Reference:
H. Cheng, BH. Kim, and N. Grishin (2008). Discrimination between distant homologs and structural analogs: lessons from manually constructed, reliable datasets.
J. Mol. Biol. 377(4): 1265-1278
BH. Kim, H. Cheng, and N. Grishin (2009). HorA web server to infer homology between proteins using sequence and structural similarity.
Nucleic Acids Res. 37(Web Server issue):W532-8
Comments and suggestions to: grishin@chop.swmed.edu
Query: T542_A.pdb A
Database: SCOP1.69 less than 40% identity downloaded from ASTRAL
| SCOP Id | Protein | SCOP Superfamily | SCOP Fold | SCOP Class |
|
|---|---|---|---|---|---|
| Intermediate | d1ii7a_ | Mre11 | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
| Hit | d1su1a_ | Phosphodiesterase yfcE | Metallo-dependent phosphatases | Metallo-dependent phosphatases | α+β |
Query <-- 1.211 --> IntermediateDALI alignment (Z-score: 7.2 Raw score:832.10) query 1 slqLRLALNQIDS-TVGD------IAGNAEAILRWTRHSAEQGAHLVAFPEMALTgypve 53 :::::::::: :::: ::::::::::::::::::::::::::::::: d1ii7a_ 1 ---MKFAHLADIHlGYEQfhkpqrEEEFAEAFKNALEIAVQENVDFILIAGDLFH----- 52 query 54 dlalrssFVEASRTALRELAARLAeegFGELPVLV---gyLDRSesaqpkygqpaGAPRN 110 ::::::::::::::::: :::::::: :::: ::::: d1ii7a_ 53 ----ssrPSPGTLKKAIALLQIPK---EHSIPVFAiegnhDRTQ-----------RGPSV 94 query 111 AaavlhrgRVALTfakhhlpnygvfdefryfvpgDTMPIVRLHGVDIALAICE----dlw 166 : ::::: ::::::::::::::::::: d1ii7a_ 95 L-nlledfGLVYVigmrkekveneyltserlgngEYLVKGVYKDLEIHGMKYMssawfea 153 query 167 QDGGRVPAARsagaGLLLSV---naspyERDKDDTrleLVRKRAqEAGCT-TAYLAMIgg 222 :::::::::: :::::: ::::::: :::::: ::::: ::::::: d1ii7a_ 154 NKEILKRLFRptdnAILMLHqgvrevseARGEDYF--eIGLGDL-PEGYLyYALGHIH-- 208 query 223 qdelvfDGDSivvdrDGEVVARA--------------------------pqFSEGCVVLD 256 :::: :::::::: ::::::::: d1ii7a_ 209 ------KRYE---tsYSGSPVVYpgslerwdfgdyevryewdgikfkerygVNKGFYIVE 259 query 257 LdlpaaeaepptgvvddglridrlviseeplpayeaeLAGGyadrldadeevysalvvgl 316 : :::: d1ii7a_ 260 D------------------------------------FKPR------------------- 264 query 317 rayvakngfrsvliglsggidsalvaaiacdalgaqnvygvsmpskyssdhskgdaaela 376 d1ii7a_ 265 ------------------------------------------------------------ 265 query 377 rrtglnfrtvsiepmfdaymaslgltglaeenlqsrlrgttlmaisnqeghivlapgnks 436 d1ii7a_ 265 ------------------------------------------------------------ 265 query 437 elavgystlygdsvgaygpikdvyktsifrlaewrnraaaergqtppipeasitkpdypv 496 d1ii7a_ 265 ------------------------------------------------------------ 265 query 497 ldailelyvdrdtgadaivaagydrelvvktlrmvdtaeykrrqyppgtkisakgfgkdr 556 d1ii7a_ 265 ---fveikvrpfidvkikgseeeirkaikrliplipknayvrlnigwrkpfdlteikell 321 query 557 rlpitnrwregh 568 d1ii7a_ 322 nveylkidtwri 333 FAST alignment (Normalized score: 2.90 Raw score:1260.00) query 1 SLQLRLALNQIDSTVG--------------DIAGNAEAILRWTRHSAEQGAHLVAFPEMA 46 :::::: :::::::::::::::::::::::::::::: d1ii7a_ 1 ---MKFAHL-------ADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDL 50 query 47 LTGYPVEDLALRSSF------VEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPK 100 ::::::::::::::::: ::::::: d1ii7a_ 51 ---------------FHSSRPSPGTLKKAIALLQIPKE---HSIPVFA------------ 80 query 101 YGQPAGAPRNAAAVLHRGRVALTFAKHHLPNYGVFDEFRYFVPG---------------- 144 d1ii7a_ 81 --------------------------------------------IEGNHDRTQRGPSVLN 96 query 145 -------------------------------DTMPIVRLHGVDIALAICEDLW------- 166 ::::::::::::::::: d1ii7a_ 97 LLEDFGLVYVIGMRKEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMK-----YMSSAWF 151 query 167 --QDGGRVPAARSAGA------GLLLSVNASPYERDKDDT--------------RLELVR 204 :::::::: ::::::::: :::: d1ii7a_ 152 EANKEILKRL------FRPTDNAILMLHQGV---------REVSEARGEDYFEIGLGD-- 194 query 205 KRAQEA----GCTTAYLAMIGGQDELVFD---GDSIVVDRDGEVVARAPQ---------- 247 :::::: :::::: d1ii7a_ 195 ------LPEGYLYYAL-------------GHIHKRYET------------SYSGSPVVYP 223 query 248 ---------------------------FSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRL 280 :::::::: d1ii7a_ 224 GSLERWDFGDYEVRYEWDGIKFKERYGVNKGFYIV------------------------- 258 query 281 VISEEPLPAYEAELAGGYADRLDADEEVYSALVVGLRAYVAKNGFRSVLIGLSGGIDSAL 340 d1ii7a_ 259 ------------------------------------------------------------ 259 query 341 VAAIACDALGAQNVYGVSMPSKYSSDHSKGDAAELARRTGLNFRTVSIEPMFDAYMASLG 400 d1ii7a_ 259 ------------------------------------------------------------ 259 query 401 LTGLAEENLQSRLRGTTLMAISNQEGHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVY 460 d1ii7a_ 259 ------------------------------------------------------------ 259 query 461 KTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYD 520 d1ii7a_ 259 ------------------------------------------------------------ 259 query 521 RELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH------------ 568 d1ii7a_ 259 ------------------------------------------------EDFKPRFVEIKV 270 query 569 ------------------------------------------------------------ 569 d1ii7a_ 271 RPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGWRKPFDLTEIKELLNVEYLKIDT 330 query 569 --- 569 d1ii7a_ 331 WRI 333 TMalign alignment (TM-score: 0.35 Raw score:198.57) query 1 SLQLRLALNQIDSTVGD-------IAGNAEAILRWTRHSAEQGAHLVAFPEMALTGYPVE 53 :::::::::::::: ::::::::::::::::::::::::::::: :: : d1ii7a_ 1 ---MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDL-FH--S- 53 query 54 DLALRSSFVEASRTALRELAARLAEEGFGELPVLVGY---LDRSESAQPKYGQPAGAPRN 110 : : ::::::::::::::::: :: :::::::: ::: : :::: d1ii7a_ 54 --S-R--PSPGTLKKAIALLQIPK--EH-SIPVFAIEGNHDRT---------Q---RGPS 93 query 111 AAAVLHRGRVALTFAKH----------------HLPNYGVFDEFRYFVPGDTMPIVRLHG 154 ::::::::::::::::: ::::::::::: d1ii7a_ 94 VLNLLEDFGLVYVIGMRKEKVENEYLTSERLGN----------------GEYLVKGVYKD 137 query 155 VDIALAICEDL--W--QDGGRVPAARSAGAGLLLSVNASP--YERDKDDT-R-LELVRKR 206 ::::::::::: : ::::::::::: :::::::::::: :::::::: : :::::: d1ii7a_ 138 LEIHGMKYMSSAWFEANKEILKRLFRP-TDNAILMLHQGVREVSEARGEDYFE-IGLGDL 195 query 207 AQEAGCTTAYLAMIGGQDELVFDGDSIVVDRDGEVVARAPQ------------------- 247 :: :::::::::: :::::::: ::::::::: d1ii7a_ 196 PE--GYLYYALGHI-------HKRYETSY---SGSPVVYPGSLERWDFGDYEVRYEWDGI 243 query 248 -------FSEGCVVLDLDLPAAEAEPPTGVVDDGLRIDRLVISEEPLPAYEAELAGGYA- 299 ::::::::::: ::::: d1ii7a_ 244 KFKERYGVNKGFYIVEDF------------------------------------KPRFVE 267 query 300 --DRLDADEEVYSALVV-GLRAYVAKNGFRSVLIGLSGGIDSALVAAIACDALGAQNVYG 356 : ::: : :::: d1ii7a_ 268 IK--------------VR-PFI---------D-----------VKIK------------- 279 query 357 VSMPSKYSSDHSKGDAAELARRTGLN--------------FRTVSIEPMFDAYMASLGLT 402 :::::::::::::::: d1ii7a_ 280 ----------GSEEEIRKAIKRLIPLIPKNAYVRLNIGWR-------------------- 309 query 403 GLAEENLQSRLRGTTLMAISNQ-E-GHIVLAPGNKSELAVGYSTLYGDSVGAYGPIKDVY 460 :: : :::::::: : :::::::: :: d1ii7a_ 310 -------KP--F--DLTEIKELLNVEYLKIDTW----------RI--------------- 333 query 461 KTSIFRLAEWRNRAAAERGQTPPIPEASITKPDYPVLDAILELYVDRDTGADAIVAAGYD 520 d1ii7a_ 334 ------------------------------------------------------------ 334 query 521 RELVVKTLRMVDTAEYKRRQYPPGTKISAKGFGKDRRLPITNRWREGH 568 d1ii7a_ 334 ------------------------------------------------ 334 HHsearch alignment (Probability: 0.04 E-value:0.06) query 19 AGNAEAILRWTRHSAEQGAHLVAF 42 :::::::::::::::::::::::: d1ii7a_ 23 EEFAEAFKNALEIAVQENVDFILI 46
Intermediate <-- 2.232 --> HitDALI alignment (Z-score: 13.3 Raw score:1142.50) d1ii7a_ 1 -MKFAHLADIHLgyeqfhkpqreeeFAEAFKNALEIAVQENVDFILIAGDLFHSSR---- 55 ::::::::::: ::::::::::::::::::::::::::::::: d1su1a_ 1 mMKLMFASDIHG-------------SLPATERVLELFAQSGAQWLVILGDVLNHGPrnal 47 d1ii7a_ 56 pspgTLKKAIALLQIPKehsIPVFAIEGNHDRtqrgpSVLNLLEdfgLVYVIGmrkekve 115 ::::::::::::: :::::::::::: ::::::: :::::: d1su1a_ 48 pegyAPAKVVERLNEVA---HKVIAVRGNCDS-----EVDQMLL---HFPITA------- 89 d1ii7a_ 116 neyltserlgngeylvkgvykdlEIHGmkymssawfeankeilkrlfrpTDNAILMLHQ- 174 :::: :::::::::: d1su1a_ 90 ----------------------pWQQV--------------------llEKQRLFLTHGh 107 d1ii7a_ 175 --GVREvseargedyfeiglgDLPEG-yLYYALGHIHKRYETSYSGSPVVYPGSLERWDf 231 :::: ::::: ::::::::::::::::::::::::::::::: d1su1a_ 108 lfGPEN---------------LPALNqnDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPK- 151 d1ii7a_ 232 gdyevryewdgikfkeryGVNKGFYIVEDFKPRFVEIKVrpfidvkikgseeeirkaikr 291 ::::::::::::::::::::: d1su1a_ 152 -----------------gGNPASYGMLDNDVLSVIALND--------------------- 173 d1ii7a_ 292 liplipknayvrlnigwrkpfdlteikellnveylkidtwri 333 d1su1a_ 174 -------------------------------qsiiaqvainp 184 FAST alignment (Normalized score: 7.65 Raw score:1894.00) d1ii7a_ 1 -MKFAHLADIHLGYEQFHKPQREEE--FAEAFKNALEIAVQENVDFILIAGDLFHSSRPS 57 ::::::::: :::::::::::::::::::::::::: d1su1a_ 1 MMKLMFASDI---------------HGSLPATERVLELFAQSGAQWLVILGDV------- 38 d1ii7a_ 58 PG-------------TLKKAIALLQIPKEHSIPVFAIEGNHDRTQRGPSVLNLLEDFGLV 104 :::::::::::::: :::::::::: :::::: d1su1a_ 39 --LNHGPRNALPEGYAPAKVVERLNEVAH---KVIAVRGNCD--------SEVDQM---- 81 d1ii7a_ 105 YVIGMRKEKVENEYLTSERLGNGEY---------LVKGVYKDLEIHGMKYMSSAWFEANK 155 :::::::: d1su1a_ 82 -------------------------LLHFPITAPWQQVLLEK------------------ 98 d1ii7a_ 156 EILKRLFRPTDNAILMLHQGVREVSEARGEDYFEI---GLGDLPEGY-----LYYALGHI 207 :::::::: :::::: :::::::: d1su1a_ 99 -----------QRLFLTHG----------------HLFGPENLP---ALNQNDVLVYGHT 128 d1ii7a_ 208 HKRYETSYSGSPVVYPGSLERWDFGDYEVRYEWDGIKFKERY-----GVNKGFYIVEDFK 262 ::::::::::::::::::: ::::::::::::: d1su1a_ 129 HLPVAEQRGEIFHFNPGSV-----------------------SIPKGGNPASYGMLDNDV 165 d1ii7a_ 263 PRFVEIKVRPFIDVKIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGWRKPFDLTEIKELLN 322 ::::: d1su1a_ 166 LSVIA------------------------------------------------------- 170 d1ii7a_ 323 VEYLKIDTWRI-------------- 333 d1su1a_ 171 -----------LNDQSIIAQVAINP 184 TMalign alignment (TM-score: 0.41 Raw score:138.10) d1ii7a_ 1 -MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSS----- 54 ::::::::::: :::::::::::::::::::::::::::::: d1su1a_ 1 MMKLMFASDIHG-------------SLPATERVLELFAQSGAQWLVILGDVLNHGPRNAL 47 d1ii7a_ 55 ----RPSPGTLKKAIALLQIPKEHSIPVFAIEGNHDRTQRGPSVLNLLEDFGLVYVIGMR 110 ::: :::::::::: : ::::::::::: ::::::: : :::::: d1su1a_ 48 PEGY----APA-KVVERLNEVA--H-KVIAVRGNCDS----EVDQMLL--H--FPITAP- 90 d1ii7a_ 111 KEKVENEYLTSERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLFRPTDNAIL 170 :: ::: ::::::: d1su1a_ 91 --------------------WQ------QVL----------------------LEKQRLF 102 d1ii7a_ 171 MLHQG--VREVSEARGEDYFEIGLGDLPEG-YLYYALGHIHKRYETSYSGSPVVYPGSLE 227 ::::: :: :: ::::: ::::::::::::::::::::::::::::: d1su1a_ 103 LTHGHLFGP------------EN--LPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVS 148 d1ii7a_ 228 RWDFGDYEVRYEWDGIKFKERYGVNKGFYIVEDFKPRFVEIKV-----------RPFIDV 276 :: :: ::::::::::::::::::::: d1su1a_ 149 IP---KG---------------GNPASYGMLDNDVLSVIALNDQSIIAQVAINP------ 184 d1ii7a_ 277 KIKGSEEEIRKAIKRLIPLIPKNAYVRLNIGWRKPFDLTEIKELLNVEYLKIDTWRI 333 d1su1a_ 185 --------------------------------------------------------- 185 HHsearch alignment (Probability: 1.00 E-value:0.00) d1ii7a_ 1 MKFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGT 60 ::::::::::::: :::::::::::::::::::::::::::::::::: d1su1a_ 2 MKLMFASDIHGSL-------------PATERVLELFAQSGAQWLVILGDVLNHGPRNALP 48 d1ii7a_ 61 LK-KAIALLQIPKEHSIPVFAIEGNHDRTQRGPSVLNLLEDFGLVYVIGMRKEKVENEYL 119 :: :::::::::::::::::::::::::::::::: :: ::: d1su1a_ 49 EGYAPAKVVERLNEVAHKVIAVRGNCDSEVDQMLL-----HF---------------PIT 88 d1ii7a_ 120 TSERLGNGEYLVKGVYKDLEIHGMKYMSSAWFEANKEILKRLFRPTDNAILMLHQGVREV 179 :: ::::::::::::::::::::: d1su1a_ 89 AP-------------------------------------WQQVLLEKQRLFLTHGHLFGP 111 d1ii7a_ 180 SEARGEDYFEIGLGDLPEGYLYYALGHIHKRYETSYSGSPVVYPGSLERWDFGDYEVRYE 239 :: ::::::::::::::::::::::::::::::::::::::::: ::: d1su1a_ 112 EN-----------LPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGN---PAS 157 d1ii7a_ 240 WDGIKFKE 247 :::::::: d1su1a_ 158 YGMLDNDV 165