Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ii7a_ | Mre11 | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
| Hit | d1s95a_ | Serine/threonine protein phosphatase 5, PP5 | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
Query <-- 1.211 --> IntermediateDALI alignment (Z-score: 7.2 Raw score:832.10) query 1 slqLRLALNQIDS-TVGD------IAGNAEAILRWTRHSAEQGAHLVAFPEMALTgypve 53 :::::::::: :::: ::::::::::::::::::::::::::::::: d1ii7a_ 1 ---MKFAHLADIHlGYEQfhkpqrEEEFAEAFKNALEIAVQENVDFILIAGDLFH----- 52 query 54 dlalrssFVEASRTALRELAARLAeegFGELPVLV---gyLDRSesaqpkygqpaGAPRN 110 ::::::::::::::::: :::::::: :::: ::::: d1ii7a_ 53 ----ssrPSPGTLKKAIALLQIPK---EHSIPVFAiegnhDRTQ-----------RGPSV 94 query 111 AaavlhrgRVALTfakhhlpnygvfdefryfvpgDTMPIVRLHGVDIALAICE----dlw 166 : ::::: ::::::::::::::::::: d1ii7a_ 95 L-nlledfGLVYVigmrkekveneyltserlgngEYLVKGVYKDLEIHGMKYMssawfea 153 query 167 QDGGRVPAARsagaGLLLSV---naspyERDKDDTrleLVRKRAqEAGCT-TAYLAMIgg 222 :::::::::: :::::: ::::::: :::::: ::::: ::::::: d1ii7a_ 154 NKEILKRLFRptdnAILMLHqgvrevseARGEDYF--eIGLGDL-PEGYLyYALGHIH-- 208 query 223 qdelvfDGDSivvdrDGEVVARA--------------------------pqFSEGCVVLD 256 :::: :::::::: ::::::::: d1ii7a_ 209 ------KRYE---tsYSGSPVVYpgslerwdfgdyevryewdgikfkerygVNKGFYIVE 259 query 257 LdlpaaeaepptgvvddglridrlviseeplpayeaeLAGGyadrldadeevysalvvgl 316 : :::: d1ii7a_ 260 D------------------------------------FKPR------------------- 264 query 317 rayvakngfrsvliglsggidsalvaaiacdalgaqnvygvsmpskyssdhskgdaaela 376 d1ii7a_ 265 ------------------------------------------------------------ 265 query 377 rrtglnfrtvsiepmfdaymaslgltglaeenlqsrlrgttlmaisnqeghivlapgnks 436 d1ii7a_ 265 ------------------------------------------------------------ 265 query 437 elavgystlygdsvgaygpikdvyktsifrlaewrnraaaergqtppipeasitkpdypv 496 d1ii7a_ 265 ------------------------------------------------------------ 265 query 497 ldailelyvdrdtgadaivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfgkdr 556 d1ii7a_ 265 ---fveikvrpfidvkikgseeeirkaikrliplipknayvrlnigwrkpfdlteikell 321 query 557 rlpitnrwregh 568 d1ii7a_ 322 nveylkidtwri 333 FAST alignment (Normalized score: 2.90 Raw score:1260.00) query 1 SLQLRLALNQIDSTVG--------------DIAGNAEAILRWTRHSAEQGAHLVAFPEMA 46 :::::: :::::::::::::::::::::::::::::: d1ii7a_ 1 ---MKFAHL-------ADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDL 50 query 47 LTGYPVEDLALRSSF------VEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPK 100 ::::::::::::::::: ::::::: d1ii7a_ 51 ---------------FHSSRPSPGTLKKAIALLQIPKE---HSIPVFA------------ 80 query 101 YGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPG---------------- 144 d1ii7a_ 81 --------------------------------------------IEGNHDRTQRGPSVLN 96 query 145 -------------------------------DTMPIVRLHGVDIALAICEDLW------- 166 ::::::::::::::::: d1ii7a_ 97 LLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMK-----YMSSAWF 151 query 167 --QDGGRVPAARSAGA------GLLLSVNASPYERDKDDT--------------RLELVR 204 :::::::: ::::::::: :::: d1ii7a_ 152 EANKEILKRL------FRPTDNAILMLHQGV---------REVSEARGEDYFEIGLGD-- 194 query 205 KRAQEA----GCTTAYLAMIGGQDELVFD---GDSIVVDRDGEVVARAPQ---------- 247 :::::: :::::: d1ii7a_ 195 ------LPEGYLYYAL-------------GHIHKRYET------------SYSGSPVVYP 223 query 248 ---------------------------FSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRL 280 :::::::: d1ii7a_ 224 GSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIV------------------------- 258 query 281 VISEEPLPAYEAELAGGYADRLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSAL 340 d1ii7a_ 259 ------------------------------------------------------------ 259 query 341 VAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLG 400 d1ii7a_ 259 ------------------------------------------------------------ 259 query 401 LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVY 460 d1ii7a_ 259 ------------------------------------------------------------ 259 query 461 KTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYD 520 d1ii7a_ 259 ------------------------------------------------------------ 259 query 521 RELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH------------ 568 d1ii7a_ 259 ------------------------------------------------EDFKPRFVEIKV 270 query 569 ------------------------------------------------------------ 569 d1ii7a_ 271 RPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGWRKPFDLTEIKELLNVEYLKIDT 330 query 569 --- 569 d1ii7a_ 331 WRI 333 TMalign alignment (TM-score: 0.35 Raw score:198.57) query 1 SLQLRLALNQIDSTVGD-------IAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVE 53 :::::::::::::: ::::::::::::::::::::::::::::: :: : d1ii7a_ 1 ---MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDL-FH--S- 53 query 54 DLALRSSFVEASRTALRELAARLAEEGFGELPVLVGY---LDRSESAQPKYGQPAGAPRN 110 : : ::::::::::::::::: :: :::::::: ::: : :::: d1ii7a_ 54 --S-R--PSPGTLKKAIALLQIPK--EH-SIPVFAIEGNHDRT---------Q---RGPS 93 query 111 AAAVLHRGRVALTFAKH----------------HLPNYGVFDEFRYFVPGDTMPIVRLHG 154 ::::::::::::::::: ::::::::::: d1ii7a_ 94 VLNLLEDFGLVYVIGMRKEKVENEYLTSERLGN----------------GEYLVKGVYKD 137 query 155 VDIALAICEDL--W--QDGGRVPAARSAGAGLLLSVNASP--YERDKDDT-R-LELVRKR 206 ::::::::::: : ::::::::::: :::::::::::: :::::::: : :::::: d1ii7a_ 138 LEIHGMKYMSSAWFEANKEILKRLFRP-TDNAILMLHQGVREVSEARGEDYFE-IGLGDL 195 query 207 AQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQ------------------- 247 :: :::::::::: :::::::: ::::::::: d1ii7a_ 196 PE--GYLYYALGHI-------HKRYETSY---SGSPVVYPGSLERWDFGDYEVRYEWDGI 243 query 248 -------FSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYA- 299 ::::::::::: ::::: d1ii7a_ 244 KFKERYGVNKGFYIVEDF------------------------------------KPRFVE 267 query 300 --DRLDADEEVYSALVV-GLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYG 356 : ::: : :::: d1ii7a_ 268 IK--------------VR-PFI---------D-----------VKIK------------- 279 query 357 VSMPSKYSSDHSKGDAAELARRTGLN--------------FRTVSIEPMFDAYMASLGLT 402 :::::::::::::::: d1ii7a_ 280 ----------GSEEEIRKAIKRLIPLIPKNAYVRLNIGWR-------------------- 309 query 403 GLAEENLQSRLRGTTLMAISNQ-E-GHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVY 460 :: : :::::::: : :::::::: :: d1ii7a_ 310 -------KP--F--DLTEIKELLNVEYLKIDTW----------RI--------------- 333 query 461 KTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYD 520 d1ii7a_ 334 ------------------------------------------------------------ 334 query 521 RELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 568 d1ii7a_ 334 ------------------------------------------------ 334 HHsearch alignment (Probability: 0.04 E-value:0.06) query 19 AGNAEAILRWTRHSAEQGAHLVAF 42 :::::::::::::::::::::::: d1ii7a_ 23 EEFAEAFKNALEIAVQENVDFILI 46
Intermediate <-- 1.677 --> HitDALI alignment (Z-score: 8.5 Raw score:989.70) d1ii7a_ 1 -----------------------------------------------------------M 1 : d1s95a_ 1 ysgpkledgkvtisfmkelmqwykdqkklhrkcayqilvqvkevlsklstlvettlketE 60 d1ii7a_ 2 KFAHLADIHLgyeqfhkpqreeeFAEAFKNALEIAVQ-envDFILIAGDLFHssrpspgT 60 :::::::::: :::::::::::::: ::::::::::: : d1s95a_ 61 KITVCGDTHG-------------QFYDLLNIFELNGLpsetNPYIFNGDFVD----rgsF 103 d1ii7a_ 61 LKKAIALL-QIPKEHSIPVFAIEGNHDRTQ--------------------RGPS-VLNLl 98 :::::::: ::::::::::::::::::::: :::: :::: d1s95a_ 104 SVEVILTLfGFKLLYPDHFHLLRGNHETDNmnqiygfegevkakytaqmyELFSeVFEW- 162 d1ii7a_ 99 edfglvYVIGmrkekveneyltserlgngeylvkgvykdleihgmkymssawfeankeil 158 :::: d1s95a_ 163 ------LPLA-------------------------------------------------- 166 d1ii7a_ 159 krlfrptdNAILMLHQ----------------------------------GVREvsearG 184 :::::::: :::: : d1s95a_ 167 ----qcinGKVLIMHGglfsedgvtlddirkiernrqppdsgpmcdllwsDPQPqngrsI 222 d1ii7a_ 185 EDY---FEIGLGD-LPEG----YLYYALGHIHK---RYETSYsgSPVVYPGSLERW--DF 231 ::: ::::::: :::: ::::::::::: :::::: :::::::::::: :: d1s95a_ 223 SKRgvsCQFGPDVtKAFLeennLDYIIRSHEVKaegYEVAHG--GRCVTVFSAPNYcdQM 280 d1ii7a_ 232 GDyevryewdgikfkerygvNKGFYIVE--DFKPRFVEIKVRpfidvkikgseeeirkai 289 :: :::::::: :::::::::::: d1s95a_ 281 GN------------------KASYIHLQgsDLRPQFHQFTAV------------------ 304 d1ii7a_ 290 krliplipknayvrlnigwrkpfdlteikellnvEYLKidtwri 333 :::: d1s95a_ 305 ------------------phpnvkpmayantllqLGMM------ 324 FAST alignment (Normalized score: 4.80 Raw score:1576.00) d1ii7a_ 1 -----------------------------------------------------------M 1 : d1s95a_ 1 YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETE 60 d1ii7a_ 2 KFAHLADIHLGYEQFHKPQREEE--FAEAFKNALEIAVQENV-------DFILIAGDLFH 52 :::::::: ::::::::::: ::::::::: d1s95a_ 61 KITVCGDT---------------HGQFYDLLNIFEL------NGLPSETNPYIFNGDF-- 97 d1ii7a_ 53 SSRP------SPGTLKKAIALLQIPKEHSI---PVFAIEGNHDRTQRGPSVLNLLEDFGL 103 :::::::::::::: ::::::::::: d1s95a_ 98 ----VDRGSFSVEVILTLFGFKLL------YPDHFHLLRGNHET---------------- 131 d1ii7a_ 104 VYVIGMRKEKVENEYLTSERLGNGEYL--------------------------------- 130 d1s95a_ 132 ---------------------------DNMNQIYGFEGEVKAKYTAQMYELFSEVFEWLP 164 d1ii7a_ 131 VKGVYKDLEIHGMKYMSSAWFEANKEILKRLFRPTDNAILML------------------ 172 :::::: :::::: d1s95a_ 165 LAQCIN------------------------------GKVLIMHGGLFSEDGVTLDDIRKI 194 d1ii7a_ 173 ----------------HQGVREVSEAR---------GEDYF-EIGLGDLP------EGYL 200 :::: ::::: ::::::: :::: d1s95a_ 195 ERNRQPPDSGPMCDLLWSDP-------QPQNGRSISKRGVSCQFGPDVT-KAFLEENNLD 246 d1ii7a_ 201 YYALGHIH----KRYETSYSGS----PVVYPGS--LERWDFGDYEVRYEWDGIKFKERY- 249 ::::::: :::: ::::: ::::::: d1s95a_ 247 YIIRSHE-VKAEGYEV------AHGGRCVTV--FSAPNYCDQ-----------------M 280 d1ii7a_ 250 GVNKGFYIVE---DFKPRFVEIKVRPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNI 306 ::::::::: :::::::::: d1s95a_ 281 GNKASYIHL-QGSDLRPQFHQFT------------------------------------- 302 d1ii7a_ 307 GWRKPFDLTEIKELLNVEYLKIDTWRI---------------------- 333 d1s95a_ 303 ---------------------------AVPHPNVKPMAYANTLLQLGMM 324 TMalign alignment (TM-score: 0.44 Raw score:147.98) d1ii7a_ 1 -------------------------------------------------------M---- 1 : d1s95a_ 1 YSGPKLEDGKVTISFMKELMQWYKDQKKLHRKCAYQILVQVKEVLSKLSTLVETTLKETE 60 d1ii7a_ 2 KFAHLADIHLGYEQFHKPQREEEFAEAFKNALE-IAVQENVDFILIAGDLFHSSRPSPGT 60 :::::::::: :::::::::: ::::::::::::::::::: :: :: d1s95a_ 61 KITVCGDTHG-------------QFYDLLNIFELNGLPSETNPYIFNGDFVDR--GS-FS 104 d1ii7a_ 61 LKKAIALLQIPKEHSIPVFAIEGNHDRTQR------------------GPSVLNLLEDFG 102 :::::::::::::::::::::::::::::: :::::::::: d1s95a_ 105 VEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFEGEVKAKYTAQMYELFSEVFEW-- 162 d1ii7a_ 103 LVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLF 162 ::: :::: :::::::::: : : ::: :::: d1s95a_ 163 ---LPL-----------------------AQCI-NGKVLIMHGG-L--F--SED--GVTL 188 d1ii7a_ 163 RP-----------------TDNAILMLH-QGVREV-----SEARGEDY---FEIGLGDL- 195 :: ::: :::::: ::: :::::::: d1s95a_ 189 DDIRKIERNRQPPDSGPMC------DLLWSDPQPQNGRSI-----SKRGVSCQFGPDVTK 237 d1ii7a_ 196 -PE---GYLYYALGHIHK--RYETSYSGSPVVYPGSLERWDFGDYEVRYEWDGIKFKERY 249 :: :::::::::::: ::::::: ::::::::::::::::: d1s95a_ 238 AFLEENNLDYIIRSHEVKAEGYEVAHG-GRCVTVFSAPNYCDQMG--------------- 281 d1ii7a_ 250 GVNKGFYIVE--DFKPRFVEIKVRP--FIDVKIKGSEEEIRKAIKRLIPLIPKN-AY--- 301 ::::::::: ::::::::::::: : : d1s95a_ 282 -NKASYIHLQGSDLRPQFHQFTAVPHP--------------------------NV-KPMA 313 d1ii7a_ 302 ---------VRLNIGWRKPFDLTEIKELLNVEYLKIDTWRI 333 :: d1s95a_ 314 YANTLLQLG-------------------------MM----- 324 HHsearch alignment (Probability: 0.97 E-value:0.00) d1ii7a_ 2 KFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENV-DFILIAGDLFHSSRPSPGT 60 ::::::::::: :::::::::::::::: ::::::::::::::::::: d1s95a_ 61 KITVCGDTHGQ-------------FYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEV 107 d1ii7a_ 61 LKKAIALLQIPKEHSIPVFAIEGNHDRTQRG 91 :::::::: :::::::::::::::::::: d1s95a_ 108 ILTLFGFK---LLYPDHFHLLRGNHETDNMN 135