Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ii7a_ | Mre11 | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
| Hit | d1jk7a_ | Protein phosphatase-1 (PP-1) | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
Query <-- 1.211 --> IntermediateDALI alignment (Z-score: 7.2 Raw score:832.10) query 1 slqLRLALNQIDS-TVGD------IAGNAEAILRWTRHSAEQGAHLVAFPEMALTgypve 53 :::::::::: :::: ::::::::::::::::::::::::::::::: d1ii7a_ 1 ---MKFAHLADIHlGYEQfhkpqrEEEFAEAFKNALEIAVQENVDFILIAGDLFH----- 52 query 54 dlalrssFVEASRTALRELAARLAeegFGELPVLV---gyLDRSesaqpkygqpaGAPRN 110 ::::::::::::::::: :::::::: :::: ::::: d1ii7a_ 53 ----ssrPSPGTLKKAIALLQIPK---EHSIPVFAiegnhDRTQ-----------RGPSV 94 query 111 AaavlhrgRVALTfakhhlpnygvfdefryfvpgDTMPIVRLHGVDIALAICE----dlw 166 : ::::: ::::::::::::::::::: d1ii7a_ 95 L-nlledfGLVYVigmrkekveneyltserlgngEYLVKGVYKDLEIHGMKYMssawfea 153 query 167 QDGGRVPAARsagaGLLLSV---naspyERDKDDTrleLVRKRAqEAGCT-TAYLAMIgg 222 :::::::::: :::::: ::::::: :::::: ::::: ::::::: d1ii7a_ 154 NKEILKRLFRptdnAILMLHqgvrevseARGEDYF--eIGLGDL-PEGYLyYALGHIH-- 208 query 223 qdelvfDGDSivvdrDGEVVARA--------------------------pqFSEGCVVLD 256 :::: :::::::: ::::::::: d1ii7a_ 209 ------KRYE---tsYSGSPVVYpgslerwdfgdyevryewdgikfkerygVNKGFYIVE 259 query 257 LdlpaaeaepptgvvddglridrlviseeplpayeaeLAGGyadrldadeevysalvvgl 316 : :::: d1ii7a_ 260 D------------------------------------FKPR------------------- 264 query 317 rayvakngfrsvliglsggidsalvaaiacdalgaqnvygvsmpskyssdhskgdaaela 376 d1ii7a_ 265 ------------------------------------------------------------ 265 query 377 rrtglnfrtvsiepmfdaymaslgltglaeenlqsrlrgttlmaisnqeghivlapgnks 436 d1ii7a_ 265 ------------------------------------------------------------ 265 query 437 elavgystlygdsvgaygpikdvyktsifrlaewrnraaaergqtppipeasitkpdypv 496 d1ii7a_ 265 ------------------------------------------------------------ 265 query 497 ldailelyvdrdtgadaivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfgkdr 556 d1ii7a_ 265 ---fveikvrpfidvkikgseeeirkaikrliplipknayvrlnigwrkpfdlteikell 321 query 557 rlpitnrwregh 568 d1ii7a_ 322 nveylkidtwri 333 FAST alignment (Normalized score: 2.90 Raw score:1260.00) query 1 SLQLRLALNQIDSTVG--------------DIAGNAEAILRWTRHSAEQGAHLVAFPEMA 46 :::::: :::::::::::::::::::::::::::::: d1ii7a_ 1 ---MKFAHL-------ADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDL 50 query 47 LTGYPVEDLALRSSF------VEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPK 100 ::::::::::::::::: ::::::: d1ii7a_ 51 ---------------FHSSRPSPGTLKKAIALLQIPKE---HSIPVFA------------ 80 query 101 YGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPG---------------- 144 d1ii7a_ 81 --------------------------------------------IEGNHDRTQRGPSVLN 96 query 145 -------------------------------DTMPIVRLHGVDIALAICEDLW------- 166 ::::::::::::::::: d1ii7a_ 97 LLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMK-----YMSSAWF 151 query 167 --QDGGRVPAARSAGA------GLLLSVNASPYERDKDDT--------------RLELVR 204 :::::::: ::::::::: :::: d1ii7a_ 152 EANKEILKRL------FRPTDNAILMLHQGV---------REVSEARGEDYFEIGLGD-- 194 query 205 KRAQEA----GCTTAYLAMIGGQDELVFD---GDSIVVDRDGEVVARAPQ---------- 247 :::::: :::::: d1ii7a_ 195 ------LPEGYLYYAL-------------GHIHKRYET------------SYSGSPVVYP 223 query 248 ---------------------------FSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRL 280 :::::::: d1ii7a_ 224 GSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIV------------------------- 258 query 281 VISEEPLPAYEAELAGGYADRLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSAL 340 d1ii7a_ 259 ------------------------------------------------------------ 259 query 341 VAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLG 400 d1ii7a_ 259 ------------------------------------------------------------ 259 query 401 LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVY 460 d1ii7a_ 259 ------------------------------------------------------------ 259 query 461 KTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYD 520 d1ii7a_ 259 ------------------------------------------------------------ 259 query 521 RELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH------------ 568 d1ii7a_ 259 ------------------------------------------------EDFKPRFVEIKV 270 query 569 ------------------------------------------------------------ 569 d1ii7a_ 271 RPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGWRKPFDLTEIKELLNVEYLKIDT 330 query 569 --- 569 d1ii7a_ 331 WRI 333 TMalign alignment (TM-score: 0.35 Raw score:198.57) query 1 SLQLRLALNQIDSTVGD-------IAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVE 53 :::::::::::::: ::::::::::::::::::::::::::::: :: : d1ii7a_ 1 ---MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDL-FH--S- 53 query 54 DLALRSSFVEASRTALRELAARLAEEGFGELPVLVGY---LDRSESAQPKYGQPAGAPRN 110 : : ::::::::::::::::: :: :::::::: ::: : :::: d1ii7a_ 54 --S-R--PSPGTLKKAIALLQIPK--EH-SIPVFAIEGNHDRT---------Q---RGPS 93 query 111 AAAVLHRGRVALTFAKH----------------HLPNYGVFDEFRYFVPGDTMPIVRLHG 154 ::::::::::::::::: ::::::::::: d1ii7a_ 94 VLNLLEDFGLVYVIGMRKEKVENEYLTSERLGN----------------GEYLVKGVYKD 137 query 155 VDIALAICEDL--W--QDGGRVPAARSAGAGLLLSVNASP--YERDKDDT-R-LELVRKR 206 ::::::::::: : ::::::::::: :::::::::::: :::::::: : :::::: d1ii7a_ 138 LEIHGMKYMSSAWFEANKEILKRLFRP-TDNAILMLHQGVREVSEARGEDYFE-IGLGDL 195 query 207 AQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQ------------------- 247 :: :::::::::: :::::::: ::::::::: d1ii7a_ 196 PE--GYLYYALGHI-------HKRYETSY---SGSPVVYPGSLERWDFGDYEVRYEWDGI 243 query 248 -------FSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYA- 299 ::::::::::: ::::: d1ii7a_ 244 KFKERYGVNKGFYIVEDF------------------------------------KPRFVE 267 query 300 --DRLDADEEVYSALVV-GLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYG 356 : ::: : :::: d1ii7a_ 268 IK--------------VR-PFI---------D-----------VKIK------------- 279 query 357 VSMPSKYSSDHSKGDAAELARRTGLN--------------FRTVSIEPMFDAYMASLGLT 402 :::::::::::::::: d1ii7a_ 280 ----------GSEEEIRKAIKRLIPLIPKNAYVRLNIGWR-------------------- 309 query 403 GLAEENLQSRLRGTTLMAISNQ-E-GHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVY 460 :: : :::::::: : :::::::: :: d1ii7a_ 310 -------KP--F--DLTEIKELLNVEYLKIDTW----------RI--------------- 333 query 461 KTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYD 520 d1ii7a_ 334 ------------------------------------------------------------ 334 query 521 RELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 568 d1ii7a_ 334 ------------------------------------------------ 334 HHsearch alignment (Probability: 0.04 E-value:0.06) query 19 AGNAEAILRWTRHSAEQGAHLVAF 42 :::::::::::::::::::::::: d1ii7a_ 23 EEFAEAFKNALEIAVQENVDFILI 46
Intermediate <-- 1.906 --> HitDALI alignment (Z-score: 9.0 Raw score:972.20) d1ii7a_ 1 ---------------------------------------------------MKFAHLADI 9 ::::::::: d1jk7a_ 1 klnidsiiqrllevrgskpgknvqlqeneirglclksreiflsqpilleleAPLKICGDI 60 d1ii7a_ 10 HLgyeqfhkpqreeeFAEAFKNALEIAVQeNVDFILIAGDLFHSsrpspgTLKKAIALL- 68 :: :::::::::::::: :::::::::::::: ::::::::: d1jk7a_ 61 HG-------------QYYDLLRLFEYGGFpPESNYLFLGDYVDR----gkQSLETICLLl 103 d1ii7a_ 69 QIPKEHSIPVFAIEGNHDRTQ--------------------RGPS-VLNLledfglvYVI 107 ::::::::::::::::::::: :::: :::: ::: d1jk7a_ 104 AYKIKYPENFFLLRGNHECASinriygfydeckrryniklwKTFTdCFNC-------LPI 156 d1ii7a_ 108 GmrkekveneyltserlgngeylvkgvykdleihgmkymssawfeankeilkrlfrptdN 167 : : d1jk7a_ 157 A------------------------------------------------------aivdE 162 d1ii7a_ 168 AILMLHQ---------------------------------GVRE-vsearGEDY--fEIG 191 ::::::: :::: :::: ::: d1jk7a_ 163 KIFCCHGglspdlqsmeqirrimrptdvpdqgllcdllwsDPDKdvlgwgENDRgvsFTF 222 d1ii7a_ 192 L-GDLP-----EGYLYYALGHIHK---RYETSYsgSPVVYPGSLERWdfgdyevryewdg 242 : :::: ::::::::::::: :::::: :::::::::::: d1jk7a_ 223 GaEVVAkflhkHDLDLICRAHQVVedgYEFFAK--RQLVTLFSAPNY------------- 267 d1ii7a_ 243 ikfkerygVNKGFYIVED-FKPRFVEIKVrpfidvkikgseeeirkaikrliplipknay 301 :::::::::: :::::::::: d1jk7a_ 268 ---cgefdNAGAMMSVDEtLMCSFQILKP------------------------------- 293 d1ii7a_ 302 vrlnigwrkpfdlteikellnveylkidtwri 333 d1jk7a_ 294 -------------------------------a 294 FAST alignment (Normalized score: 4.92 Raw score:1539.00) d1ii7a_ 1 M----------------------------------------------------KFAHLAD 8 ::::::: d1jk7a_ 1 -KLNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGD 59 d1ii7a_ 9 IHLGYEQFHKPQREEE--FAEAFKNALEIAVQENV------DFILIAGDLFHSSRP---- 56 : ::::::::::: ::::::::: d1jk7a_ 60 I---------------HGQYYDLLRLFEY------GGFPPESNYLFLGDY------VDRG 92 d1ii7a_ 57 --SPGTLKKAIALLQIPKEHSI---PVFAIEGNHDRTQRGPSVLNLLEDFGLVYVIGMRK 111 :::::::::::::: ::::::::::: d1jk7a_ 93 KQSLETICLLLAYKIK------YPENFFLLRGNHEC------------------------ 122 d1ii7a_ 112 EKVENEYLTSERLGNGEYL---------------------------------VKGVYKDL 138 :::::: d1jk7a_ 123 -------------------ASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIVD-- 161 d1ii7a_ 139 EIHGMKYMSSAWFEANKEILKRLFRPTDNAILML-------------------------- 172 :::::: d1jk7a_ 162 ----------------------------EKIFCCHGGLSPDLQSMEQIRRIMRPTDVPDQ 193 d1ii7a_ 173 -------HQGVREVSEA---------RGEDYF-EIGLGDLP------EGYLYYALGHIH- 208 :::: :::::: ::::::: ::::::::::: d1jk7a_ 194 GLLCDLLWSDP------DKDVLGWGENDRGVSFTFGAEVV-AKFLHKHDLDLICRAHQ-V 245 d1ii7a_ 209 ---KRYETSYSGS----PVVYPGSL----ERWDFGDYEVRYEWDGIKFKERY-GVNKGFY 256 :::: :::: :::::: ::::::: d1jk7a_ 246 VEDGYEF------FAKRQLVT----LFSAPNYCGE-----------------FDNAGAMM 278 d1ii7a_ 257 IV-EDFKPRFVEIKVRPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGWRKPFDLT 315 :: ::::::::::: d1jk7a_ 279 SVDETLMCSFQILK---------------------------------------------- 292 d1ii7a_ 316 EIKELLNVEYLKIDTWRI-- 333 d1jk7a_ 293 ------------------PA 294 TMalign alignment (TM-score: 0.44 Raw score:146.36) d1ii7a_ 1 ---------------------------------------------------MKFAHLADI 9 ::::::::: d1jk7a_ 1 KLNIDSIIQRLLEVRGSKPGKNVQLQENEIRGLCLKSREIFLSQPILLELEAPLKICGDI 60 d1ii7a_ 10 HLGYEQFHKPQREEEFAEAFKNALEIAVQE-NVDFILIAGDLFHSSRPSPGTLKKAIALL 68 :: ::::::::::::::: :: ::::::::::: :: :::::::::: d1jk7a_ 61 HG-------------QYYDLLRLFEYGGFPPES-NYLFLGDYVDR--GK-QSLETICLLL 103 d1ii7a_ 69 QIPKEHSIPVFAIEGNHDRTQR------------------GPSVLNLLEDFGLVYVIGMR 110 :::::::::::::::::::::: ::::::::: :::: d1jk7a_ 104 AYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFN-----CLPI-- 156 d1ii7a_ 111 KEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLFRP------ 164 :::: :::::::::: : : ::::::::: d1jk7a_ 157 ---------------------AAIV-DEKIFCCHGG-L--S----PDLQSMEQIRRIMRP 187 d1ii7a_ 165 -----------TDNAILMLHQGVREVSE---ARGEDYF---EIGL-GDL--PE---GYLY 201 ::::::::::: :::: :::: ::: :: :::: d1jk7a_ 188 TDVPDQGLLCD------LLWSDPDKDVLGWG---ENDRGVSFTFGAEVVAKFLHKHDLDL 238 d1ii7a_ 202 YALGHIHK---RYETSYSGSPVVYPGSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIV 258 :::::::: :::::: ::::::::::::::::: :::::::: d1jk7a_ 239 ICRAHQVVEDGYEFFAK--RQLVTLFSAPNYCGEFD----------------NAGAMMSV 280 d1ii7a_ 259 E-DFKPRFVEIKVRPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGWRKPFDLTEI 317 : :::::::::::: d1jk7a_ 281 DETLMCSFQILKPA---------------------------------------------- 294 d1ii7a_ 318 KELLNVEYLKIDTWRI 333 d1jk7a_ 295 ---------------- 295 HHsearch alignment (Probability: 0.97 E-value:0.00) d1ii7a_ 2 KFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTL 61 ::::::::::: :::::::::::::::::::::::::::::::::::: d1jk7a_ 53 PLKICGDIHGQ-------------YYDLLRLFEYGGFPPESNYLFLGDYVDRGKQSLETI 99 d1ii7a_ 62 KKAIALLQIPKEHSIPVFAIEGNHDRTQ 89 ::::::: :::::::::::::::::: d1jk7a_ 100 CLLLAYK---IKYPENFFLLRGNHECAS 124