Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ii7a_ | Mre11 | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
| Hit | d1auia_ | Protein phosphatase-2B (PP-2B, calcineurin A subunit) | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
Query <-- 1.211 --> IntermediateDALI alignment (Z-score: 7.2 Raw score:832.10) query 1 slqLRLALNQIDS-TVGD------IAGNAEAILRWTRHSAEQGAHLVAFPEMALTgypve 53 :::::::::: :::: ::::::::::::::::::::::::::::::: d1ii7a_ 1 ---MKFAHLADIHlGYEQfhkpqrEEEFAEAFKNALEIAVQENVDFILIAGDLFH----- 52 query 54 dlalrssFVEASRTALRELAARLAeegFGELPVLV---gyLDRSesaqpkygqpaGAPRN 110 ::::::::::::::::: :::::::: :::: ::::: d1ii7a_ 53 ----ssrPSPGTLKKAIALLQIPK---EHSIPVFAiegnhDRTQ-----------RGPSV 94 query 111 AaavlhrgRVALTfakhhlpnygvfdefryfvpgDTMPIVRLHGVDIALAICE----dlw 166 : ::::: ::::::::::::::::::: d1ii7a_ 95 L-nlledfGLVYVigmrkekveneyltserlgngEYLVKGVYKDLEIHGMKYMssawfea 153 query 167 QDGGRVPAARsagaGLLLSV---naspyERDKDDTrleLVRKRAqEAGCT-TAYLAMIgg 222 :::::::::: :::::: ::::::: :::::: ::::: ::::::: d1ii7a_ 154 NKEILKRLFRptdnAILMLHqgvrevseARGEDYF--eIGLGDL-PEGYLyYALGHIH-- 208 query 223 qdelvfDGDSivvdrDGEVVARA--------------------------pqFSEGCVVLD 256 :::: :::::::: ::::::::: d1ii7a_ 209 ------KRYE---tsYSGSPVVYpgslerwdfgdyevryewdgikfkerygVNKGFYIVE 259 query 257 LdlpaaeaepptgvvddglridrlviseeplpayeaeLAGGyadrldadeevysalvvgl 316 : :::: d1ii7a_ 260 D------------------------------------FKPR------------------- 264 query 317 rayvakngfrsvliglsggidsalvaaiacdalgaqnvygvsmpskyssdhskgdaaela 376 d1ii7a_ 265 ------------------------------------------------------------ 265 query 377 rrtglnfrtvsiepmfdaymaslgltglaeenlqsrlrgttlmaisnqeghivlapgnks 436 d1ii7a_ 265 ------------------------------------------------------------ 265 query 437 elavgystlygdsvgaygpikdvyktsifrlaewrnraaaergqtppipeasitkpdypv 496 d1ii7a_ 265 ------------------------------------------------------------ 265 query 497 ldailelyvdrdtgadaivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfgkdr 556 d1ii7a_ 265 ---fveikvrpfidvkikgseeeirkaikrliplipknayvrlnigwrkpfdlteikell 321 query 557 rlpitnrwregh 568 d1ii7a_ 322 nveylkidtwri 333 FAST alignment (Normalized score: 2.90 Raw score:1260.00) query 1 SLQLRLALNQIDSTVG--------------DIAGNAEAILRWTRHSAEQGAHLVAFPEMA 46 :::::: :::::::::::::::::::::::::::::: d1ii7a_ 1 ---MKFAHL-------ADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDL 50 query 47 LTGYPVEDLALRSSF------VEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPK 100 ::::::::::::::::: ::::::: d1ii7a_ 51 ---------------FHSSRPSPGTLKKAIALLQIPKE---HSIPVFA------------ 80 query 101 YGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPG---------------- 144 d1ii7a_ 81 --------------------------------------------IEGNHDRTQRGPSVLN 96 query 145 -------------------------------DTMPIVRLHGVDIALAICEDLW------- 166 ::::::::::::::::: d1ii7a_ 97 LLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMK-----YMSSAWF 151 query 167 --QDGGRVPAARSAGA------GLLLSVNASPYERDKDDT--------------RLELVR 204 :::::::: ::::::::: :::: d1ii7a_ 152 EANKEILKRL------FRPTDNAILMLHQGV---------REVSEARGEDYFEIGLGD-- 194 query 205 KRAQEA----GCTTAYLAMIGGQDELVFD---GDSIVVDRDGEVVARAPQ---------- 247 :::::: :::::: d1ii7a_ 195 ------LPEGYLYYAL-------------GHIHKRYET------------SYSGSPVVYP 223 query 248 ---------------------------FSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRL 280 :::::::: d1ii7a_ 224 GSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIV------------------------- 258 query 281 VISEEPLPAYEAELAGGYADRLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSAL 340 d1ii7a_ 259 ------------------------------------------------------------ 259 query 341 VAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLG 400 d1ii7a_ 259 ------------------------------------------------------------ 259 query 401 LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVY 460 d1ii7a_ 259 ------------------------------------------------------------ 259 query 461 KTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYD 520 d1ii7a_ 259 ------------------------------------------------------------ 259 query 521 RELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH------------ 568 d1ii7a_ 259 ------------------------------------------------EDFKPRFVEIKV 270 query 569 ------------------------------------------------------------ 569 d1ii7a_ 271 RPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGWRKPFDLTEIKELLNVEYLKIDT 330 query 569 --- 569 d1ii7a_ 331 WRI 333 TMalign alignment (TM-score: 0.35 Raw score:198.57) query 1 SLQLRLALNQIDSTVGD-------IAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVE 53 :::::::::::::: ::::::::::::::::::::::::::::: :: : d1ii7a_ 1 ---MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDL-FH--S- 53 query 54 DLALRSSFVEASRTALRELAARLAEEGFGELPVLVGY---LDRSESAQPKYGQPAGAPRN 110 : : ::::::::::::::::: :: :::::::: ::: : :::: d1ii7a_ 54 --S-R--PSPGTLKKAIALLQIPK--EH-SIPVFAIEGNHDRT---------Q---RGPS 93 query 111 AAAVLHRGRVALTFAKH----------------HLPNYGVFDEFRYFVPGDTMPIVRLHG 154 ::::::::::::::::: ::::::::::: d1ii7a_ 94 VLNLLEDFGLVYVIGMRKEKVENEYLTSERLGN----------------GEYLVKGVYKD 137 query 155 VDIALAICEDL--W--QDGGRVPAARSAGAGLLLSVNASP--YERDKDDT-R-LELVRKR 206 ::::::::::: : ::::::::::: :::::::::::: :::::::: : :::::: d1ii7a_ 138 LEIHGMKYMSSAWFEANKEILKRLFRP-TDNAILMLHQGVREVSEARGEDYFE-IGLGDL 195 query 207 AQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQ------------------- 247 :: :::::::::: :::::::: ::::::::: d1ii7a_ 196 PE--GYLYYALGHI-------HKRYETSY---SGSPVVYPGSLERWDFGDYEVRYEWDGI 243 query 248 -------FSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYA- 299 ::::::::::: ::::: d1ii7a_ 244 KFKERYGVNKGFYIVEDF------------------------------------KPRFVE 267 query 300 --DRLDADEEVYSALVV-GLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYG 356 : ::: : :::: d1ii7a_ 268 IK--------------VR-PFI---------D-----------VKIK------------- 279 query 357 VSMPSKYSSDHSKGDAAELARRTGLN--------------FRTVSIEPMFDAYMASLGLT 402 :::::::::::::::: d1ii7a_ 280 ----------GSEEEIRKAIKRLIPLIPKNAYVRLNIGWR-------------------- 309 query 403 GLAEENLQSRLRGTTLMAISNQ-E-GHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVY 460 :: : :::::::: : :::::::: :: d1ii7a_ 310 -------KP--F--DLTEIKELLNVEYLKIDTW----------RI--------------- 333 query 461 KTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYD 520 d1ii7a_ 334 ------------------------------------------------------------ 334 query 521 RELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 568 d1ii7a_ 334 ------------------------------------------------ 334 HHsearch alignment (Probability: 0.04 E-value:0.06) query 19 AGNAEAILRWTRHSAEQGAHLVAF 42 :::::::::::::::::::::::: d1ii7a_ 23 EEFAEAFKNALEIAVQENVDFILI 46
Intermediate <-- 1.794 --> HitDALI alignment (Z-score: 8.6 Raw score:981.20) d1ii7a_ 1 ------------------------------------------------------------ 1 d1auia_ 1 tdrvvkavpfppshrltakevfdndgkprvdilkahlmkegrleesvalriitegasilr 60 d1ii7a_ 1 ---------MKFAHLADIHLgyeqfhkpqreeeFAEAFKNALEIAVQenvDFILIAGDLF 51 ::::::::::: :::::::::::::: :::::::::: d1auia_ 61 qeknlldidAPVTVCGDIHG-------------QFFDLMKLFEVGGSpanTRYLFLGDYV 107 d1ii7a_ 52 HSsrpspgTLKKAIALL-QIPKEHSIPVFAIEGNHDRTQ--------------------- 89 :: ::::::::: ::::::::::::::::::::: d1auia_ 108 DR----gyFSIECVLYLwALKILYPKTLFLLRGNHECRHlteyftfkqeckikyservyd 163 d1ii7a_ 90 -rgPSVLNlledfglvYVIGmrkekveneyltserlgngeylvkgvykdleihgmkymss 148 ::::: :::: d1auia_ 164 acmDAFDC--------LPLA---------------------------------------- 175 d1ii7a_ 149 awfeankeilkrlfrptdNAILMLHQ---------------------------------G 175 :::::::: : d1auia_ 176 --------------almnQQFLCVHGglspeintlddirkldrfkeppaygpmcdilwsD 221 d1ii7a_ 176 VRE--------vsearGEDY---FEIGLGDLP-----EGYLYYALGHIHK---RYETSYS 216 ::: :::: ::::::::: ::::::::::::: ::::::: d1auia_ 222 PLEdfgnektqehfthNTVRgcsYFYSYPAVCeflqhNNLLSILRAHEAQdagYRMYRKS 281 d1ii7a_ 217 ----GSPVVYPGSLERWdfgdyevryewdgikfkerygVNKGFYIVEDFKPRFVEIKVrp 272 ::::::::::::: :::::::::::::::::::: d1auia_ 282 qttgFPSLITIFSAPNY----------------ldvynNKAAVLKYENNVMNIRQFNC-- 323 d1ii7a_ 273 fidvkikgseeeirkaikrliplipknayvrlnigwrkpfdlteikellnveylkidtwr 332 d1auia_ 324 ------sphpywlpnfmdvftwslpfvgekvtemlvnvlnicssfeeakgldrinermpp 377 d1ii7a_ 333 i 333 d1auia_ 378 r 378 FAST alignment (Normalized score: 4.21 Raw score:1493.00) d1ii7a_ 1 M----------------------------------------------------------- 1 d1auia_ 1 -TDRVVKAVPFPPSHRLTAKEVFDNDGKPRVDILKAHLMKEGRLEESVALRIITEGASIL 59 d1ii7a_ 2 -----------KFAHLADIHLGYEQFHKPQREEE--FAEAFKNALEIAVQENV------D 42 :::::::: ::::::::::: : d1auia_ 60 RQEKNLLDIDAPVTVCGDI---------------HGQFFDLMKLFEV------GGSPANT 98 d1ii7a_ 43 FILIAGDLFHSSRP------SPGTLKKAIALLQIPKEHSI---PVFAIEGNHDRTQRGP- 92 :::::::: :::::::::::::: ::::::::::: d1auia_ 99 RYLFLGDY------VDRGYFSIECVLYLWALKIL------YPKTLFLLRGNHEC-----R 141 d1ii7a_ 93 -------------------------SVLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNG 127 ::::: d1auia_ 142 HLTEYFTFKQECKIKYSERVYDACMDAFDC------------------------------ 171 d1ii7a_ 128 EYL--VKGVYKDLEIHGMKYMSSAWFEANKEILKRLFRPTDNAILML------------- 172 :::::: :::::: d1auia_ 172 ---LPLAALMN------------------------------QQFLCVHGGLSPEINTLDD 198 d1ii7a_ 173 --------------------HQGVREVSEARGEDYF-----------------------E 189 :::: : d1auia_ 199 IRKLDRFKEPPAYGPMCDILWSDP------------LEDFGNEKTQEHFTHNTVRGCSYF 246 d1ii7a_ 190 IGLGDLP-------EGYLYYALGHIHKR-------YETSYSGS-----PVVYPGS--LER 228 ::::: ::::::::::: :::::: ::::: ::: d1auia_ 247 YSYPA--VCEFLQHNNLLSILRAHE---AQDAGYRMYRKSQ--TTGFPSLITI--FSAPN 297 d1ii7a_ 229 WDFGDYEVRYEWDGIKFKERY-GVNKGFYIVEDFKPRFVEIKVRPFIDVKIKGSEEEIRK 287 :::: :::::::::::::::::::: d1auia_ 298 YLDV-----------------YNNKAAVLKYENNVMNIRQFN------------------ 322 d1ii7a_ 288 AIKRLIPLIPKNAYVRLNIGWRKPFDLTEIKELLNVEYLKIDTWRI-------------- 333 d1auia_ 323 ----------------------------------------------CSPHPYWLPNFMDV 336 d1ii7a_ 334 ------------------------------------------ 334 d1auia_ 337 FTWSLPFVGEKVTEMLVNVLNICSSFEEAKGLDRINERMPPR 378 TMalign alignment (TM-score: 0.46 Raw score:151.62) d1ii7a_ 1 ------------------------------------------------------------ 1 d1auia_ 1 TDRVVKAVPFPPSHRLTAKEVFDNDGKPRVDILKAHLMKEGRLEESVALRIITEGASILR 60 d1ii7a_ 1 ---------MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLF 51 ::::::::::: ::::::::::::::::::::::::::: d1auia_ 61 QEKNLLDIDAPVTVCGDIHG-------------QFFDLMKLFEVGGSPANTRYLFLGDYV 107 d1ii7a_ 52 HSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNHDRTQR-------------------GP 92 :: :: :::::::::::::::::::::::::::::::: : d1auia_ 108 DR--GY-FSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVY-D 163 d1ii7a_ 93 SVLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSSAWFE 152 :::::::: ::: :::: :::::::::: : : d1auia_ 164 ACMDAFDC-----LPL-----------------------AALM-NQQFLCVHGG-L--S- 190 d1ii7a_ 153 ANKEILKRLFRP----------------TDNAILMLH-QGVREVSEA---------RGED 186 ::::::::: ::: ::::::::: :: d1auia_ 191 ---PEINTLDDIRKLDRFKEPPAYGPMC------DILWSDPLEDFGNEKTQEHFTH--NT 239 d1ii7a_ 187 Y----FEIGLGDL--PE---GYLYYALGHIHK---RYET-SY-SG-SP-VVYPGSLERWD 230 : :::::::: :: :::::::::::: :::: :: :: :: ::::::::::: d1auia_ 240 VRGCSYFYSYPAVCEFLQHNNLLSILRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYL 299 d1ii7a_ 231 FGDYEVRYEWDGIKFKERYGVNKGFYIVEDFKPRFVEIKVRP------------------ 272 ::::: ::::::::::::::::::::: d1auia_ 300 DVYNN----------------KAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVFTWSLPF 343 d1ii7a_ 273 -----------------FIDVKIKGSEEEIRKAIKRLIPLIPKNAYVR-LN---IGWRKP 311 :: : d1auia_ 344 VGEKVTEMLVNVLNICS-----------------------------SFE-EAKG------ 367 d1ii7a_ 312 FDLTEIKELLNVEYLK----------IDTWRI 333 : d1auia_ 368 ---------------LDRINERMPPR------ 378 HHsearch alignment (Probability: 0.97 E-value:0.00) d1ii7a_ 2 KFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTL 61 ::::::::::: :::::::::::::::::::::::::::::::::::: d1auia_ 71 PVTVCGDIHGQ-------------FFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECV 117 d1ii7a_ 62 KKAIALLQIPKEHSIPVFAIEGNHDRTQ 89 ::::::: :::::::::::::::::: d1auia_ 118 LYLWALK---ILYPKTLFLLRGNHECRH 142