Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ii7a_ | Mre11 | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
| Hit | d1g5ba_ | lambda ser/thr protein phosphatase | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
Query <-- 1.211 --> IntermediateDALI alignment (Z-score: 7.2 Raw score:832.10) query 1 slqLRLALNQIDS-TVGD------IAGNAEAILRWTRHSAEQGAHLVAFPEMALTgypve 53 :::::::::: :::: ::::::::::::::::::::::::::::::: d1ii7a_ 1 ---MKFAHLADIHlGYEQfhkpqrEEEFAEAFKNALEIAVQENVDFILIAGDLFH----- 52 query 54 dlalrssFVEASRTALRELAARLAeegFGELPVLV---gyLDRSesaqpkygqpaGAPRN 110 ::::::::::::::::: :::::::: :::: ::::: d1ii7a_ 53 ----ssrPSPGTLKKAIALLQIPK---EHSIPVFAiegnhDRTQ-----------RGPSV 94 query 111 AaavlhrgRVALTfakhhlpnygvfdefryfvpgDTMPIVRLHGVDIALAICE----dlw 166 : ::::: ::::::::::::::::::: d1ii7a_ 95 L-nlledfGLVYVigmrkekveneyltserlgngEYLVKGVYKDLEIHGMKYMssawfea 153 query 167 QDGGRVPAARsagaGLLLSV---naspyERDKDDTrleLVRKRAqEAGCT-TAYLAMIgg 222 :::::::::: :::::: ::::::: :::::: ::::: ::::::: d1ii7a_ 154 NKEILKRLFRptdnAILMLHqgvrevseARGEDYF--eIGLGDL-PEGYLyYALGHIH-- 208 query 223 qdelvfDGDSivvdrDGEVVARA--------------------------pqFSEGCVVLD 256 :::: :::::::: ::::::::: d1ii7a_ 209 ------KRYE---tsYSGSPVVYpgslerwdfgdyevryewdgikfkerygVNKGFYIVE 259 query 257 LdlpaaeaepptgvvddglridrlviseeplpayeaeLAGGyadrldadeevysalvvgl 316 : :::: d1ii7a_ 260 D------------------------------------FKPR------------------- 264 query 317 rayvakngfrsvliglsggidsalvaaiacdalgaqnvygvsmpskyssdhskgdaaela 376 d1ii7a_ 265 ------------------------------------------------------------ 265 query 377 rrtglnfrtvsiepmfdaymaslgltglaeenlqsrlrgttlmaisnqeghivlapgnks 436 d1ii7a_ 265 ------------------------------------------------------------ 265 query 437 elavgystlygdsvgaygpikdvyktsifrlaewrnraaaergqtppipeasitkpdypv 496 d1ii7a_ 265 ------------------------------------------------------------ 265 query 497 ldailelyvdrdtgadaivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfgkdr 556 d1ii7a_ 265 ---fveikvrpfidvkikgseeeirkaikrliplipknayvrlnigwrkpfdlteikell 321 query 557 rlpitnrwregh 568 d1ii7a_ 322 nveylkidtwri 333 FAST alignment (Normalized score: 2.90 Raw score:1260.00) query 1 SLQLRLALNQIDSTVG--------------DIAGNAEAILRWTRHSAEQGAHLVAFPEMA 46 :::::: :::::::::::::::::::::::::::::: d1ii7a_ 1 ---MKFAHL-------ADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDL 50 query 47 LTGYPVEDLALRSSF------VEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPK 100 ::::::::::::::::: ::::::: d1ii7a_ 51 ---------------FHSSRPSPGTLKKAIALLQIPKE---HSIPVFA------------ 80 query 101 YGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPG---------------- 144 d1ii7a_ 81 --------------------------------------------IEGNHDRTQRGPSVLN 96 query 145 -------------------------------DTMPIVRLHGVDIALAICEDLW------- 166 ::::::::::::::::: d1ii7a_ 97 LLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMK-----YMSSAWF 151 query 167 --QDGGRVPAARSAGA------GLLLSVNASPYERDKDDT--------------RLELVR 204 :::::::: ::::::::: :::: d1ii7a_ 152 EANKEILKRL------FRPTDNAILMLHQGV---------REVSEARGEDYFEIGLGD-- 194 query 205 KRAQEA----GCTTAYLAMIGGQDELVFD---GDSIVVDRDGEVVARAPQ---------- 247 :::::: :::::: d1ii7a_ 195 ------LPEGYLYYAL-------------GHIHKRYET------------SYSGSPVVYP 223 query 248 ---------------------------FSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRL 280 :::::::: d1ii7a_ 224 GSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIV------------------------- 258 query 281 VISEEPLPAYEAELAGGYADRLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSAL 340 d1ii7a_ 259 ------------------------------------------------------------ 259 query 341 VAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLG 400 d1ii7a_ 259 ------------------------------------------------------------ 259 query 401 LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVY 460 d1ii7a_ 259 ------------------------------------------------------------ 259 query 461 KTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYD 520 d1ii7a_ 259 ------------------------------------------------------------ 259 query 521 RELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH------------ 568 d1ii7a_ 259 ------------------------------------------------EDFKPRFVEIKV 270 query 569 ------------------------------------------------------------ 569 d1ii7a_ 271 RPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGWRKPFDLTEIKELLNVEYLKIDT 330 query 569 --- 569 d1ii7a_ 331 WRI 333 TMalign alignment (TM-score: 0.35 Raw score:198.57) query 1 SLQLRLALNQIDSTVGD-------IAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVE 53 :::::::::::::: ::::::::::::::::::::::::::::: :: : d1ii7a_ 1 ---MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDL-FH--S- 53 query 54 DLALRSSFVEASRTALRELAARLAEEGFGELPVLVGY---LDRSESAQPKYGQPAGAPRN 110 : : ::::::::::::::::: :: :::::::: ::: : :::: d1ii7a_ 54 --S-R--PSPGTLKKAIALLQIPK--EH-SIPVFAIEGNHDRT---------Q---RGPS 93 query 111 AAAVLHRGRVALTFAKH----------------HLPNYGVFDEFRYFVPGDTMPIVRLHG 154 ::::::::::::::::: ::::::::::: d1ii7a_ 94 VLNLLEDFGLVYVIGMRKEKVENEYLTSERLGN----------------GEYLVKGVYKD 137 query 155 VDIALAICEDL--W--QDGGRVPAARSAGAGLLLSVNASP--YERDKDDT-R-LELVRKR 206 ::::::::::: : ::::::::::: :::::::::::: :::::::: : :::::: d1ii7a_ 138 LEIHGMKYMSSAWFEANKEILKRLFRP-TDNAILMLHQGVREVSEARGEDYFE-IGLGDL 195 query 207 AQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQ------------------- 247 :: :::::::::: :::::::: ::::::::: d1ii7a_ 196 PE--GYLYYALGHI-------HKRYETSY---SGSPVVYPGSLERWDFGDYEVRYEWDGI 243 query 248 -------FSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYA- 299 ::::::::::: ::::: d1ii7a_ 244 KFKERYGVNKGFYIVEDF------------------------------------KPRFVE 267 query 300 --DRLDADEEVYSALVV-GLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYG 356 : ::: : :::: d1ii7a_ 268 IK--------------VR-PFI---------D-----------VKIK------------- 279 query 357 VSMPSKYSSDHSKGDAAELARRTGLN--------------FRTVSIEPMFDAYMASLGLT 402 :::::::::::::::: d1ii7a_ 280 ----------GSEEEIRKAIKRLIPLIPKNAYVRLNIGWR-------------------- 309 query 403 GLAEENLQSRLRGTTLMAISNQ-E-GHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVY 460 :: : :::::::: : :::::::: :: d1ii7a_ 310 -------KP--F--DLTEIKELLNVEYLKIDTW----------RI--------------- 333 query 461 KTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYD 520 d1ii7a_ 334 ------------------------------------------------------------ 334 query 521 RELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 568 d1ii7a_ 334 ------------------------------------------------ 334 HHsearch alignment (Probability: 0.04 E-value:0.06) query 19 AGNAEAILRWTRHSAEQGAHLVAF 42 :::::::::::::::::::::::: d1ii7a_ 23 EEFAEAFKNALEIAVQENVDFILI 46
Intermediate <-- 2.109 --> HitDALI alignment (Z-score: 6.9 Raw score:702.00) d1ii7a_ 1 ------------MKFAHLADIHLgyeqfhkpqreeeFAEAFKNALEIaVQEN--vDFILI 46 ::::::::::: ::::::::::: :::: ::::: d1g5ba_ 1 mryyekidgskyRNIWVVGDLHG-------------CYTNLMNKLDT-IGFDnkkDLLIS 46 d1ii7a_ 47 AGDLFHSsrpspgTLKKAiallqipkehSIPVFAIEGNHDR--TQRG------------- 91 ::::::: ::::: ::::::::::::: :::: d1g5ba_ 47 VGDLVDR----gaENVEC-----lelitFPWFRAVRGNHEQmmIDGLsergnvnhwllng 97 d1ii7a_ 92 ------------------PSVLNLledfglvYVIGmrkekveneyltserlgngeylvkg 133 :::::: :::: d1g5ba_ 98 ggwffnldydkeilakalAHKADE-------LPLI------------------------- 125 d1ii7a_ 134 vykdleihgmkymssawfeankeilkrlfrptDNAILMLHQ------------------- 174 ::::::::: d1g5ba_ 126 --------------------------ielvskDKKYVICHAdypfdeyefgkpvdhqqvi 159 d1ii7a_ 175 -GVREVSEARGedyfeiglgdLPEGYLYYALGHIHK--RYETSysgsPVVYPGSLERWDf 231 :::::::::: ::::::::::::::: ::::: :::::::::::: d1g5ba_ 160 wNRERISNSQN------givkEIKGADTFIFGHTPAvkPLKFA----NQMYIDTGAVFC- 208 d1ii7a_ 232 gdyevryewdgikfkerygvnKGFYIVEDfkprfveikvrpfidvkikgseeeirkaikr 291 :::::::: d1g5ba_ 209 -------------------gnLTLIQVQG------------------------------- 218 d1ii7a_ 292 liplipknayvrlnigwrkpfdlteikellnveylkidtwri 333 d1g5ba_ 219 -----------------------------------------a 219 FAST alignment (Normalized score: 4.24 Raw score:1144.00) d1ii7a_ 1 ------------MKFAHLADIHLGYEQFHKPQREEE--FAEAFKNALEIAVQENV----- 41 ::::::::: ::::::::::: d1g5ba_ 1 MRYYEKIDGSKYRNIWVVGDL---------------HGCYTNLMNKLDT------IGFDN 39 d1ii7a_ 42 --DFILIAGDLFHSSRPSPG-----TLKKAIALLQIPKEHSI--PVFAIEGNHDRTQRGP 92 ::::::::: :::::::::: :::::::::: d1g5ba_ 40 KKDLLISVGDL---------VDRGAENVECLELIT-------FPWFRAVRGNHE------ 77 d1ii7a_ 93 SVLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLV--------------------- 131 d1g5ba_ 78 ---------------------------------------QMMIDGLSERGNVNHWLLNGG 98 d1ii7a_ 132 ----------------------------KGVYKDLEIHGMKYMSSAWFEANKEILKRLFR 163 :::::: d1g5ba_ 99 GWFFNLDYDKEILAKALAHKADELPLIIELVSKD-------------------------- 132 d1ii7a_ 164 PTDNAILML--------------------HQGVREVSEARGEDYFEIGLGDL-------P 196 :::::: :::::::::: : d1g5ba_ 133 ---KKYVICHADYPFDEYEFGKPVDHQQVIWNRERISNS-------------QNGIVKEI 176 d1ii7a_ 197 EGYLYYALGHIH---KRYETSYSGS--PVVY-PGSLERWDFGDYEVRYEWDGIKFKERYG 250 ::::::::::: :::: :::: :::: d1g5ba_ 177 KGADTFIFGHT-PAVKPLK------FANQMYIDTGA------------------------ 205 d1ii7a_ 251 VNK------GFYIVEDFKPRFVEIKVRPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRL 304 :::: d1g5ba_ 206 ---VFCGNLTLIQ----------------------------------------------- 215 d1ii7a_ 305 NIGWRKPFDLTEIKELLNVEYLKIDTWRI---- 333 d1g5ba_ 216 -----------------------------VQGA 219 TMalign alignment (TM-score: 0.37 Raw score:123.52) d1ii7a_ 1 --------M----KFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQEN--VDFILI 46 : :::::::::: :::::::::::: ::: :::::: d1g5ba_ 1 MRYYEKIDGSKYRNIWVVGDLHG-------------CYTNLMNKLDTI-GFDNKKDLLIS 46 d1ii7a_ 47 AGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNHDR--TQR-GP----------- 92 ::::::: :: ::: :::: :: :: :: :::::::::: ::: :: d1g5ba_ 47 VGDLVDR--GA-ENV-ECLE-LI-TF--PW-FRAVRGNHEQMMIDGLSERGNVNHWLLNG 97 d1ii7a_ 93 ---------------S-VLNLLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYK 136 : :::::: :::: :::::: d1g5ba_ 98 GGWFFNLDYDKEILAKALAHKAD-----ELPL----------------------IIELVS 130 d1ii7a_ 137 -DLEIHGMKYMSSAWFEANKEILKRLFRPT-------DNAILMLH-QG--VREVSEARGE 185 :::::::::: ::::: :::: :: :: ::::::: d1g5ba_ 131 KDKKYVICHAD---------YPFDE-YEFGKPVDHQQ------VIWNRERISNSQNG--- 171 d1ii7a_ 186 DYFEIGLGDLPEGYLYYALGHIHK-RYETSYSGSPVVYPGSLERWDFGDYEVRYEWDGIK 244 ::: ::::::::::::::: :::::: : :::::::::: : d1g5ba_ 172 -----IVK-EIKGADTFIFGHTPAVKPLKFA--N-QMYIDTGAVF---C----------- 208 d1ii7a_ 245 FKERYGVNKGFYIVEDFKPRFVEIKVRPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRL 304 :::::::::: : d1g5ba_ 209 -------GNLTLIQVQG--A---------------------------------------- 219 d1ii7a_ 305 NIGWRKPFDLTEIKELLNVEYLKIDTWRI 333 d1g5ba_ 220 ----------------------------- 220 HHsearch alignment (Probability: 0.99 E-value:0.00) d1ii7a_ 2 KFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAV-QENVDFILIAGDLFHSSRPSPGT 60 ::::::::::: :::::::::::: ::::::::::::::::::::::: d1g5ba_ 14 NIWVVGDLHGC-------------YTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVEC 60 d1ii7a_ 61 LKKAIALLQIPKEHSIPVFAIEGNHDRTQRGPSVLNLLEDFGLVYVIGMRKEKVENEYLT 120 ::: :: :::::::::::::::: ::::::::::: : d1g5ba_ 61 LEL----IT-----FPWFRAVRGNHEQMMI-----DGLSERGNVNH-----------W-- 93 d1ii7a_ 121 SERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLF-----RPTDNAILMLHQG 175 :::: :::::::::::::::::::::::::: ::::::::::::: d1g5ba_ 94 ---LLNG---------GGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHAD 141 d1ii7a_ 176 VREVSEARGE-----D---------YFEIGLGDLPEGYLYYALGHIHKRYETSYSGSPVV 221 :::::::::: : ::::::::::::::::::::::::::::::::::: d1g5ba_ 142 YPFDEYEFGKPVDHQQVIWNRERISNSQNGIVKEIKGADTFIFGHTPAVKPLKFANQMYI 201 d1ii7a_ 222 YPGSLERW 229 :::::::: d1g5ba_ 202 DTGAVFCG 209