaaeaepptgvvddglridrlviseeplpayeaelaggyad 300 d1jmva_ 1 ------------------------------------------------------------ 1 query 301 rldadeevysalvvglrayvaknGFRSVLIGLSGGIDSALVAAIACDALG--aqNVYGVS 358 ::::::::::::::::::::::::::: :::::: d1jmva_ 1 -----------------------MYKHILVAVDLSEESPILLKKAVGIAKrhdaKLSIIH 37 query 359 MPS------------------kysSDHSKGDAAELARRTG---lNFRTVSIepmfdayma 397 ::: :::::::::::::::: ::::::: d1jmva_ 38 VDVnfsdlytglidvnmssmqdriSTETQKALLDLAESVDypisEKLSGSG--------- 88 query 398 slgltglaeenlqsrLRGTTLMAISNQEGH-IVLAPGNKseLAVGYS------tlygdsv 450 ::::::::::::::: :::::::: :::::: d1jmva_ 89 ---------------DLGQVLSDAIEQYDVdLLVTGHHQ--DFWSKLmsstrqvmntiki 131 query 451 gAYGPiKDVYktsifrlaewrnraaaergqtppipeasitkpdypvldailelyvdrdtg 510 :::: :::: d1jmva_ 132 dMLVV-PLRD-------------------------------------------------- 140 query 511 adaivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfgkdrrlpitnrwregh 568 d1jmva_ 141 ---------------------------------------------------------- 141 FAST alignment (Normalized score: 3.30 Raw score:930.50) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 d1jmva_ 1 ------------------------------------------------------------ 1 query 61 FVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRV 120 d1jmva_ 1 ------------------------------------------------------------ 1 query 121 ALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGA 180 d1jmva_ 1 ------------------------------------------------------------ 1 query 181 GLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGE 240 d1jmva_ 1 ------------------------------------------------------------ 1 query 241 VVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYAD 300 d1jmva_ 1 ------------------------------------------------------------ 1 query 301 RLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQ------NV 354 ::::::::::::::::::::::::: :: d1jmva_ 1 -----------------------MYKHILVAVDLSEESPILLKKAVGI----AKRHDAKL 33 query 355 YGVSMPSKYSS-----------------------DHSKGDAAELAR--RTGL-NFRTVSI 388 :::::: :::::::::::: :::: ::::: d1jmva_ 34 SIIHVD-----VNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVDYPISEKLSG-- 86 query 389 EPMFDAYMASLGLTGLAEENLQSR--LRGTTLMAISNQEG-HIVLAPGNKSELAVGYSTL 445 :::::::::::::: :::::::: d1jmva_ 87 ------------------------SGDLGQVLSDAIEQYDVDLLVTGHH----------- 111 query 446 Y-------------GDSVGAYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKP 492 :::::: d1jmva_ 112 -QDFWSKLMSSTRQVMNTIK---------------------------------------- 130 query 493 DYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGF 552 d1jmva_ 131 ------------------------------------------------------------ 131 query 553 GKDRRLPITNRWREGH---------- 568 d1jmva_ 131 ----------------IDMLVVPLRD 140 TMalign alignment (TM-score: 0.17 Raw score:95.23) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 d1jmva_ 1 ------------------------------------------------------------ 1 query 61 FVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRV 120 d1jmva_ 1 ------------------------------------------------------------ 1 query 121 ALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGA 180 d1jmva_ 1 ------------------------------------------------------------ 1 query 181 GLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGE 240 d1jmva_ 1 ------------------------------------------------------------ 1 query 241 VVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYAD 300 d1jmva_ 1 ------------------------------------------------------------ 1 query 301 RLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALG--AQNVYGVS 358 ::::::::::::::::::::::::::: :::::::: d1jmva_ 1 -----------------------MYKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIH 37 query 359 MPSK---------------------YSSDHSKGDAAELARRT--GLNFRTVSIEPMFDAY 395 :::: :: :::::::::::: ::::::::: d1jmva_ 38 VDVNFSDLYTGLIDVNMSSMQDRIS--TE-TQKALLDLAESVDYPISEKLSGS------- 87 query 396 MASLGLTGLAEENLQSRLRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLYGDS-VG-- 451 : ::::::::::::::: ::::::: ::::::::: ::: :: d1jmva_ 88 --------------G--DLGQVLSDAIEQYDVDLLVTGHH-QDFWSKLMS--STRQVMNT 128 query 452 ----AYGPIKDVYKTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDR 507 ::: :: : :: d1jmva_ 129 IKIDMLV-VP-L-RD--------------------------------------------- 140 query 508 DTGADAIVAAGYDRELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREG 567 d1jmva_ 141 ------------------------------------------------------------ 141 query 568 H 568 d1jmva_ 141 - 141 HHsearch alignment (Probability: 0.04 E-value:0.35) query 19 AGNAEAILRWTRHSAEQGAHLVAF------PEMALTGYPVEDLALRSSFVEASRTALREL 72 :::::::::::::::::::::::: :::::::::::::::::::::::::::::: d1jmva_ 13 EESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDL 72 query 73 AAR 75 ::: d1jmva_ 73 AES 75
Intermediate <-- 1.911 --> HitDALI alignment (Z-score: 5.9 Raw score:519.70) d1jmva_ 1 myKHILVAVDLSEE-SPILLKKAVGIAKRhDAKLSIIHvdvnfsdlytglidvnmssmqd 59 :::::::::::: :::::::::::::: :::::::: d1iira_ 1 --MRVLLATCGSRGdTEPLVALAVRVRDL-GADVRMCA---------------------- 35 d1jmva_ 60 ristetqkALLDLAESVDypisEKLSGS-------------------GDLGQVLSDAIEq 100 :::::::::: :::::: :::::::::::: d1iira_ 36 ------ppDCAERLAEVG---vPHVPVGprakpltaedvrrftteaiATQFDEIPAAAE- 85 d1jmva_ 101 yDVDLLVTGHhqdfwskLMSSTRQVMNTI---KIDMLVVPLR------------------ 139 ::::::::: :::::::::::: :::::::::: d1iira_ 86 -GCAAVVTTG-------LLAAAIGVRSVAeklGIPYFYAFHCpsyvpspyyppppidipa 137 d1jmva_ 140 ------------------------------------------------------------ 140 d1iira_ 138 qwernnqsayqryggllnshrdaiglppvediftfgytdhpwvaadpvlaplqptdldav 197 d1jmva_ 140 ------------------------------------------------------------ 140 d1iira_ 198 qtgawilpderplspelaafldagpppvylgfgapadavrvaidairahgrrvilsrgwa 257 d1jmva_ 140 ------------------------------------------------------------ 140 d1iira_ 258 dlvlpddgadcfaigevnhqvlfgrvaavihhggagtthvaaragapqillpqmadqpyy 317 d1jmva_ 140 ------------------------------------------------------------ 140 d1iira_ 318 agrvaelgvgvahdgpiptfdslsaalataltpetharatavagtirtdgaavaarllld 377 d1jmva_ 140 ----d 140 d1iira_ 378 avsre 382 FAST alignment (Normalized score: 4.38 Raw score:1013.00) d1jmva_ 1 MYKHILVAVDLSE-ESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQD 59 ::::::::::: :::::::::::::: :::::::: d1iira_ 1 --MRVLLATCGSRGDTEPLVALAVRVRD-LGADVRMC----------------------- 34 d1jmva_ 60 RISTETQ--KALLDLAESVDYPISEKLSGSG----------------------DLGQVLS 95 :::::::: :::: :::: ::::::: d1iira_ 35 -------APPDCAERLA--EVGV-PHVP---VGPRAKPLTAEDVRRFTTEAIATQFDEIP 81 d1jmva_ 96 DAIEQYDVDLLVTGHHQDFWSK--LMSSTRQVMN---TIKIDMLVVPLRD---------- 140 ::: :::::::: :::::::::: :::::::::: d1iira_ 82 AAA--EGCAAVVT---------TGLLAAAIGVRSVAEKLGIPYFYAF---HCPSYVPSPY 127 d1jmva_ 141 ------------------------------------------------------------ 141 d1iira_ 128 YPPPPIDIPAQWERNNQSAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTDHPWVAADPVLA 187 d1jmva_ 141 ------------------------------------------------------------ 141 d1iira_ 188 PLQPTDLDAVQTGAWILPDERPLSPELAAFLDAGPPPVYLGFGAPADAVRVAIDAIRAHG 247 d1jmva_ 141 ------------------------------------------------------------ 141 d1iira_ 248 RRVILSRGWADLVLPDDGADCFAIGEVNHQVLFGRVAAVIHHGGAGTTHVAARAGAPQIL 307 d1jmva_ 141 ------------------------------------------------------------ 141 d1iira_ 308 LPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSAALATALTPETHARATAVAGTIRTDG 367 d1jmva_ 141 --------------- 141 d1iira_ 368 AAVAARLLLDAVSRE 382 TMalign alignment (TM-score: 0.48 Raw score:67.33) d1jmva_ 1 MYKHILVAVDLSEE-SPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQD 59 :::::::::::: :::::::::::::: :::::::: d1iira_ 1 --MRVLLATCGSRGDTEPLVALAVRVRDL-GADVRMCA---------------------- 35 d1jmva_ 60 RISTETQKALLDLAESVDYPISEKLS----------------GSG--------------- 88 :::::::::: ::::::::: ::: d1iira_ 36 ------PPDCAERLAE-VGVPHVPVGPRAKPLTAEDVRRFTTEAIATQFDEIPAAAEGCA 88 d1jmva_ 89 --------DLGQVLSDAIEQYDVDLLVTGHHQDFWSKLMS-------------------- 120 :::::::::::::::::::::: : :: ::: d1iira_ 89 AVVTTGLLAAAIGVRSVAEKLGIPYFYAFH-C-PS--YVPSPYYPPPPIDIPAQWERNNQ 144 d1jmva_ 121 ------------------------STRQVMNTIKIDMLVVP------------------- 137 ::::::: : :::::: d1iira_ 145 SAYQRYGGLLNSHRDAIGLPPVEDIFTFGYT-D--HPWVAADPVLAPLQPTDLDAVQTGA 201 d1jmva_ 138 ------------------------------------------------------------ 138 d1iira_ 202 WILPDERPLSPELAAFLDAGPPPVYLGFGAPADAVRVAIDAIRAHGRRVILSRGWADLVL 261 d1jmva_ 138 ------------------------------LRD--------------------------- 140 ::: d1iira_ 262 PDDGADCFAIGEVNHQVLFGRVAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRV 321 d1jmva_ 141 ------------------------------------------------------------ 141 d1iira_ 322 AELGVGVAHDGPIPTFDSLSAALATALTPETHARATAVAGTIRTDGAAVAARLLLDAVSR 381 d1jmva_ 141 - 141 d1iira_ 382 E 382 HHsearch alignment (Probability: 0.17 E-value:0.16) d1jmva_ 4 HILVAVDLS-EESPILLKKAVGIAKRHDAKLSIIH 37 ::::::::: :::::::::::::::: :::::::: d1iira_ 2 RVLLATCGSRGDTEPLVALAVRVRDL-GADVRMCA 35