Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1tq8a_ | Hypothetical protein Rv1636 | Adenine nucleotide alpha hydrolases-like | Adenine nucleotide alpha hydrolase-like | α/β |
| Hit | d1e19a_ | Carbamate kinase | Carbamate kinase-like | Carbamate kinase-like | α/β |
Query <-- 0.952 --> IntermediateDALI alignment (Z-score: 8.5 Raw score:517.50) query 1 slqlrlalnqidstvgdiagnaeailrwtrhsaeqgahlvafpemaltgypvedlalrss 60 d1tq8a_ 1 ------------------------------------------------------------ 1 query 61 fveasrtalrelaarlaeegfgelpvlvgyldrsesaqpkygqpagaprnaaavlhrgrv 120 d1tq8a_ 1 ------------------------------------------------------------ 1 query 121 altfakhhlpnygvfdefryfvpgdtmpivrlhgvdialaicedlwqdggrvpaarsaga 180 d1tq8a_ 1 ------------------------------------------------------------ 1 query 181 glllsvnaspyerdkddtrlelvrkraqeagcttaylamiggqdelvfdgdsivvdrdge 240 d1tq8a_ 1 ------------------------------------------------------------ 1 query 241 vvarapqfsegcvvldldlpaaeaepptgvvddglridrlviseeplpayeaelaggyad 300 d1tq8a_ 1 ------------------------------------------------------------ 1 query 301 rldadeevysalvvglrayvaKNGFRSVLIGLSGGIDSALVAAIACDALG-aQNVYGVSM 359 ::::::::::::::::::::::::::::: :::::::: d1tq8a_ 1 --------------------sLSAYKTVVVGTDGSDSSMRAVDRAAQIAGadAKLIIASA 40 query 360 PSKysSDHSKGDAAELARRTG------LNFRTVSIepmfdaymaslgltglaeenlqsrL 413 ::: :::::::::::::::: :::::::: : d1tq8a_ 41 YLP--TAPIYEILHDAKERAHnagaknVEERPIVG------------------------A 74 query 414 RGTTLMAISNQEGH-IVLAPGNksELAVgystlygdsvgaygpikdvyktsifrlaewrn 472 :::::::::::::: ::::::: :::: d1tq8a_ 75 PVDALVNLADEEKAdLLVVGNV--GLST-------------------------------- 100 query 473 raaaergqtppipeasitkpdypvldailelyvdrdtgadaivaagydrelvvktlrmVD 532 :: d1tq8a_ 101 ----------------------------------------------------------IA 102 query 533 TAEYKRRQYppGTKIsakgfgkdrrlpitnrwregh 568 ::::::::: :::: d1tq8a_ 103 GRLLGSVPAnvSRRA-----------kvdvlivhtt 127 FAST alignment (Normalized score: 1.46 Raw score:391.50) query 1 SLQL-RLALNQIDSTVGD--IAGNAEAILRWTRHSAEQGA----HLVAFPEMALTGYPVE 53 :::: ::::::: :::::::::::::: ::::: d1tq8a_ 1 SLSAYKTVVVGT------DGSDSSMRAVDRAAQI------AGADAKLII----------- 37 query 54 DLALRSSFV-------EASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAG 106 ::::::::::::::::::: ::::: d1tq8a_ 38 ---------ASAYLPTAPIYEILHDAKERAHNAGA--KNVEE------------------ 68 query 107 APRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLW 166 d1tq8a_ 69 ------------------------------------------------------------ 69 query 167 QDGGRVPAARSAGAGLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDEL 226 d1tq8a_ 69 ------------------------------------------------------------ 69 query 227 VFDGDSIVVDRDGEVVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEP 286 d1tq8a_ 69 ------------------------------------------------------------ 69 query 287 LPAYEAELAGGYADRLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIAC 346 d1tq8a_ 69 ------------------------------------------------------------ 69 query 347 DALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLGLTGLAE 406 d1tq8a_ 69 ------------------------------------------------------------ 69 query 407 ENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFR 466 d1tq8a_ 69 ------------------------------------------------------------ 69 query 467 LAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVK 526 d1tq8a_ 69 ------------------------------------------------------------ 69 query 527 TLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH------------------ 568 d1tq8a_ 69 ------------------------------------------RPIVGAPVDALVNLADEE 86 query 569 ----------------------------------------- 569 d1tq8a_ 87 KADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVHTT 127 TMalign alignment (TM-score: 0.17 Raw score:96.95) query 1 SLQLRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVEDLALRSS 60 : d1tq8a_ 1 -------------------S---------------------------------------- 1 query 61 FVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGRV 120 d1tq8a_ 2 ------------------------------------------------------------ 2 query 121 ALTFAKHHLPNYGVFDEFRYFVPGDTMPIVRLHGVDIALAICEDLWQDGGRVPAARSAGA 180 d1tq8a_ 2 ------------------------------------------------------------ 2 query 181 GLLLSVNASPYERDKDDTRLELVRKRAQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGE 240 d1tq8a_ 2 ------------------------------------------------------------ 2 query 241 VVARAPQFSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYAD 300 d1tq8a_ 2 ------------------------------------------------------------ 2 query 301 RLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGA-QNVYGVSM 359 :::::::::::::::::::::::::::::: :::::::: d1tq8a_ 2 ---------------------LSAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASA 40 query 360 PSK-YSSDHSKGDAAELARRTG------LNFRTVSIEPMFDAYMASLGLTGLAEENLQSR 412 ::: :: ::::::::::::: :::::: : : d1tq8a_ 41 YLPT--AP-IYEILHDAKERAHNAGAKNVEERPI-V--G--------------------- 73 query 413 LRGTTLMAISNQEGH-IVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVYKTSIFRLAEWR 471 ::::::::::::::: ::::::: : : d1tq8a_ 74 APVDALVNLADEEKADLLVVGNV--G----L----------------------------- 98 query 472 NRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYDRELVVKTLRMV 531 : ::: d1tq8a_ 99 -------------------------------------------------------S-TIA 102 query 532 DTAEYKRRQYPPGTKISAKG-FG------KDRRLPITNRWREGH 568 ::::::: ::::::::: : : d1tq8a_ 103 -GRLLGSV-PANVSRRAK-VD-VLIVHTT--------------- 127 HHsearch alignment (Probability: 0.08 E-value:0.10) query 323 NGFRSVLIGLSGGIDSALVAAIACDAL--GAQNVYGVSMPSKYSSDHSKGDAAELARRTG 380 ::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::: d1tq8a_ 3 SAYKTVVVGTDGSDSSMRAVDRAAQIAGADAKLIIASAYLPTAPIYEILHDAKERAHNAG 62 query 381 LNFRTVSI 388 :::::::: d1tq8a_ 63 AKNVEERP 70
Intermediate <-- 1.196 --> HitDALI alignment (Z-score: 4.2 Raw score:450.40) d1tq8a_ 1 slsaYKTVVVGT--DGSD-------------ssmRAVDRAAQIAGADAKLIIASAYLP-- 43 :::::::: :::: :::::::::::::::::::::::: d1e19a_ 1 ----GKRVVIALggNALQqrgqkgsyeemmdnvrKTARQIAEIIARGYEVVITHGNGPqv 56 d1tq8a_ 44 -------------------------TAPIYEILHDAKERAHNAG---------------- 62 ::::::::::::::::::: d1e19a_ 57 gslllhmdagqatygipaqpmdvagAMSQGWIGYMIQQALKNELrkrgmekkvvtiitqt 116 d1tq8a_ 63 ------------------------------------------------------------ 63 d1e19a_ 117 ivdkndpafqnptkpvgpfydeetakrlarekgwivkedsgrgwrrvvpspdpkghveae 176 d1tq8a_ 63 -------akNVEER-PIVG-----------------APVDALVNLADEEKADLLVVGNVG 97 ::::: :::: :::::::::::::::::::::::: d1e19a_ 177 tikklvergVIVIAsGGGGvpviledgeikgveaviDKDLAGEKLAEEVNADIFMILTDV 236 d1tq8a_ 98 ----------------------lstiagrLLGS--------------------------- 108 :::: d1e19a_ 237 ngaalyygtekeqwlrevkveelrkyyeeGHFKagsmgpkvlaairfiewggeraiiahl 296 d1tq8a_ 109 vpanvsrraKVDVLIVHtt 127 :::::::: d1e19a_ 297 ekavealegKTGTQVLP-- 313 FAST alignment (Normalized score: 4.24 Raw score:844.90) d1tq8a_ 1 SLSAYKTVVVGTDG------------------SDSSMRAVDRAAQIAGADAKLIIASAYL 42 ::::::: :::::::::::::::::::::::::::: d1e19a_ 1 ----GKRVVIA---LGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNG 53 d1tq8a_ 43 PT-----------------------------APIYEILHDAKERAHNAGAK--------- 64 :::::::::::::::: d1e19a_ 54 --PQVGSLLLHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKN----ELRKRGMEK 107 d1tq8a_ 65 ------------------------------------------------------------ 65 d1e19a_ 108 KVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSP 167 d1tq8a_ 65 ------------------NVEERPIV----------------------GAPVDALVNLAD 84 :::: :::::::::::: d1e19a_ 168 DPKGHVEAETIKKLVERGVIVI----ASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAE 223 d1tq8a_ 85 EEKADLLVVGNVG---------LSTIAGRLLGSVPANVSRRAKVD--------------- 120 :::::::::: :::: d1e19a_ 224 EVNADIFMIL---TDVNGAALYYGTE-------------------KEQWLREVKVEELRK 261 d1tq8a_ 121 ---------------------------------------------VLIVHTT- 127 :::::: d1e19a_ 262 YYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEGKTGTQVL-P 313 TMalign alignment (TM-score: 0.61 Raw score:77.00) d1tq8a_ 1 SLSAYKTVVVGT-D--GS-------------DSSMRAVDRAAQIAGADAKLIIASAYL-- 42 :: :::::: : :: : ::::::::::::::::::::::::: d1e19a_ 1 ---GK-RVVIALGGNALQQRGQKGSYEEMMDN-VRKTARQIAEIIARGYEVVITHGNGPQ 55 d1tq8a_ 43 P-------------------------TAPIYEILHDAKERAHNAG----A-K-------- 64 : ::::::::::::::::::: : : d1e19a_ 56 VGSLLLHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQ 115 d1tq8a_ 65 ------------------------------------------------------------ 65 d1e19a_ 116 TIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEA 175 d1tq8a_ 65 ----------NVEER-P-IV----------------GAPVDALVNLADEEKADLLVVGNV 96 ::::: : :: :::::::::::::::::::::::: d1e19a_ 176 ETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTD 235 d1tq8a_ 97 G------LSTIAGRLL--GSVPA------------------------------------- 111 : ::: ::::: d1e19a_ 236 VNGAALY------YGTEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGE 289 d1tq8a_ 112 ----NVSR-RAKV--DV--L----IVHTT 127 :: :: :: : :::: d1e19a_ 290 RAII--AHL--EKAVEALEGKTGTQVLP- 313 HHsearch alignment (Probability: 0.03 E-value:0.17) d1tq8a_ 6 KTVVVGTDGSD 16 ::::::::::: d1e19a_ 2 KRVVIALGGNA 12